Xrcc2 (X-ray repair cross complementing 2) - Rat Genome Database

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Gene: Xrcc2 (X-ray repair cross complementing 2) Chinchilla lanigera
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Symbol: Xrcc2
Name: X-ray repair cross complementing 2
RGD ID: 8741032
Description: ENCODES a protein that exhibits four-way junction DNA binding (ortholog); INVOLVED IN centrosome cycle (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH autistic disorder (ortholog); breast carcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN centrosome (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair protein XRCC2; X-ray repair complementing defective repair in Chinese hamster cells 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554916,599,085 - 6,629,439 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554916,579,443 - 6,629,410 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Xrcc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554916,599,085 - 6,629,439 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554916,579,443 - 6,629,410 (-)NCBIChiLan1.0ChiLan1.0
XRCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387152,644,776 - 152,676,141 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7152,644,776 - 152,676,193 (-)EnsemblGRCh38hg38GRCh38
GRCh377152,341,861 - 152,373,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367151,974,516 - 152,004,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 347151,781,236 - 151,810,898NCBI
Celera7146,907,598 - 146,937,489 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7146,154,439 - 146,184,018 (-)NCBIHuRef
CHM1_17152,351,916 - 152,381,649 (-)NCBICHM1_1
T2T-CHM13v2.07153,818,164 - 153,849,721 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27151,670,667 - 151,700,330 (-)NCBI
Xrcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39525,894,812 - 25,910,795 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl525,894,810 - 25,910,823 (-)EnsemblGRCm39 Ensembl
GRCm38525,689,814 - 25,705,797 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl525,689,812 - 25,705,825 (-)EnsemblGRCm38mm10GRCm38
MGSCv37525,195,632 - 25,211,615 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36525,199,879 - 25,215,862 (-)NCBIMGSCv36mm8
Celera522,629,689 - 22,645,599 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map512.35NCBI
Xrcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8410,157,130 - 10,237,089 (+)NCBIGRCr8
mRatBN7.249,423,873 - 9,502,980 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl49,423,898 - 9,442,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx414,422,073 - 14,440,537 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0410,236,354 - 10,254,818 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.048,587,370 - 8,605,854 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.045,842,013 - 5,860,516 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl45,841,998 - 5,860,527 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.045,865,989 - 5,884,492 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.444,817,222 - 4,835,725 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4876,632 - 895,138 (-)NCBICelera
Cytogenetic Map4q11NCBI
XRCC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26189,063,506 - 189,091,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1741,073,530 - 41,101,676 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07144,229,031 - 144,256,854 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17156,378,685 - 156,406,516 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7156,378,685 - 156,406,516 (-)Ensemblpanpan1.1panPan2
XRCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11616,402,821 - 16,429,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1616,402,933 - 16,429,037 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1617,019,573 - 17,045,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01618,134,572 - 18,160,367 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1618,134,726 - 18,160,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11616,507,780 - 16,533,550 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01617,088,510 - 17,114,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01617,139,622 - 17,165,358 (-)NCBIUU_Cfam_GSD_1.0
Xrcc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051185,118,065 - 5,142,946 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365277,760,719 - 7,785,391 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365277,760,609 - 7,785,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XRCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl184,808,470 - 4,835,802 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1184,808,428 - 4,834,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2184,937,262 - 5,312,081 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XRCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121120,795,188 - 120,827,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21120,795,212 - 120,827,706 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607216,791,808 - 16,824,354 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Xrcc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248004,355,539 - 4,390,016 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248004,352,566 - 4,389,707 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003241   ⟹   ENSCLAP00000003177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554916,599,085 - 6,629,439 (-)Ensembl
RefSeq Acc Id: XM_005404847   ⟹   XP_005404904
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554916,603,061 - 6,629,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005404851   ⟹   XP_005404908
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554916,603,061 - 6,629,410 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013504663   ⟹   XP_013360117
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554916,579,443 - 6,629,410 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001231241
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554916,587,706 - 6,621,299 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001231242
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554916,587,706 - 6,620,712 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404904 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404908 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360117 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003177
  ENSCLAP00000003177.1
RefSeq Acc Id: XP_005404904   ⟸   XM_005404847
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UPD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404908   ⟸   XM_005404851
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013360117   ⟸   XM_013504663
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000003177   ⟸   ENSCLAT00000003241
Protein Domains
RecA family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003241 ENTREZGENE
  ENSCLAT00000003241.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DNA_recomb/repair_Rad51_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RecA_ATP-bd UniProtKB/TrEMBL
  XRCC2 UniProtKB/TrEMBL
NCBI Gene Xrcc2 ENTREZGENE
PANTHER DNA REPAIR PROTEIN XRCC2 UniProtKB/TrEMBL
  PTHR46644 UniProtKB/TrEMBL
Pfam Rad51 UniProtKB/TrEMBL
PROSITE RECA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UPD9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Xrcc2  X-ray repair cross complementing 2    X-ray repair complementing defective repair in Chinese hamster cells 2  Symbol and/or name change 5135510 APPROVED