HDAC4 (histone deacetylase 4) - Rat Genome Database

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Gene: HDAC4 (histone deacetylase 4) Chlorocebus sabaeus
Analyze
Symbol: HDAC4
Name: histone deacetylase 4
RGD ID: 18539906
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); aortic aneurysm (ortholog); FOUND IN A band (ortholog); chromatin (ortholog); histone deacetylase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110125,098,375 - 125,450,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10125,098,366 - 125,403,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604073,947,227 - 74,329,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green Monkeyacute lymphoblastic leukemia treatmentISOHDAC4 (Homo sapiens)9068941 RGDPMID:23948281 and REF_RGD_ID:9681454
HDAC4Green Monkeyamyotrophic lateral sclerosis severityISOHDAC4 (Homo sapiens)9068941 RGDPMID:23824486 and REF_RGD_ID:9681450
HDAC4Green Monkeyaortic aneurysm  ISOHDAC4 (Homo sapiens)9068941mRNA:decreased expression:aorta:RGDPMID:19389706 and REF_RGD_ID:9681448
HDAC4Green Monkeyataxia telangiectasia treatmentISOHDAC4 (Homo sapiens)9068941 RGDPMID:22466704 and REF_RGD_ID:9681455
HDAC4Green Monkeyataxia telangiectasia  ISOHdac4 (Mus musculus)9068941protein:altered localization:nucleus:RGDPMID:22466704 and REF_RGD_ID:9681455
HDAC4Green Monkeyataxia telangiectasia  ISOHDAC4 (Homo sapiens)9068941protein:altered localization:nucleus:RGDPMID:22466704 and REF_RGD_ID:9681455
HDAC4Green Monkeyatherosclerosis amelioratesISOHdac4 (Mus musculus)9068941 RGDPMID:35854140 and REF_RGD_ID:242905195
HDAC4Green MonkeyCarotid Artery Injuries  ISOHdac4 (Rattus norvegicus)9068941protein:increased expression:carotid artery:RGDPMID:19389706 and REF_RGD_ID:9681448
HDAC4Green MonkeyDiabetic Nephropathies  ISOHDAC4 (Homo sapiens)9068941mRNA and protein:increased expression:kidney:RGDPMID:24717296 and REF_RGD_ID:9590311
HDAC4Green MonkeyDiabetic Nephropathies  ISOHdac4 (Rattus norvegicus)9068941mRNA and protein:increased expression:kidney:RGDPMID:24717296 and REF_RGD_ID:9590311
HDAC4Green MonkeyDiabetic Nephropathies treatmentISOHdac4 (Rattus norvegicus)9068941 RGDPMID:24717296 and REF_RGD_ID:9590311
HDAC4Green MonkeyDiabetic Nephropathies  ISOHdac4 (Mus musculus)9068941protein:increased expression:kidney:RGDPMID:24717296 and REF_RGD_ID:9590311
HDAC4Green Monkeyeating disorder  ISOHDAC4 (Homo sapiens)9068941DNA:missense mutation:cds:RGDPMID:24216484 and REF_RGD_ID:9681452
HDAC4Green Monkeyepilepsy  ISOHdac4 (Mus musculus)9068941 RGDPMID:19672313 and REF_RGD_ID:9681457
HDAC4Green MonkeyExperimental Diabetes Mellitus  ISOHdac4 (Rattus norvegicus)9068941protein:increased activity:renal cortex:RGDPMID:19553350 and REF_RGD_ID:9590229
HDAC4Green Monkeyfetal alcohol spectrum disorder  ISOHdac4 (Rattus norvegicus)9068941mRNA and protein:increased expression:pituitary gland (rat)RGDPMID:26509893 and REF_RGD_ID:11344152
HDAC4Green MonkeyFibrosis  ISOHdac4 (Rattus norvegicus)9068941protein:increased expression:penis:RGDPMID:24636283 and REF_RGD_ID:9590194
HDAC4Green Monkeyhepatocellular carcinoma  ISOHDAC4 (Homo sapiens)9068941mRNA:increased expression:liver:RGDPMID:21837748 and REF_RGD_ID:9681451
HDAC4Green MonkeyHypoalgesia  ISOHdac4 (Mus musculus)9068941 RGDPMID:19672313 and REF_RGD_ID:9681457
HDAC4Green Monkeyimpotence  ISOHDAC4 (Homo sapiens)9068941protein:increased expression:penis:RGDPMID:24636283 and REF_RGD_ID:9590194
1 to 20 of 27 rows
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green MonkeyBethlem Myopathy 1A  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Bethlem myopathy 1AClinVarPMID:26004199 and PMID:28492532
HDAC4Green Monkeybrachydactyly type E1  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Brachydactyly syndrome type EClinVarPMID:10958686 more ...
HDAC4Green Monkeychromosome 2q37 deletion syndrome  ISOHDAC4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10958686 more ...
HDAC4Green MonkeyD-2-hydroxyglutaric aciduria 1  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: D-2-hydroxyglutaric aciduria 1ClinVarPMID:16081310 more ...
HDAC4Green Monkeygenetic disease  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10958686 more ...
HDAC4Green Monkeyhereditary spastic paraplegia 30  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 30ClinVarPMID:16081310 more ...
HDAC4Green Monkeyintellectual disability  ISOHDAC4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10958686 more ...
HDAC4Green Monkeymicrocephaly  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868
