Aptx (aprataxin) - Rat Genome Database
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Gene: Aptx (aprataxin) Chinchilla lanigera
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Symbol: Aptx
Name: aprataxin
RGD ID: 8747629
Description: ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); DNA 5'-adenosine monophosphate hydrolase activity (ortholog); INVOLVED IN cellular response to DNA damage stimulus (ortholog); DNA ligation (ortholog); double-strand break repair (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH ataxia with oculomotor apraxia type 1 (ortholog); ataxia with oculomotor apraxia type 2 (ortholog); coenzyme Q10 deficiency disease (ortholog); FOUND IN chromatin (ortholog); nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,652,869 - 2,664,272 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,645,716 - 2,664,394 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Aptx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,652,869 - 2,664,272 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,645,716 - 2,664,394 (+)NCBIChiLan1.0ChiLan1.0
APTX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl932,886,601 - 33,025,130 (-)EnsemblGRCh38hg38GRCh38
GRCh38932,883,872 - 33,025,120 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37932,972,604 - 33,001,639 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37932,972,614 - 33,025,118 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36932,962,608 - 32,991,626 (-)NCBINCBI36hg18NCBI36
Celera932,903,909 - 32,932,925 (-)NCBI
Cytogenetic Map9p21.1NCBI
HuRef932,930,986 - 32,960,001 (-)NCBIHuRef
CHM1_1932,972,285 - 33,001,325 (-)NCBICHM1_1
Aptx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,682,078 - 40,703,206 (-)NCBIGRCm39mm39
GRCm38440,682,078 - 40,721,667 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,682,382 - 40,703,194 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,629,111 - 40,650,220 (-)NCBIGRCm37mm9NCBIm37
MGSCv36440,871,049 - 40,891,858 (-)NCBImm8
Celera440,342,394 - 40,363,460 (-)NCBICelera
Cytogenetic Map4A5NCBI
Aptx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2555,798,896 - 55,822,963 (-)NCBI
Rnor_6.0 Ensembl556,987,909 - 57,008,859 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0556,987,714 - 57,009,481 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0561,521,843 - 61,543,083 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,060,210 - 58,081,165 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1558,060,392 - 58,081,344 (-)NCBI
Celera554,414,271 - 54,435,214 (-)NCBICelera
Cytogenetic Map5q22NCBI
APTX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1933,556,419 - 33,608,416 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,556,419 - 33,585,060 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0932,747,409 - 32,819,270 (-)NCBIMhudiblu_PPA_v0panPan3
APTX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1150,113,073 - 50,132,284 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11150,111,003 - 50,155,937 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Aptx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365241,569,610 - 1,582,103 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APTX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,445,168 - 33,771,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,470,089 - 33,495,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,724,516 - 37,837,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APTX
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11247,239,094 - 47,346,528 (+)NCBI
ChlSab1.1 Ensembl1247,258,798 - 47,287,102 (+)Ensembl
Aptx
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473637,729,624 - 37,757,780 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017936   ⟹   ENSCLAP00000017761
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554722,652,869 - 2,664,272 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000017937   ⟹   ENSCLAP00000017762
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554722,652,872 - 2,664,272 (+)Ensembl
RefSeq Acc Id: XM_005401112   ⟹   XP_005401169
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554722,645,855 - 2,664,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005401113   ⟹   XP_005401170
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554722,645,716 - 2,664,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013523036   ⟹   XP_013378490
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554722,645,757 - 2,664,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013523037   ⟹   XP_013378491
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554722,648,567 - 2,664,394 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401169 (Get FASTA)   NCBI Sequence Viewer  
  XP_005401170 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378490 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378491 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005401170   ⟸   XM_005401113
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005401169   ⟸   XM_005401112
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013378490   ⟸   XM_013523036
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013378491   ⟸   XM_013523037
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000017761   ⟸   ENSCLAT00000017936
RefSeq Acc Id: ENSCLAP00000017762   ⟸   ENSCLAT00000017937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012185 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017761 ENTREZGENE
Ensembl Transcript ENSCLAT00000017936 ENTREZGENE
NCBI Gene Aptx ENTREZGENE