Hdac4 (histone deacetylase 4) - Rat Genome Database

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Gene: Hdac4 (histone deacetylase 4) Mus musculus
Analyze
Symbol: Hdac4
Name: histone deacetylase 4
RGD ID: 1550759
MGI Page MGI
Description: Exhibits several functions, including chromatin binding activity; protein deacetylase activity; and transcription corepressor activity. Is predicted to contribute to transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including negative regulation of osteoblast differentiation; regulation of muscle system process; and regulation of nucleobase-containing compound metabolic process. Localizes to several cellular components, including actomyosin; cytosol; and neuromuscular junction. Is expressed in alimentary system; early embryo; ganglia; hand; and vibrissa. Used to study eating disorder. Human ortholog(s) of this gene implicated in ataxia telangiectasia; chromosome 2q37 deletion syndrome; eating disorder; and retinal degeneration. Orthologous to human HDAC4 (histone deacetylase 4); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4932408F19Rik; AI047285; HD4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,856,501 - 92,123,424 (-)NCBIGRCm39mm39
GRCm39 Ensembl191,856,501 - 92,123,421 (-)Ensembl
GRCm38191,928,779 - 92,195,702 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,928,779 - 92,195,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,829,311 - 94,044,970 (-)NCBIGRCm37mm9NCBIm37
MGSCv36193,763,140 - 93,978,799 (-)NCBImm8
Celera194,870,648 - 95,086,759 (-)NCBICelera
Cytogenetic Map1DNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
5-aza-2'-deoxycytidine  (EXP)
5-fluorouracil  (ISO)
acetylsalicylic acid  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
allethrin  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fenvalerate  (ISO)
fluoranthene  (EXP)
formaldehyde  (ISO)
gentamycin  (EXP)
indole-3-methanol  (EXP)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
manganese(II) chloride  (ISO)
MC1568  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
N-acetyl-1,4-benzoquinone imine  (ISO)
nicotine  (EXP,ISO)
nifedipine  (ISO)
O-methyleugenol  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
pelargonidin  (EXP)
phenylmercury acetate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tauroursodeoxycholic acid  (ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vecuronium bromide  (EXP)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cellular response to mechanical stimulus  (ISO)
cellular response to parathyroid hormone stimulus  (ISO)
cellular response to tumor necrosis factor  (ISO)
chromatin organization  (IEA)
chromatin remodeling  (ISO)
histone deacetylation  (ISO)
histone H3 deacetylation  (ISO)
histone H4 deacetylation  (ISO)
negative regulation of cell population proliferation  (IDA,IMP)
negative regulation of DNA-binding transcription factor activity  (ISO)
negative regulation of glycolytic process  (IMP)
negative regulation of myotube differentiation  (ISO)
negative regulation of osteoblast differentiation  (IMP)
negative regulation of pri-miRNA transcription by RNA polymerase II  (IGI,IMP)
negative regulation of transcription by RNA polymerase II  (IDA,IGI,ISO)
negative regulation of transcription, DNA-templated  (IDA,IMP,ISO)
osteoblast development  (IMP)
peptidyl-lysine deacetylation  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of lamellipodium assembly  (ISO)
positive regulation of male mating behavior  (ISO)
positive regulation of neuron apoptotic process  (ISO)
positive regulation of protein sumoylation  (ISO)
positive regulation of reactive oxygen species biosynthetic process  (ISO)
positive regulation of smooth muscle cell migration  (ISO)
positive regulation of smooth muscle cell proliferation  (ISO)
positive regulation of transcription by RNA polymerase II  (IMP,ISO)
positive regulation of transcription, DNA-templated  (IMP)
protein deacetylation  (ISO)
regulation of cardiac muscle contraction by calcium ion signaling  (IMP)
regulation of gene expression, epigenetic  (ISO)
regulation of protein binding  (ISO)
regulation of skeletal muscle fiber development  (IGI)
regulation of striated muscle cell differentiation  (IGI)
response to denervation involved in regulation of muscle adaptation  (IMP)
response to drug  (ISO)
response to interleukin-1  (ISO)
skeletal system development  (IMP)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Abu-Farha M, etal., PLoS One. 2013 Sep 24;8(9):e75342. doi: 10.1371/journal.pone.0075342. eCollection 2013.
