Ehmt1 (euchromatic histone lysine methyltransferase 1) - Rat Genome Database

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Gene: Ehmt1 (euchromatic histone lysine methyltransferase 1) Chinchilla lanigera
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Symbol: Ehmt1
Name: euchromatic histone lysine methyltransferase 1
RGD ID: 8749136
Description: ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); histone methyltransferase activity (H3-K27 specific) (ortholog); histone methyltransferase activity (H3-K9 specific) (ortholog); INVOLVED IN chromatin organization (ortholog); DNA methylation (ortholog); histone methylation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autosomal dominant non-syndromic intellectual disability 8 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: euchromatic histone-lysine N-methyltransferase 1; histone-lysine N-methyltransferase EHMT1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Ehmt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBIChiLan1.0ChiLan1.0
EHMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9137,618,992 - 137,870,016 (+)EnsemblGRCh38hg38GRCh38
GRCh389137,619,001 - 137,836,127 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379140,513,457 - 140,730,579 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,725,238 - 139,850,400 (+)NCBINCBI36hg18NCBI36
Build 349137,881,253 - 138,006,413NCBI
Celera9111,130,415 - 111,256,878 (+)NCBI
Cytogenetic Map9q34.3NCBI
HuRef9109,975,406 - 110,193,755 (+)NCBIHuRef
CHM1_19140,662,174 - 140,878,710 (+)NCBICHM1_1
Ehmt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,680,781 - 24,809,658 (-)NCBIGRCm39mm39
GRCm39 Ensembl224,679,940 - 24,809,626 (-)Ensembl
GRCm38224,790,769 - 24,919,643 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl224,789,928 - 24,919,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv37224,646,293 - 24,742,591 (-)NCBIGRCm37mm9NCBIm37
MGSCv36224,612,804 - 24,741,610 (-)NCBImm8
Celera224,513,068 - 24,641,644 (-)NCBICelera
Cytogenetic Map2A3NCBI
Ehmt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.237,580,680 - 7,729,046 (-)NCBI
Rnor_6.0 Ensembl31,960,957 - 2,123,820 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.031,966,974 - 2,123,858 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.031,951,004 - 2,106,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,074,136 - 3,169,921 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,074,159 - 3,225,936 (-)NCBI
Celera32,411,864 - 2,558,168 (-)NCBICelera
Cytogenetic Map3p13NCBI
EHMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19137,699,213 - 137,895,564 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,764,950 - 137,895,564 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09108,724,568 - 108,951,077 (+)NCBIMhudiblu_PPA_v0panPan3
EHMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,031,593 - 48,110,954 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,032,709 - 48,175,828 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,218,499 - 47,362,742 (-)NCBI
ROS_Cfam_1.0948,893,204 - 49,037,678 (-)NCBI
UMICH_Zoey_3.1947,669,581 - 47,813,979 (-)NCBI
UNSW_CanFamBas_1.0947,968,987 - 48,113,126 (-)NCBI
UU_Cfam_GSD_1.0948,015,199 - 48,159,643 (-)NCBI
Ehmt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,924,820 - 203,053,478 (+)NCBI
SpeTri2.0NW_004936669321,580 - 450,061 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EHMT1
(Sus scrofa - pig)
No map positions available.
EHMT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112380,041 - 545,333 (-)NCBI
ChlSab1.1 Ensembl12379,943 - 497,033 (-)Ensembl
Vero_WHO_p1.0NW_0236660584,899,940 - 5,005,236 (+)NCBI
Ehmt1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760271,397 - 463,462 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005408624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005408631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013506658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01066974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01066979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01221034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000011763   ⟹   ENSCLAP00000011626
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555135,547,313 - 5,641,499 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011764   ⟹   ENSCLAP00000011627
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555135,549,689 - 5,641,499 (+)Ensembl
RefSeq Acc Id: XM_005408624   ⟹   XP_005408681
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408625   ⟹   XP_005408682
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408626   ⟹   XP_005408683
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408627   ⟹   XP_005408684
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408628   ⟹   XP_005408685
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,491,446 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408629   ⟹   XP_005408686
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408630   ⟹   XP_005408687
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,642,559 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005408631   ⟹   XP_005408688
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,635,780 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013506658   ⟹   XP_013362112
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,539,120 - 5,612,289 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005408684   ⟸   XM_005408627
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005408685   ⟸   XM_005408628
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_005408688   ⟸   XM_005408631
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005408686   ⟸   XM_005408629
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005408687   ⟸   XM_005408630
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005408681   ⟸   XM_005408624
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005408683   ⟸   XM_005408626
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005408682   ⟸   XM_005408625
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362112   ⟸   XM_013506658
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSCLAP00000011627   ⟸   ENSCLAT00000011764
RefSeq Acc Id: ENSCLAP00000011626   ⟸   ENSCLAT00000011763


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008017 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000011626 ENTREZGENE
  ENSCLAP00000011627 ENTREZGENE
Ensembl Transcript ENSCLAT00000011763 ENTREZGENE
  ENSCLAT00000011764 ENTREZGENE
NCBI Gene Ehmt1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ehmt1  euchromatic histone lysine methyltransferase 1    euchromatic histone-lysine N-methyltransferase 1  Symbol and/or name change 5135510 APPROVED