Kdm2b (lysine demethylase 2B) - Rat Genome Database

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Gene: Kdm2b (lysine demethylase 2B) Chinchilla lanigera
Analyze
Symbol: Kdm2b
Name: lysine demethylase 2B
RGD ID: 9056474
Description: ENCODES a protein that exhibits histone H3K36 demethylase activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); unmethylated CpG binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); embryonic camera-type eye morphogenesis (ortholog); forebrain development (ortholog); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysine (K)-specific demethylase 2B; lysine-specific demethylase 2B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,774,059 - 6,887,171 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,774,021 - 6,885,113 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillaacute lymphoblastic leukemia  ISOKDM2B (Homo sapiens)9068941mRNA:increased expression:bone marrow (human)RGDPMID:21310926 and REF_RGD_ID:9588255
Kdm2bChinchillaneural tube defect  ISOKdm2b (Mus musculus)9068941 RGDPMID:21220025 and REF_RGD_ID:9588256
Kdm2bChinchillapancreatic ductal carcinoma severityISOKDM2B (Homo sapiens)9068941mRNA and protein:increased expression:pancreas (human)RGDPMID:23321669 and REF_RGD_ID:9588253
Kdm2bChinchillaT-cell non-Hodgkin lymphoma  ISOKdm2b (Rattus norvegicus)9068941DNA:insertions:promoter:multiple (rat)RGDPMID:18250326 and REF_RGD_ID:9588252
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillaDevelopmental Disabilities  ISOKDM2B (Homo sapiens)8554872ClinVar Annotator: match by term: Global developmental delayClinVarPMID:25741868
Kdm2bChinchillagenetic disease  ISOKDM2B (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:35904121 and PMID:36322151
Kdm2bChinchillaNeurodevelopmental Disorders  ISOKDM2B (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868 and PMID:36322151
Kdm2bChinchillasevere combined immunodeficiency  ISOKDM2B (Homo sapiens)8554872ClinVar Annotator: match by term: Severe combined immunodeficiency diseaseClinVarPMID:25741868
Kdm2bChinchillashort chain acyl-CoA dehydrogenase deficiency  ISOKDM2B (Homo sapiens)8554872ClinVar Annotator: match by term: Deficiency of butyryl-CoA dehydrogenaseClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillaschizophrenia  ISOKDM2B (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:21743468


Biological Process
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillachromatin remodeling involved_inISOKDM2B (Homo sapiens)9068941 PMID:16943429UniProtPMID:16943429
Kdm2bChinchillaembryonic camera-type eye morphogenesis involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillaforebrain development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillafourth ventricle development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillahindbrain development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillainitiation of neural tube closure involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillalateral ventricle development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillamidbrain development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillamidbrain-hindbrain boundary morphogenesis involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillanegative regulation of neural precursor cell proliferation involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillanegative regulation of neuron apoptotic process involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillanegative regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISOKdm2b (Mus musculus)9068941 PMID:21540074MGIPMID:21540074
Kdm2bChinchillanegative regulation of transcription by RNA polymerase II involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillapositive regulation of cell growth acts_upstream_of_or_withinISOKdm2b (Mus musculus)9068941 PMID:21540074MGIPMID:21540074
Kdm2bChinchillapositive regulation of stem cell population maintenance acts_upstream_of_or_withinISOKdm2b (Mus musculus)9068941 PMID:21540074MGIPMID:21540074
Kdm2bChinchillaspermatogenesis involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
Kdm2bChinchillathird ventricle development involved_inISOKdm2b (Mus musculus)9068941 PMID:21220025BHF-UCLPMID:21220025
1 to 17 of 17 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillanucleoplasm located_inISOKDM2B (Homo sapiens)9068941 HPAGO_REF:0000052
Kdm2bChinchillanucleus located_inISOKDM2B (Homo sapiens)9068941 PMID:26237645UniProtPMID:26237645
Kdm2bChinchillaPcG protein complex part_ofISOKDM2B (Homo sapiens)9068941 PMID:16943429UniProtPMID:16943429

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kdm2bChinchillaDNA modification pathway   ISOKDM2B (Homo sapiens)9068941 RGDPMID:23697932 and REF_RGD_ID:9479164
Kdm2bChinchillahistone modification pathway   ISOKDM2B (Homo sapiens)9068941 RGDPMID:23200123 and REF_RGD_ID:7242632