2. Bers DM Heart Rhythm. 2011 Jul;8(7):1101-4. doi: 10.1016/j.hrthm.2011.01.030. Epub 2011 Jan 18.
3. Bricceno KV, etal., Hum Mol Genet. 2012 Oct 15;21(20):4448-59. Epub 2012 Jul 13.
4. Bruneteau G, etal., Brain. 2013 Aug;136(Pt 8):2359-68. doi: 10.1093/brain/awt164. Epub 2013 Jul 3.
5. Chen B and Cepko CL, Science. 2009 Jan 9;323(5911):256-9. doi: 10.1126/science.1166226.
6. Cui H, etal., J Clin Invest. 2013 Nov 1;123(11):4706-13.
7. Fang J, etal., Neurol Sci. 2014 Feb;35(2):283-8. doi: 10.1007/s10072-013-1508-4. Epub 2013 Aug 8.
8. Gordon JW, etal., J Biol Chem. 2009 Jul 10;284(28):19027-42. doi: 10.1074/jbc.M109.000539. Epub 2009 Apr 23.
9. Gruhn B, etal., Leuk Res. 2013 Oct;37(10):1200-7. doi: 10.1016/j.leukres.2013.07.016. Epub 2013 Aug 12.
10. Hannan JL, etal., J Sex Med. 2014 Jun;11(6):1442-51. doi: 10.1111/jsm.12522. Epub 2014 Mar 18.
11. He M, etal., J Cell Mol Med. 2013 Apr;17(4):531-42. doi: 10.1111/jcmm.12040. Epub 2013 Mar 11.
12. Kassis H, etal., Neurochem Int. 2014 Nov;77:17-23. doi: 10.1016/j.neuint.2014.03.006. Epub 2014 Mar 19.
13. Li J, etal., Nat Med. 2012 May;18(5):783-90. doi: 10.1038/nm.2709.
14. MGD data from the GO Consortium
15. MGD IEA
16. Noh H, etal., Am J Physiol Renal Physiol. 2009 Sep;297(3):F729-39. doi: 10.1152/ajprenal.00086.2009. Epub 2009 Jun 24.