HDAC4Green Monkeymultiple myeloma  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple myelomaClinVar 
HDAC4Green MonkeyNEURODEVELOPMENTAL DISORDER WITH CENTRAL HYPOTONIA AND DYSMORPHIC FACIES  ISOHDAC4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10958686 more ...
HDAC4Green MonkeyNeurodevelopmental Disorders  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental abnormalityClinVar 
HDAC4Green Monkeyprimary hyperoxaluria type 1  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary hyperoxaluria and type IClinVarPMID:22821680
HDAC4Green Monkeysyndromic intellectual disability  ISOHDAC4 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic intellectual disabilityClinVar 
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green Monkeybrachydactyly  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20691407
HDAC4Green MonkeyBrachydactyly, Type E  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:24715439
HDAC4Green MonkeyCocaine-Related Disorders  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: therapeuticCTDPMID:17988634
HDAC4Green Monkeycontact dermatitis  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25724174
HDAC4Green MonkeyDiabetes Complications  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:35554780
HDAC4Green Monkeymalignant mesothelioma  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:25756049
HDAC4Green Monkeyprimary pulmonary hypertension  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:22711276
HDAC4Green Monkeyurinary bladder cancer  ISOHDAC4 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21507255
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green Monkeyeating disorder  ISOHdac4 (Mus musculus)9068941 MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
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Original Reference(s)
HDAC4Green MonkeyNEURODEVELOPMENTAL DISORDER WITH CENTRAL HYPOTONIA AND DYSMORPHIC FACIES  ISOHDAC4 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 41 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green Monkeycell population proliferation acts_upstream_ofIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeycellular response to mechanical stimulus  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:19261284 and REF_RGD_ID:9590196
HDAC4Green Monkeycellular response to parathyroid hormone stimulus  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:20097749 and REF_RGD_ID:9681006
HDAC4Green Monkeycellular response to tumor necrosis factor  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:22389387 and REF_RGD_ID:9681445
HDAC4Green Monkeychromatin organization involved_inIEAUniProtKB-KW:KW-0156150520179 UniProtGO_REF:0000043
HDAC4Green Monkeychromatin remodeling involved_inISOHDAC4 (Homo sapiens)9068941 PMID:18850004BHF-UCLPMID:18850004
HDAC4Green Monkeynegative regulation of cell population proliferation acts_upstream_of_or_withinIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynegative regulation of DNA-templated transcription acts_upstream_of_or_withinIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynegative regulation of gene expression, epigenetic involved_inISOHDAC4 (Homo sapiens)9068941 PMID:18850004 and PMID:24413532BHF-UCLPMID:18850004 and PMID:24413532
HDAC4Green Monkeynegative regulation of gene expression, epigenetic involved_inISOHDAC4 (Homo sapiens)9068941 PMID:10869435BHF-UCLPMID:10869435
HDAC4Green Monkeynegative regulation of glycolytic process involved_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynegative regulation of miRNA transcription involved_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynegative regulation of myotube differentiation involved_inISOHDAC4 (Homo sapiens)9068941 PMID:10983972BHF-UCLPMID:10983972
HDAC4Green Monkeynegative regulation of osteoblast differentiation acts_upstream_of_or_withinIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynegative regulation of transcription by competitive promoter binding involved_inISOHDAC4 (Homo sapiens)9068941 PMID:19276356BHF-UCLPMID:19276356
HDAC4Green Monkeynegative regulation of transcription by RNA polymerase II involved_inIEAInterPro:IPR046949150520179 InterProGO_REF:0000002
HDAC4Green Monkeynegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeyosteoblast development acts_upstream_of_or_withinIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeyosteoblast differentiation acts_upstream_ofIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeypeptidyl-lysine deacetylation involved_inISOHDAC4 (Homo sapiens)9068941 PMID:18614528BHF-UCLPMID:18614528
1 to 20 of 41 rows

