Chd3 (chromodomain helicase DNA binding protein 3) - Rat Genome Database

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Gene: Chd3 (chromodomain helicase DNA binding protein 3) Chinchilla lanigera
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Symbol: Chd3
Name: chromodomain helicase DNA binding protein 3
RGD ID: 8881689
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN centrosome cycle (ortholog); chromatin organization (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); common variable immunodeficiency (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromodomain-helicase-DNA-binding protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,029,265 - 9,050,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,024,112 - 9,050,062 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,029,265 - 9,050,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,024,112 - 9,050,062 (-)NCBIChiLan1.0ChiLan1.0
CHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,884,796 - 7,912,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,884,796 - 7,912,760 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,788,114 - 7,816,073 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,728,849 - 7,756,246 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,732,833 - 7,756,246NCBI
Celera177,815,816 - 7,843,619 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,683,207 - 7,710,664 (+)NCBIHuRef
CHM1_1177,797,025 - 7,824,854 (+)NCBICHM1_1
T2T-CHM13v2.0177,790,128 - 7,818,165 (+)NCBIT2T-CHM13v2.0
Chd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,234,099 - 69,260,325 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,234,099 - 69,260,232 (-)EnsemblGRCm39 Ensembl
GRCm381169,343,273 - 69,369,499 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,343,273 - 69,369,406 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,156,775 - 69,182,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,159,466 - 69,192,513 (-)NCBIMGSCv36mm8
Celera1176,297,125 - 76,352,461 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.53NCBI
Chd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81054,562,437 - 54,588,842 (-)NCBIGRCr8
mRatBN7.21054,063,629 - 54,090,030 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,063,629 - 54,090,047 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01055,943,467 - 55,970,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1055,943,446 - 55,965,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01055,685,542 - 55,716,144 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,135,930 - 56,166,645 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,150,272 - 56,175,839 (-)NCBI
Celera1053,220,188 - 53,247,010 (-)NCBICelera
Cytogenetic Map10q24NCBI
CHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,482,883 - 15,510,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,448,900 - 17,476,879 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,919,803 - 7,947,787 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,910,644 - 7,934,285 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,910,644 - 7,933,115 (+)Ensemblpanpan1.1panPan2
CHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,747,341 - 32,768,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,747,397 - 32,766,965 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,880,210 - 32,905,018 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,846,037 - 32,870,843 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,846,060 - 32,870,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,813,756 - 32,838,554 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,769,803 - 32,794,593 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,948,914 - 32,973,715 (+)NCBIUU_Cfam_GSD_1.0
Chd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,629,303 - 47,680,427 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365951,130,078 - 1,157,822 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365951,131,198 - 1,154,615 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,139,366 - 53,163,243 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,135,767 - 53,163,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,505,273 - 55,529,558 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,274,634 - 7,300,831 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl167,276,850 - 7,300,832 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,106,880 - 14,135,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000015440   ⟹   ENSCLAP00000015280
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554679,029,265 - 9,050,062 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015441   ⟹   ENSCLAP00000015281
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554679,029,367 - 9,050,718 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015442   ⟹   ENSCLAP00000015282
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554679,029,367 - 9,050,060 (-)Ensembl
RefSeq Acc Id: XM_013522050   ⟹   XP_013377504
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,028,225 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522051   ⟹   XP_013377505
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,028,225 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522052   ⟹   XP_013377506
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,028,225 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522053   ⟹   XP_013377507
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,028,225 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522054   ⟹   XP_013377508
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,024,659 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522055   ⟹   XP_013377509
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,024,112 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522056   ⟹   XP_013377510
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,029,265 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522057   ⟹   XP_013377511
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,028,225 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522058   ⟹   XP_013377512
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,030,735 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522059   ⟹   XP_013377513
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554679,024,112 - 9,050,062 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013377513   ⟸   XM_013522059
- Peptide Label: isoform X10
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377509   ⟸   XM_013522055
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377508   ⟸   XM_013522054
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377506   ⟸   XM_013522052
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377507   ⟸   XM_013522053
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377505   ⟸   XM_013522051
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377511   ⟸   XM_013522057
- Peptide Label: isoform X8
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377504   ⟸   XM_013522050
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377510   ⟸   XM_013522056
- Peptide Label: isoform X7
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377512   ⟸   XM_013522058
- Peptide Label: isoform X9
- UniProtKB: A0A8C2VNP3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015281   ⟸   ENSCLAT00000015441
RefSeq Acc Id: ENSCLAP00000015280   ⟸   ENSCLAT00000015440
RefSeq Acc Id: ENSCLAP00000015282   ⟸   ENSCLAT00000015442

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015440 ENTREZGENE
  ENSCLAT00000015440.1 UniProtKB/TrEMBL
  ENSCLAT00000015441.1 UniProtKB/TrEMBL
  ENSCLAT00000015442.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
  2.40.50.40 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro CHD_C2 UniProtKB/TrEMBL
  CHD_II_SANT-like UniProtKB/TrEMBL
  CHD_N UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Chd3 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3 UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/TrEMBL
Pfam CHDCT2 UniProtKB/TrEMBL
  CHDNT UniProtKB/TrEMBL
  Chromo UniProtKB/TrEMBL
  DUF1086 UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  SNF2-rel_dom UniProtKB/TrEMBL
PROSITE CHROMO_2 UniProtKB/TrEMBL
  DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART CHROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  DUF1086 UniProtKB/TrEMBL
  DUF1087 UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A8C2VIH8_CHILA UniProtKB/TrEMBL
  A0A8C2VKF0_CHILA UniProtKB/TrEMBL
  A0A8C2VNP3 ENTREZGENE, UniProtKB/TrEMBL