Tet3 (tet methylcytosine dioxygenase 3) - Rat Genome Database

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Gene: Tet3 (tet methylcytosine dioxygenase 3) Chinchilla lanigera
Analyze
Symbol: Tet3
Name: tet methylcytosine dioxygenase 3
RGD ID: 8991466
Description: ENCODES a protein that exhibits methyl-CpG binding (ortholog); methylcytosine dioxygenase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN DNA demethylation (ortholog); DNA demethylation of male pronucleus (ortholog); histone H3-K4 trimethylation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Beck-Fahrner Syndrome (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); female pronucleus (ortholog); male pronucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: methylcytosine dioxygenase TET3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,714,203 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,612,124 - 11,722,130 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Tet3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,714,203 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,612,124 - 11,722,130 (-)NCBIChiLan1.0ChiLan1.0
TET3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl273,984,910 - 74,108,176 (+)EnsemblGRCh38hg38GRCh38
GRCh38273,982,036 - 74,135,394 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37274,212,037 - 74,335,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,126,958 - 74,188,811 (+)NCBINCBI36hg18NCBI36
Celera274,104,908 - 74,166,519 (+)NCBI
Cytogenetic Map2p13.1NCBI
HuRef274,009,368 - 74,071,589 (+)NCBIHuRef
CHM1_1274,202,763 - 74,264,628 (+)NCBICHM1_1
Tet3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,339,355 - 83,434,190 (-)NCBIGRCm39mm39
GRCm39 Ensembl683,339,355 - 83,436,066 (-)Ensembl
GRCm38683,362,373 - 83,457,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,362,373 - 83,459,084 (-)EnsemblGRCm38mm10GRCm38
MGSCv37683,312,367 - 83,391,672 (-)NCBIGRCm37mm9NCBIm37
MGSCv36683,328,031 - 83,424,742 (-)NCBImm8
Celera685,343,470 - 85,422,764 (-)NCBICelera
Cytogenetic Map6C3NCBI
Tet3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24115,867,412 - 115,964,433 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4115,871,265 - 115,964,193 (-)Ensembl
Rnor_6.04115,060,702 - 115,160,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,066,309 - 115,157,263 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,650,812 - 179,747,154 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,582,351 - 117,659,282 (-)NCBIRGSC3.4rn4RGSC3.4
Celera4104,861,292 - 104,961,373 (-)NCBICelera
Cytogenetic Map4q34NCBI
TET3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A75,568,636 - 75,688,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,568,636 - 75,682,701 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A74,058,948 - 74,180,046 (+)NCBIMhudiblu_PPA_v0panPan3
TET3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,976,510 - 49,083,454 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,981,558 - 49,082,675 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,617,212 - 48,723,766 (-)NCBI
ROS_Cfam_1.01749,835,903 - 49,942,545 (-)NCBI
UMICH_Zoey_3.11748,851,775 - 48,958,566 (-)NCBI
UNSW_CanFamBas_1.01748,923,668 - 49,025,715 (-)NCBI
UU_Cfam_GSD_1.01749,477,148 - 49,583,958 (-)NCBI
Tet3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,346,237 - 10,447,001 (-)NCBI
SpeTri2.0NW_004936556292,551 - 391,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TET3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,918,933 - 69,020,986 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,918,896 - 69,020,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2372,074,722 - 72,176,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TET3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11433,170,046 - 33,293,128 (-)NCBI
ChlSab1.1 Ensembl1433,176,039 - 33,293,906 (-)Ensembl
Vero_WHO_p1.0NW_02366604578,871,684 - 78,997,138 (+)NCBI
Tet3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474929,371,674 - 29,494,785 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016068   ⟹   ENSCLAP00000015904
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,714,203 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000016069   ⟹   ENSCLAP00000015905
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542411,617,993 - 11,700,241 (-)Ensembl
RefSeq Acc Id: XM_005385528   ⟹   XP_005385585
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,714,406 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005385529   ⟹   XP_005385586
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,714,588 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005385532   ⟹   XP_005385589
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,700,307 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514633   ⟹   XP_013370087
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,720,616 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514634   ⟹   XP_013370088
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,722,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514636   ⟹   XP_013370090
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542411,612,124 - 11,715,731 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005385585   ⟸   XM_005385528
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005385586   ⟸   XM_005385529
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005385589   ⟸   XM_005385532
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013370088   ⟸   XM_013514634
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370087   ⟸   XM_013514633
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370090   ⟸   XM_013514636
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000015904   ⟸   ENSCLAT00000016068
RefSeq Acc Id: ENSCLAP00000015905   ⟸   ENSCLAT00000016069


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010942 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000015904 ENTREZGENE
  ENSCLAP00000015905 ENTREZGENE
Ensembl Transcript ENSCLAT00000016068 ENTREZGENE
  ENSCLAT00000016069 ENTREZGENE
NCBI Gene Tet3 ENTREZGENE