Cellular Component
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green MonkeyA band located_inISOHdac4 (Rattus norvegicus)9068941PMID:18250163MGIPMID:18250163 and REF_RGD_ID:2306453
HDAC4Green Monkeyactomyosin located_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeychromatin is_active_inISOHDAC4 (Homo sapiens)9068941 PMID:31127039UniProtPMID:31127039
HDAC4Green Monkeycytoplasm located_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeycytosol located_inIEAUniProtKB:A0A7I2SVS4 more ...150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeyhistone deacetylase complex part_ofISOHDAC4 (Homo sapiens)9068941 PMID:11804585BHF-UCLPMID:11804585
HDAC4Green Monkeyneuromuscular junction located_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynuclear speck located_inIEAUniProtKB:A0A7I2SVS4 and ensembl:ENSP00000440481150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynucleoplasm located_inIEAUniProtKB:A0A7I2SVS4 and ensembl:ENSP00000440481150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynucleus located_inIEAUniRule:UR000135806150520179 UniProtGO_REF:0000104
HDAC4Green Monkeynucleus located_inIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeynucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
HDAC4Green Monkeynucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
HDAC4Green Monkeyprotein-containing complex  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:22360269 and REF_RGD_ID:7241148
HDAC4Green Monkeysarcomere  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:18250163 and REF_RGD_ID:2306453
HDAC4Green Monkeysarcomere located_inISOHdac4 (Rattus norvegicus)9068941PMID:18250163MGIPMID:18250163 and REF_RGD_ID:2306453
HDAC4Green Monkeytranscription repressor complex part_ofISOHDAC4 (Homo sapiens)9068941 PMID:11804585BHF-UCLPMID:11804585
HDAC4Green MonkeyZ disc located_inISOHdac4 (Rattus norvegicus)9068941PMID:18250163MGIPMID:18250163 and REF_RGD_ID:2306453
1 to 18 of 18 rows

