Kdm2b (lysine (K)-specific demethylase 2B) - Rat Genome Database

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Gene: Kdm2b (lysine (K)-specific demethylase 2B) Mus musculus
Analyze
Symbol: Kdm2b
Name: lysine (K)-specific demethylase 2B
RGD ID: 1320990
MGI Page MGI
Description: Exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including brain development; embryonic morphogenesis; and histone H3-K36 demethylation. Predicted to colocalize with PcG protein complex. Is expressed in embryo; female associated reproductive structure; metanephros; ovary; and ureteric tip. Orthologous to human KDM2B (lysine demethylase 2B).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: [Histone-H3]-lysine-36 demethylase 1B; Cxxc2; E430001G17; F-box and leucine-rich repeat protein 10; F-box protein containing leucine repeats 10; F-box protein FBL10; F-box/LRR-repeat protein 10; Fbl10; Fbxl1; Fbxl10; Jhdm1b; jmjC domain-containing histone demethylation protein 1B; KIAA3014; lysine-specific demethylase 2B; mKIAA3014; PCCX2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm12397  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,008,727 - 123,127,333 (-)NCBIGRCm39mm39
GRCm39 Ensembl5123,008,728 - 123,127,886 (-)Ensembl
GRCm385122,870,664 - 122,989,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,870,665 - 122,989,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv375123,320,677 - 123,439,101 (-)NCBIGRCm37mm9NCBIm37
MGSCv365123,131,285 - 123,249,709 (-)NCBImm8
Celera5119,957,271 - 120,084,228 (-)NCBICelera
Cytogenetic Map5FNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17296600   PMID:17967808   PMID:18022353   PMID:18276649   PMID:18287559   PMID:18799693   PMID:18836456   PMID:18838535   PMID:19202064   PMID:21245044   PMID:21267068  
PMID:21540074   PMID:21757686   PMID:21873635   PMID:22496869   PMID:22522173   PMID:22825849   PMID:23256043   PMID:23395003   PMID:23502314   PMID:24457600   PMID:24856970   PMID:25463925  
PMID:25848754   PMID:25872778   PMID:26711500   PMID:26808549   PMID:26984996   PMID:27103435   PMID:27252784   PMID:27626377   PMID:27646113   PMID:27705745   PMID:28319097   PMID:28705898  
PMID:29166607   PMID:31317506   PMID:31363749   PMID:31471323   PMID:32270414   PMID:32325033  


Genomics

Comparative Map Data
Kdm2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,008,727 - 123,127,333 (-)NCBIGRCm39mm39
GRCm39 Ensembl5123,008,728 - 123,127,886 (-)Ensembl
GRCm385122,870,664 - 122,989,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5122,870,665 - 122,989,823 (-)EnsemblGRCm38mm10GRCm38
MGSCv375123,320,677 - 123,439,101 (-)NCBIGRCm37mm9NCBIm37
MGSCv365123,131,285 - 123,249,709 (-)NCBImm8
Celera5119,957,271 - 120,084,228 (-)NCBICelera
Cytogenetic Map5FNCBI
KDM2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12121,429,096 - 121,581,023 (-)EnsemblGRCh38hg38GRCh38
GRCh3812121,402,288 - 121,582,268 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712121,866,899 - 122,018,928 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612120,351,282 - 120,503,272 (-)NCBINCBI36hg18NCBI36
Build 3412120,329,621 - 120,481,609NCBI
Celera12121,504,570 - 121,659,235 (-)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12118,876,689 - 119,030,563 (-)NCBIHuRef
CHM1_112121,835,483 - 121,987,302 (-)NCBICHM1_1
Kdm2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21233,566,530 - 33,701,366 (+)NCBI
Rnor_6.0 Ensembl1239,078,119 - 39,161,956 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01239,021,924 - 39,161,954 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01240,918,049 - 41,054,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41234,672,334 - 34,802,802 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11234,528,594 - 34,666,191 (+)NCBI
Celera1235,254,131 - 35,380,144 (+)NCBICelera
Cytogenetic Map12q16NCBI
Kdm2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,774,059 - 6,887,171 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554826,774,021 - 6,885,113 (+)NCBIChiLan1.0ChiLan1.0
KDM2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112122,401,296 - 122,556,980 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12122,401,296 - 122,555,246 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012119,027,633 - 119,183,779 (-)NCBIMhudiblu_PPA_v0panPan3
KDM2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1267,625,857 - 7,746,049 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl267,598,931 - 7,745,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha267,778,701 - 7,911,744 (+)NCBI
ROS_Cfam_1.0267,871,067 - 8,003,890 (+)NCBI
UMICH_Zoey_3.1267,802,586 - 7,935,340 (+)NCBI
UNSW_CanFamBas_1.0267,892,991 - 8,022,611 (+)NCBI
UU_Cfam_GSD_1.0267,848,879 - 7,978,638 (+)NCBI
Kdm2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118156,582,047 - 156,708,113 (-)NCBI
SpeTri2.0NW_0049365582,771,420 - 2,897,694 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDM2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1431,057,121 - 31,203,092 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11431,057,121 - 31,203,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,925,246 - 32,951,346 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KDM2B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111116,805,541 - 116,957,236 (-)NCBI
ChlSab1.1 Ensembl11116,796,370 - 116,956,334 (-)Ensembl
Kdm2b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474721,922,249 - 22,047,246 (-)NCBI