#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Kdm2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,774,059 - 6,887,171 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,774,021 - 6,885,113 (+)NCBIChiLan1.0ChiLan1.0
KDM2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812121,408,461 - 121,582,279 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12121,429,096 - 121,582,279 (-)EnsemblGRCh38hg38GRCh38
GRCh3712121,866,899 - 122,018,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612120,351,282 - 120,503,272 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412120,329,621 - 120,481,609NCBI
Celera12121,504,570 - 121,659,235 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12118,876,689 - 119,030,563 (-)NCBIHuRef
CHM1_112121,835,483 - 121,987,302 (-)NCBICHM1_1
T2T-CHM13v2.012121,399,894 - 121,575,445 (-)NCBIT2T-CHM13v2.0
Kdm2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,008,727 - 123,127,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,008,728 - 123,127,886 (-)EnsemblGRCm39 Ensembl
GRCm385122,870,664 - 122,989,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,870,665 - 122,989,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv375123,320,677 - 123,439,101 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365123,131,285 - 123,249,709 (-)NCBIMGSCv36mm8
Celera5119,957,271 - 120,084,228 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map562.63NCBI
Kdm2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81239,224,422 - 39,362,126 (+)NCBIGRCr8
mRatBN7.21233,566,530 - 33,701,366 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1233,574,657 - 33,701,355 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1234,753,500 - 34,880,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01235,364,864 - 35,491,838 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01234,416,500 - 34,543,259 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01239,021,924 - 39,161,954 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1239,078,119 - 39,161,956 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01240,918,049 - 41,054,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,672,334 - 34,802,802 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11234,528,594 - 34,666,191 (+)NCBI
Celera1235,254,131 - 35,380,144 (+)NCBICelera
Cytogenetic Map12q16NCBI
KDM2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210129,514,895 - 129,684,962 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112129,511,238 - 129,666,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012119,027,633 - 119,183,779 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112122,401,296 - 122,556,980 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12122,401,296 - 122,555,246 (-)Ensemblpanpan1.1panPan2
KDM2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,625,857 - 7,746,049 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,598,931 - 7,745,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,778,701 - 7,911,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0267,871,067 - 8,003,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,850,561 - 8,002,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,802,586 - 7,935,340 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,892,991 - 8,022,611 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,848,879 - 7,978,638 (+)NCBIUU_Cfam_GSD_1.0
Kdm2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118156,582,047 - 156,708,113 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,771,420 - 2,897,292 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,771,420 - 2,897,694 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,165,950 - 31,203,091 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11431,057,121 - 31,203,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,925,246 - 32,951,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,805,541 - 116,957,236 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11116,796,370 - 116,956,334 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037128,077,630 - 128,228,683 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdm2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474721,922,249 - 22,047,246 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





1 to 24 of 24 rows
RefSeq Transcripts XM_005403116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005403129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013503692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01057416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01057423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01117985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 24 of 24 rows

Ensembl Acc Id: ENSCLAT00000015586   ⟹   ENSCLAP00000015425
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554826,774,059 - 6,887,171 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000015587   ⟹   ENSCLAP00000015426
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554826,774,538 - 6,887,171 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000015588   ⟹   ENSCLAP00000015427
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554826,810,188 - 6,843,573 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000015589   ⟹   ENSCLAP00000015428
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554826,865,677 - 6,873,930 (+)Ensembl
RefSeq Acc Id: XM_005403116   ⟹   XP_005403173
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,021 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403117   ⟹   XP_005403174
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,022 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403118   ⟹   XP_005403175
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,021 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403119   ⟹   XP_005403176
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,058 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403120   ⟹   XP_005403177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,059 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403121   ⟹   XP_005403178
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,536 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403122   ⟹   XP_005403179
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,538 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403124   ⟹   XP_005403181
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,969 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403125   ⟹   XP_005403182
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,778,879 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403126   ⟹   XP_005403183
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,810,188 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403127   ⟹   XP_005403184
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,808,971 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403128   ⟹   XP_005403185
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,812,131 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005403129   ⟹   XP_005403186
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,811,396 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503691   ⟹   XP_013359145
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,774,432 - 6,885,113 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503692   ⟹   XP_013359146
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554826,808,610 - 6,885,113 (+)NCBI
Sequence:
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: XP_005403173   ⟸   XM_005403116
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005403174   ⟸   XM_005403117
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005403175   ⟸   XM_005403118
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005403176   ⟸   XM_005403119
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005403177   ⟸   XM_005403120
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VIV8 (UniProtKB/TrEMBL)
- Sequence:
CXXC-type   JmjC   PHD-type



1 to 40 of 44 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000010617 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015586 ENTREZGENE
  ENSCLAT00000015586.1 UniProtKB/TrEMBL
  ENSCLAT00000015587 ENTREZGENE
  ENSCLAT00000015587.1 UniProtKB/TrEMBL
  ENSCLAT00000015588.1 UniProtKB/TrEMBL
  ENSCLAT00000015589.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1360 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  Cupin UniProtKB/TrEMBL
InterPro Cupin_8 UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  JHD UniProtKB/TrEMBL
  JHDM1_Histone_Demethylase UniProtKB/TrEMBL
  JmjC_dom UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Znf_CXXC UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Kdm2b ENTREZGENE
PANTHER PHD/F-BOX CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Cupin_8 UniProtKB/TrEMBL
  F-box-like UniProtKB/TrEMBL
  JHD UniProtKB/TrEMBL
  JmjC UniProtKB/TrEMBL
  PHD_4 UniProtKB/TrEMBL
  zf-CXXC UniProtKB/TrEMBL
PROSITE JMJC UniProtKB/TrEMBL
  ZF_CXXC UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART JmjC UniProtKB/TrEMBL
  LRR_CC UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
  RNI-like UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Kdm2b  lysine demethylase 2B    lysine (K)-specific demethylase 2B  Symbol and/or name change 5135510 APPROVED