17. OMIM Disease Annotation Pipeline
18. Peserico A and Simone C, J Biomed Biotechnol. 2011;2011:371832. doi: 10.1155/2011/371832. Epub 2010 Dec 5.
19. Rajan I, etal., PLoS One. 2009 Aug 12;4(8):e6612. doi: 10.1371/journal.pone.0006612.
20. RGD automated import pipeline
21. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
22. RGD automated import pipeline for gene-chemical interactions
23. Wang X, etal., Kidney Int. 2014 Oct;86(4):712-25. doi: 10.1038/ki.2014.111. Epub 2014 Apr 9.
24. Yuan JH, etal., Hepatology. 2011 Dec;54(6):2025-35. doi: 10.1002/hep.24606.
25. Zhao L, etal., Circulation. 2012 Jul 24;126(4):455-67. doi: 10.1161/CIRCULATIONAHA.112.103176. Epub 2012 Jun 18.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10737771   PMID:10748098   PMID:10958686   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002  
PMID:12904583   PMID:14576337   PMID:14610273   PMID:15367668   PMID:15489334   PMID:15537544   PMID:15601857   PMID:15741177   PMID:15743821   PMID:15767461   PMID:15782199   PMID:15840001  
PMID:15990875   PMID:16141072   PMID:16141073   PMID:16166628   PMID:16203988   PMID:16236793   PMID:16260608   PMID:16293626   PMID:16397154   PMID:16602821   PMID:16873063   PMID:17038545  
PMID:17336904   PMID:17468767   PMID:17568773   PMID:17761942   PMID:17786239   PMID:17873280   PMID:17923476   PMID:17967808   PMID:18163532   PMID:18250163   PMID:18256189   PMID:18332106  
PMID:18555775   PMID:18632985   PMID:18780762   PMID:18799693   PMID:18824292   PMID:19015268   PMID:19109424   PMID:19412888   PMID:19463978   PMID:19704004   PMID:20007902   PMID:20034059  
PMID:20097749   PMID:20506506   PMID:20719946   PMID:20887891   PMID:20937823   PMID:21118993   PMID:21267068   PMID:21282606   PMID:21324893   PMID:21421818   PMID:21590736   PMID:21731673  
PMID:21884692   PMID:21953612   PMID:22318228   PMID:22403301   PMID:22549777   PMID:22648949   PMID:22658415   PMID:22700976   PMID:22730529   PMID:22875922   PMID:23141539   PMID:23151343  
PMID:23236169   PMID:23239283   PMID:23271793   PMID:23297420   PMID:23434587   PMID:23603510   PMID:23624624   PMID:23652597   PMID:23892436   PMID:23941879   PMID:24023888   PMID:24043307  
PMID:24166750   PMID:24278330   PMID:24302884   PMID:24483844   PMID:24579951   PMID:24675724   PMID:24768298   PMID:24934156   PMID:24944198   PMID:25011550   PMID:25142465   PMID:25187650  
PMID:25205686   PMID:25332236   PMID:25392500   PMID:25447540   PMID:25489064   PMID:25529628   PMID:25728750   PMID:25854767   PMID:25871848   PMID:25903105   PMID:26238735   PMID:26273529  
PMID:26305546   PMID:26357899   PMID:26372908   PMID:26414199   PMID:26437241   PMID:26491230   PMID:26969532   PMID:27068606   PMID:27239042   PMID:27320207   PMID:27333946   PMID:27466189  
PMID:27544482   PMID:27597886   PMID:27626651   PMID:27661135   PMID:27741240   PMID:27759007   PMID:27785754   PMID:27798109   PMID:27875543   PMID:27884425   PMID:28028172   PMID:28106071  
PMID:28177888   PMID:28409622   PMID:28548935   PMID:28588072   PMID:28635037   PMID:28671696   PMID:28688716   PMID:28882900   PMID:29184203   PMID:29227474   PMID:29472387   PMID:29472596  
PMID:29477142   PMID:29529137   PMID:29543863   PMID:29544022   PMID:29632070   PMID:30030465   PMID:30121575   PMID:30134825   PMID:30145794   PMID:30284520   PMID:30319457   PMID:30713114  
PMID:30843886   PMID:30951378   PMID:31040226   PMID:31169064   PMID:31195810   PMID:31273193   PMID:31430259   PMID:31581792   PMID:31600191   PMID:31618641   PMID:32153359   PMID:32325033  
PMID:32612176   PMID:32924161  


Genomics

Comparative Map Data
Hdac4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,856,501 - 92,123,424 (-)NCBIGRCm39mm39
GRCm39 Ensembl191,856,501 - 92,123,421 (-)Ensembl
GRCm38191,928,779 - 92,195,702 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,928,779 - 92,195,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,829,311 - 94,044,970 (-)NCBIGRCm37mm9NCBIm37
MGSCv36193,763,140 - 93,978,799 (-)NCBImm8
Celera194,870,648 - 95,086,759 (-)NCBICelera
Cytogenetic Map1DNCBI
HDAC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2239,048,168 - 239,401,654 (-)EnsemblGRCh38hg38GRCh38
GRCh382239,048,168 - 239,401,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372239,969,864 - 240,323,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,634,801 - 239,987,580 (-)NCBINCBI36hg18NCBI36
Build 342239,706,635 - 240,058,897NCBI
Celera2233,665,663 - 234,017,808 (-)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2231,741,321 - 232,092,211 (-)NCBIHuRef
CHM1_12239,975,706 - 240,328,679 (-)NCBICHM1_1
Hdac4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2992,503,467 - 92,750,164 (-)NCBI
Rnor_6.0 Ensembl999,057,089 - 99,299,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0999,052,945 - 99,299,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0998,727,262 - 98,973,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,147,435 - 91,389,810 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1991,421,635 - 91,447,796 (+)NCBI
Celera990,047,090 - 90,289,214 (-)NCBICelera
Cytogenetic Map9q36NCBI
Hdac4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,629,691 - 1,886,210 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555421,629,691 - 1,886,160 (+)NCBIChiLan1.0ChiLan1.0
HDAC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B245,123,061 - 245,428,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B245,123,061 - 245,427,054 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B126,287,745 - 126,649,815 (-)NCBIMhudiblu_PPA_v0panPan3
HDAC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,318,621 - 49,545,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,317,349 - 49,453,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBI
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBI
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBI
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBI
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBI
Hdac4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,277,349 - 191,488,700 (-)NCBI
SpeTri2.0NW_0049367451,730,743 - 1,942,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15138,381,627 - 138,614,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115138,378,237 - 138,657,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,920,983 - 153,035,106 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HDAC4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110125,098,375 - 125,450,524 (-)NCBI
ChlSab1.1 Ensembl10125,098,366 - 125,403,227 (-)Ensembl
Hdac4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248473,846,196 - 4,101,537 (-)NCBI

Position Markers
D1Mit365  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38192,129,184 - 92,129,282UniSTSGRCm38
MGSCv37194,025,761 - 94,025,859UniSTSGRCm37
Celera195,067,547 - 95,067,645UniSTS
Cytogenetic Map1DUniSTS
cM Map158.5UniSTS
Whitehead Genetic157.9UniSTS
Whitehead/MRC_RH11309.04UniSTS
Whitehead_YAC1 UniSTS
UniSTS:234174  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38191,932,806 - 91,932,930UniSTSGRCm38
MGSCv37193,829,383 - 93,829,507UniSTSGRCm37
Celera194,870,720 - 94,870,844UniSTS
Cytogenetic Map1DUniSTS
UniSTS:234175  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38191,929,336 - 91,929,598UniSTSGRCm38
MGSCv37193,825,913 - 93,826,175UniSTSGRCm37
Celera194,867,250 - 94,867,512UniSTS
Cytogenetic Map1DUniSTS
UniSTS:234176  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38192,039,579 - 92,039,710UniSTSGRCm38
MGSCv37193,936,156 - 93,936,287UniSTSGRCm37
Celera194,977,569 - 94,977,700UniSTS
Cytogenetic Map1DUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15795281891952921Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15795281891952921Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15795281891952921Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15857254792572799Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15857254792572799Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162907596120601949Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167300000129800000Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170205811104211835Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173227055108910684Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73687970107688108Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173687970107688108Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174952818133363199Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17557254793013355Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)176000000128600000Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)176000000148900000Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177146478110608345Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17750000095900000Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179930958113931066Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179930958113931066Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180267876126458780Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782314261147249632Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182665468135687641Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182904910116904910Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182904910116904910Mouse
11667074Led2_mlate embryonic death 2 (mouse)185768306117267351Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186556204120556204Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89858782123858782Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189858782123858782Mouse
4141347Reb1_mrepetitive behavior 1 (mouse)Not determined91540544100485942Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir1a-1mmu-miR-1a-3pMirtarbaseexternal_infoMicroarray//Northern blotFunctional MTI (Weak)16380711
Mir1a-2mmu-miR-1a-3pMirtarbaseexternal_infoMicroarray//Northern blotFunctional MTI (Weak)16380711
Mir10ammu-miR-10a-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI20118242
Mir10ammu-miR-10a-3pMirecordsexternal_infoNANA20118242
Mir206mmu-miR-206-3pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI20007902
Mir140mmu-miR-140-5pMirtarbaseexternal_infoqRT-PCR//Western blotFunctional MTI19734943
Mir140mmu-miR-140-5pMirtarbaseexternal_infoLuciferase reporter assay//Western blotFunctional MTI16828749
Mir140mmu-miR-140-5pTarbaseexternal_infoWesternblitPOSITIVE

Predicted Target Of
Summary Value
Count of predictions:630
Count of miRNA genes:430
Interacting mature miRNAs:512
Transcripts:ENSMUST00000008995, ENSMUST00000097644
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_207225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC109197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC163436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY265337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000008995   ⟹   ENSMUSP00000008995
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,932,757 - 92,148,393 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097644   ⟹   ENSMUSP00000095249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,928,779 - 92,180,341 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185267
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,003,670 - 92,006,860 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185341