Molecular Function
1 to 20 of 75 rows

  
Object Symbol
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Term
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Evidence
With
Reference
Notes
Source
Original Reference(s)
HDAC4Green Monkeychromatin binding enablesIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green MonkeyDNA binding enablesIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green MonkeyDNA-binding transcription activator activity enablesISOHDAC4 (Homo sapiens)9068941 PMID:19071119BHF-UCLPMID:19071119
HDAC4Green MonkeyDNA-binding transcription factor binding enablesIEAUniProtKB:Q6NZM9 and ensembl:ENSMUSP00000095249150520179 EnsemblGO_REF:0000107
HDAC4Green Monkeyhistone binding contributes_toISOHDAC4 (Homo sapiens)9068941 PMID:19276356BHF-UCLPMID:19276356
HDAC4Green Monkeyhistone deacetylase activity enablesIEAUniRule:UR000135806150520179 UniProtGO_REF:0000104
HDAC4Green Monkeyhistone deacetylase activity enablesIEAInterPro:IPR046949150520179 InterProGO_REF:0000002
HDAC4Green Monkeyhistone deacetylase activity, hydrolytic mechanism enablesIEAEC:3.5.1.98150520179 UniProtGO_REF:0000003
HDAC4Green Monkeyhistone deacetylase activity, hydrolytic mechanism enablesIEARHEA:58196150520179 RHEAGO_REF:0000116
HDAC4Green Monkeyhistone deacetylase binding enablesISOUniProtKB:Q9UKV09068941 PMID:12590135BHF-UCLPMID:12590135
HDAC4Green Monkeyhistone deacetylase binding enablesISOUniProtKB:O153799068941 PMID:10869435BHF-UCLPMID:10869435
HDAC4Green Monkeyhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
HDAC4Green Monkeyidentical protein binding enablesISOUniProtKB:P565249068941 PMID:17360518IntActPMID:17360518
HDAC4Green Monkeymetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
HDAC4Green Monkeymolecular adaptor activity enablesISOHDAC4 (Homo sapiens)9068941 PMID:31127039UniProtPMID:31127039
HDAC4Green Monkeypotassium ion binding enablesISOHDAC4 (Homo sapiens)9068941 PMID:18614528BHF-UCLPMID:18614528
HDAC4Green Monkeypromoter-specific chromatin binding  ISOHdac4 (Rattus norvegicus)9068941 RGDPMID:21586557 and REF_RGD_ID:7241147
HDAC4Green Monkeyprotein binding enablesISOPR:Q087759068941 PMID:15537544MGIPMID:15537544
HDAC4Green Monkeyprotein binding enablesISOUniProtKB:P619819068941 PMID:39251607IntActPMID:39251607
HDAC4Green Monkeyprotein binding enablesISOPR:O891149068941 PMID:18555775MGIPMID:18555775
1 to 20 of 75 rows

RGD Manual Annotations


  
PMID:22301074   PMID:30032202  



HDAC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110125,098,375 - 125,450,524 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10125,098,366 - 125,403,227 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604073,947,227 - 74,329,237 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HDAC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,193,331 - 239,195,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh382239,048,168 - 239,401,649 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,048,168 - 239,401,654 (-)EnsemblGRCh38hg38GRCh38
GRCh372239,969,864 - 240,323,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,634,801 - 239,987,580 (-)NCBINCBI36Build 36hg18NCBI36
Build 342239,706,635 - 240,058,897NCBI
Celera2233,665,663 - 234,017,808 (-)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2231,741,321 - 232,092,211 (-)NCBIHuRef
CHM1_12239,975,706 - 240,328,679 (-)NCBICHM1_1
T2T-CHM13v2.02239,684,488 - 239,686,614 (-)NCBIT2T-CHM13v2.0
T2T-CHM13v2.02239,539,541 - 239,892,233 (-)NCBIT2T-CHM13v2.0
Hdac4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,856,501 - 92,123,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,856,501 - 92,123,421 (-)EnsemblGRCm39 Ensembl
GRCm38191,928,779 - 92,195,702 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,928,779 - 92,195,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv37193,829,311 - 94,044,970 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,763,140 - 93,978,799 (-)NCBIMGSCv36mm8
Celera194,870,648 - 95,086,759 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.24NCBI
Hdac4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,950,972 - 100,200,994 (-)NCBIGRCr8
mRatBN7.2992,503,467 - 92,750,164 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,507,611 - 92,750,164 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,941,905 - 101,184,435 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,077,667 - 106,320,195 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,435,308 - 104,677,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,052,945 - 99,299,715 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,057,089 - 99,299,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,727,262 - 98,973,829 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,147,435 - 91,389,810 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1991,421,635 - 91,447,796 (+)NCBI
Celera990,047,090 - 90,289,214 (-)NCBICelera
Cytogenetic Map9q36NCBI
Hdac4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555421,629,691 - 1,886,210 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555421,629,691 - 1,886,160 (+)NCBIChiLan1.0ChiLan1.0
HDAC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213141,692,632 - 142,055,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B141,707,597 - 142,070,660 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B126,287,745 - 126,649,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B245,123,061 - 245,428,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B245,123,061 - 245,427,054 (-)Ensemblpanpan1.1panPan2
HDAC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12549,318,621 - 49,545,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2549,317,349 - 49,453,478 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2549,810,705 - 50,083,929 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,702,537 - 49,976,665 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,706,181 - 49,977,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,576,470 - 49,848,695 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02549,364,978 - 49,638,565 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,597,454 - 49,869,914 (-)NCBIUU_Cfam_GSD_1.0
Hdac4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303191,277,349 - 191,488,700 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367451,730,694 - 1,942,074 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367451,730,743 - 1,942,071 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDAC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15138,381,635 - 138,614,301 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115138,378,237 - 138,657,266 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,920,983 - 153,035,106 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Hdac4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,845,858 - 4,101,487 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,846,196 - 4,101,537 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in HDAC4
10110 total Variants



ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20


1 to 24 of 24 rows
RefSeq Transcripts XM_007966859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007966874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038001296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENSCSAT00000004048   ⟹   ENSCSAP00000002314
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl10125,098,366 - 125,403,227 (-)Ensembl
RefSeq Acc Id: XM_007966864   ⟹   XP_007965055
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110125,098,375 - 125,449,934 (-)NCBI
Vero_WHO_p1.0NW_02366604073,947,828 - 74,329,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007966865   ⟹   XP_007965056
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110125,098,375 - 125,450,524 (-)NCBI
Vero_WHO_p1.0NW_02366604073,947,227 - 74,329,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007966868   ⟹   XP_007965059
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110125,098,375 - 125,326,697 (-)NCBI
Vero_WHO_p1.0NW_02366604074,071,127 - 74,329,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007966869   ⟹   XP_007965060
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110125,098,375 - 125,365,518 (-)NCBI
Vero_WHO_p1.0NW_02366604074,037,170 - 74,329,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007966871   ⟹   XP_007965062
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.110125,098,375 - 125,322,436 (-)NCBI
Vero_WHO_p1.0NW_02366604074,075,270 - 74,329,237 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038001289   ⟹   XP_037857217
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604073,948,449 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001290   ⟹   XP_037857218
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604073,948,449 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001291   ⟹   XP_037857219
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604073,948,448 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001293   ⟹   XP_037857221
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604073,948,449 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001294   ⟹   XP_037857222
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604074,069,667 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001295   ⟹   XP_037857223
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604074,059,801 - 74,329,237 (+)NCBI
RefSeq Acc Id: XM_038001296   ⟹   XP_037857224
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604073,948,446 - 74,329,237 (+)NCBI
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: XP_007965056   ⟸   XM_007966865
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R125 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007965055   ⟸   XM_007966864
- Peptide Label: isoform X1
- UniProtKB: A0A0D9R125 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007965060   ⟸   XM_007966869
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R125 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007965059   ⟸   XM_007966868
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R125 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007965062   ⟸   XM_007966871
- Peptide Label: isoform X5
- UniProtKB: A0A0D9R125 (UniProtKB/TrEMBL)



1 to 19 of 19 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCSAG00000006011 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004048.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.800.20 UniProtKB/TrEMBL
  6.10.250.1550 UniProtKB/TrEMBL
InterPro HDAC4/5/7/9 UniProtKB/TrEMBL
  His_deacetylse UniProtKB/TrEMBL
  His_deacetylse_dom UniProtKB/TrEMBL
  His_deacetylse_dom_sf UniProtKB/TrEMBL
  Hist_deacetylase_Gln_rich_N UniProtKB/TrEMBL
  Ureohydrolase_dom_sf UniProtKB/TrEMBL
NCBI Gene HDAC4 ENTREZGENE
PANTHER HISTONE DEACETYLASE UniProtKB/TrEMBL
  PTHR45364 UniProtKB/TrEMBL
Pfam HDAC4_Gln UniProtKB/TrEMBL
  Hist_deacetyl UniProtKB/TrEMBL
PIRSF HDAC_II_euk UniProtKB/TrEMBL
PRINTS HDASUPER UniProtKB/TrEMBL
Superfamily-SCOP SSF52768 UniProtKB/TrEMBL
UniProt A0A0D9R125 ENTREZGENE, UniProtKB/TrEMBL
1 to 19 of 19 rows