Zfp57 (ZFP57 zinc finger protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Zfp57 (ZFP57 zinc finger protein) Chinchilla lanigera
Analyze
Symbol: Zfp57
Name: ZFP57 zinc finger protein
RGD ID: 8778879
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); double-stranded methylated DNA binding (ortholog); INVOLVED IN DNA methylation involved in embryo development (ortholog); genetic imprinting (ortholog); maintenance of DNA methylation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH diabetes mellitus (ortholog); transient neonatal diabetes mellitus (ortholog); Transient Neonatal Diabetes Mellitus, 1 (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: zinc finger protein 57 homolog; zinc finger protein 92 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
heterochromatin  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Zfp57
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBIChiLan1.0ChiLan1.0
ZFP57
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl629,672,483 - 29,681,155 (-)EnsemblGRCh38hg38GRCh38
GRCh38629,672,392 - 29,681,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37629,640,169 - 29,648,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,748,239 - 29,756,866 (-)NCBINCBI36hg18NCBI36
Celera631,246,246 - 31,251,015 (-)NCBI
Cytogenetic Map6p22.1NCBI
HuRef629,447,209 - 29,452,012 (-)NCBIHuRef
CHM1_1629,642,261 - 29,647,014 (-)NCBICHM1_1
Zfp57
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,307,060 - 37,326,196 (+)NCBIGRCm39mm39
GRCm39 Ensembl1737,312,055 - 37,321,527 (+)Ensembl
GRCm381737,001,163 - 37,010,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,001,163 - 37,010,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371737,138,108 - 37,147,674 (+)NCBIGRCm37mm9NCBIm37
MGSCv361736,610,595 - 36,618,685 (+)NCBImm8
Celera1740,424,834 - 40,434,322 (+)NCBICelera
Cytogenetic Map17B1NCBI
Zfp57
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2201,521,323 - 1,534,884 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl201,521,323 - 1,529,846 (-)Ensembl
Rnor_6.0202,014,177 - 2,020,488 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,014,170 - 2,020,537 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0204,054,802 - 4,061,113 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,611,856 - 1,618,167 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1201,612,083 - 1,617,758 (-)NCBI
Celera202,231,911 - 2,238,222 (-)NCBICelera
Cytogenetic Map20p12NCBI
ZFP57
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1630,134,263 - 30,143,045 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,134,263 - 30,143,045 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0629,476,459 - 29,485,480 (-)NCBIMhudiblu_PPA_v0panPan3
ZFP57
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,267,358 - 26,269,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.03526,575,720 - 26,581,501 (-)NCBI
UMICH_Zoey_3.13526,230,410 - 26,236,187 (-)NCBI
UNSW_CanFamBas_1.03526,291,343 - 26,297,127 (-)NCBI
UU_Cfam_GSD_1.03527,761,408 - 27,767,190 (-)NCBI
Zfp57
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,520,334 - 32,532,225 (-)NCBI
SpeTri2.0NW_0049367231,063,969 - 1,069,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP57
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,605,125 - 22,612,064 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,607,420 - 22,612,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,016,155 - 25,020,986 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP57
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,942,002 - 42,947,064 (+)NCBI
Vero_WHO_p1.0NW_02366604429,201,143 - 29,205,907 (-)NCBI
Zfp57
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475425,390,107 - 25,397,205 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013509770   ⟹   XP_013365224
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955583151,338 - 154,827 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365224 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013365224   ⟸   XM_013509770
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102028920 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Zfp57  ZFP57 zinc finger protein  LOC102028920  zinc finger protein 92 homolog  Symbol and/or name change 5135510 APPROVED