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,029,966 - 92,113,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186002   ⟹   ENSMUSP00000141018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,029,955 - 92,180,297 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187308   ⟹   ENSMUSP00000140092
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,955,374 - 91,975,501 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187622
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,030,050 - 92,113,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189303
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,932,958 - 92,006,855 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189730
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,989,051 - 91,992,626 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191327
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl191,933,203 - 91,934,864 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212408
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,030,144 - 92,195,699 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212867
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl192,030,144 - 92,195,694 (-)Ensembl
RefSeq Acc Id: NM_207225   ⟹   NP_997108
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,063 (-)NCBI
GRCm38191,928,779 - 92,180,341 (-)NCBI
MGSCv37193,829,311 - 94,044,970 (-)RGD
Celera194,870,648 - 95,086,759 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529311   ⟹   XP_006529374
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 91,977,801 (-)NCBI
GRCm38191,928,779 - 92,050,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529312   ⟹   XP_006529375
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,045 (-)NCBI
GRCm38191,928,779 - 92,180,323 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529313   ⟹   XP_006529376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,011 (-)NCBI
GRCm38191,928,779 - 92,180,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529314   ⟹   XP_006529377
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,042,362 (-)NCBI
GRCm38191,928,779 - 92,114,640 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006529315   ⟹   XP_006529378
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,068 (-)NCBI
GRCm38191,928,779 - 92,180,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319476   ⟹   XP_017174965
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,058 (-)NCBI
GRCm38191,928,779 - 92,180,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319477   ⟹   XP_017174966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,058 (-)NCBI
GRCm38191,928,779 - 92,180,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319478   ⟹   XP_017174967
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,058 (-)NCBI
GRCm38191,928,779 - 92,180,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319479   ⟹   XP_017174968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,058 (-)NCBI
GRCm38191,928,779 - 92,180,336 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319480   ⟹   XP_017174969
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,123,424 (-)NCBI
GRCm38191,928,779 - 92,195,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319482   ⟹   XP_017174971
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,068 (-)NCBI
GRCm38191,928,779 - 92,180,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319486   ⟹   XP_017174975
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,123,424 (-)NCBI
GRCm38191,928,779 - 92,195,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319487   ⟹   XP_017174976
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,123,424 (-)NCBI
GRCm38191,928,779 - 92,195,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319488   ⟹   XP_017174977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,123,424 (-)NCBI
GRCm38191,928,779 - 92,195,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319498   ⟹   XP_017174987
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,123,412 (-)NCBI
GRCm38191,928,779 - 92,195,652 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319501   ⟹   XP_017174990
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,011 (-)NCBI
GRCm38191,928,779 - 92,180,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252529   ⟹   XP_030108389
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,600 (-)NCBI
GRCm38191,928,779 - 92,180,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252531   ⟹   XP_030108391
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,068 (-)NCBI
GRCm38191,928,779 - 92,180,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252541   ⟹   XP_030108401
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,068 (-)NCBI
GRCm38191,928,779 - 92,180,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252549   ⟹   XP_030108409
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,600 (-)NCBI
GRCm38191,928,779 - 92,180,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252550   ⟹   XP_030108410
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,596 (-)NCBI
GRCm38191,928,779 - 92,180,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252552   ⟹   XP_030108412
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,108,011 (-)NCBI
GRCm38191,928,779 - 92,180,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163125   ⟹   XP_036019018
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,065,776 (-)NCBI
RefSeq Acc Id: XM_036163131   ⟹   XP_036019024
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39191,856,501 - 92,042,362 (-)NCBI
Protein Sequences
Protein RefSeqs NP_997108 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529374 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529375 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529376 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529377 (Get FASTA)   NCBI Sequence Viewer  
  XP_006529378 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174965 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174966 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174967 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174968 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174969 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174971 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174975 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174976 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174977 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174987 (Get FASTA)   NCBI Sequence Viewer  
  XP_017174990 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108389 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108391 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108401 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108409 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108410 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108412 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019018 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019024 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH66052 (Get FASTA)   NCBI Sequence Viewer  
  BAE33147 (Get FASTA)   NCBI Sequence Viewer  
  BAE36877 (Get FASTA)   NCBI Sequence Viewer  
  BAE37989 (Get FASTA)   NCBI Sequence Viewer  
  BAE43272 (Get FASTA)   NCBI Sequence Viewer  
  EDL40017 (Get FASTA)   NCBI Sequence Viewer  
  EDL40018 (Get FASTA)   NCBI Sequence Viewer  
  EDL40019 (Get FASTA)   NCBI Sequence Viewer  
  Q6NZM9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_997108   ⟸   NM_207225
- UniProtKB: Q6NZM9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006529376   ⟸   XM_006529313
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006529375   ⟸   XM_006529312
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006529378   ⟸   XM_006529315
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006529377   ⟸   XM_006529314
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006529374   ⟸   XM_006529311
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017174976   ⟸   XM_017319487
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017174987   ⟸   XM_017319498
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017174977   ⟸   XM_017319488
- Peptide Label: isoform X7
- UniProtKB: Q6NZM9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017174975   ⟸   XM_017319486
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017174969   ⟸   XM_017319480
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017174968   ⟸   XM_017319479
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017174966   ⟸   XM_017319477
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017174967   ⟸   XM_017319478
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017174965   ⟸   XM_017319476
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017174990   ⟸   XM_017319501
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017174971   ⟸   XM_017319482
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030108410   ⟸   XM_030252550
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030108389   ⟸   XM_030252529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108409   ⟸   XM_030252549
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030108401   ⟸   XM_030252541
- Peptide Label: isoform X7
RefSeq Acc Id: XP_030108391   ⟸   XM_030252531
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108412   ⟸   XM_030252552
- Peptide Label: isoform X10
RefSeq Acc Id: ENSMUSP00000141018   ⟸   ENSMUST00000186002
RefSeq Acc Id: ENSMUSP00000008995   ⟸   ENSMUST00000008995
RefSeq Acc Id: ENSMUSP00000140092   ⟸   ENSMUST00000187308
RefSeq Acc Id: ENSMUSP00000095249   ⟸   ENSMUST00000097644
RefSeq Acc Id: XP_036019018   ⟸   XM_036163125
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036019024   ⟸   XM_036163131
- Peptide Label: isoform X8
Protein Domains
HDAC4_Gln   Hist_deacetyl

Promoters
RGD ID:6874496
Promoter ID:EPDNEW_M699
Type:initiation region
Name:Hdac4_1
Description:Mus musculus histone deacetylase 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38192,180,299 - 92,180,359EPDNEW
RGD ID:6817872
Promoter ID:MM_KWN:1637
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000097644
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36193,826,736 - 93,827,236 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3036234 AgrOrtholog
Ensembl Genes ENSMUSG00000026313 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000008995 UniProtKB/Swiss-Prot
  ENSMUSP00000095249 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140092 UniProtKB/TrEMBL
  ENSMUSP00000141018 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000008995 UniProtKB/Swiss-Prot
  ENSMUST00000097644 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000186002 UniProtKB/TrEMBL
  ENSMUST00000187308 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro HDAC4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone_deAcase_II_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:208727 UniProtKB/Swiss-Prot
MGD MGI:3036234 ENTREZGENE
NCBI Gene 208727 ENTREZGENE
PANTHER PTHR45364 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45364:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hdac4 PhenoGen
PIRSF HDAC_II_euk UniProtKB/Swiss-Prot
PRINTS HDASUPER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WQ92_MOUSE UniProtKB/TrEMBL
  A0A087WSF0_MOUSE UniProtKB/TrEMBL
  HDAC4_MOUSE UniProtKB/Swiss-Prot
  Q3TNU8_MOUSE UniProtKB/TrEMBL
  Q6NZM9 ENTREZGENE
UniProt Secondary Q3TRZ9 UniProtKB/Swiss-Prot
  Q3U2J3 UniProtKB/Swiss-Prot
  Q3V3Y4 UniProtKB/Swiss-Prot