Position Markers
AW822016  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,908,541 - 122,908,672UniSTSGRCm38
MGSCv375123,358,550 - 123,358,681UniSTSGRCm37
Celera5119,996,739 - 119,996,870UniSTS
Cytogenetic Map5FUniSTS
Whitehead/MRC_RH51496.35UniSTS
UniSTS:235305  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385122,952,676 - 122,952,911UniSTSGRCm38
MGSCv375123,402,685 - 123,402,920UniSTSGRCm37
Celera5120,048,025 - 120,048,260UniSTS
Cytogenetic Map5FUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554342835126924008Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589271017124100176Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590173096124173175Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590413140124413285Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590413140124413285Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592682300126682419Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595085348129085464Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595286714129286920Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595317683129317856Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595317683129317856Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595317683129317856Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596172519130172667Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined596883692130883925Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined596883692130883925Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99801563126805880Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100527900134527900Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100527900134527900Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101194514135194514Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101725767135725963Mouse
14746986Manh58_mmandible shape 58 (mouse)5102308218136308218Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102806972136807131Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104435822138557193Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104567876138567876Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107829235141829348Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107829235141829348Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107829235141829348Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108614643126805880Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109090758139133150Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113172519138557193Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5113883692129555542Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119806972141714711Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5483
Count of miRNA genes:914
Interacting mature miRNAs:1307
Transcripts:ENSMUST00000031435, ENSMUST00000046073, ENSMUST00000086200, ENSMUST00000118027, ENSMUST00000121739, ENSMUST00000123479, ENSMUST00000127403, ENSMUST00000129998, ENSMUST00000132419, ENSMUST00000134501, ENSMUST00000138929, ENSMUST00000139674, ENSMUST00000143273, ENSMUST00000145082, ENSMUST00000147544, ENSMUST00000150543, ENSMUST00000152872, ENSMUST00000156474, ENSMUST00000172729, ENSMUST00000173312, ENSMUST00000173355, ENSMUST00000173670, ENSMUST00000174357
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF176524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB640824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU841175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY011726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031435   ⟹   ENSMUSP00000031435
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,870,668 - 122,900,355 (-)Ensembl
RefSeq Acc Id: ENSMUST00000046073   ⟹   ENSMUSP00000038229
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,870,665 - 122,989,099 (-)Ensembl
RefSeq Acc Id: ENSMUST00000086200   ⟹   ENSMUSP00000083376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,870,681 - 122,988,533 (-)Ensembl
RefSeq Acc Id: ENSMUST00000118027   ⟹   ENSMUSP00000114052
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,870,679 - 122,989,306 (-)Ensembl
RefSeq Acc Id: ENSMUST00000121739   ⟹   ENSMUSP00000114049
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,871,705 - 122,989,823 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,887,847 - 122,989,092 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127403   ⟹   ENSMUSP00000120912
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,871,291 - 122,989,794 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,883,428 - 122,922,107 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132419
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,880,635 - 122,882,233 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134501
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,940,615 - 122,989,099 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138929
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,934,836 - 122,953,117 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139674
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,875,482 - 122,881,085 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143273
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,932,658 - 122,947,994 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145082   ⟹   ENSMUSP00000114731
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,932,575 - 122,952,506 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147544
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,934,856 - 122,951,990 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150543
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,947,735 - 122,984,971 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152872   ⟹   ENSMUSP00000119746
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,880,508 - 122,888,580 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156474   ⟹   ENSMUSP00000118488
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,932,472 - 122,988,536 (-)Ensembl
RefSeq Acc Id: ENSMUST00000173355
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,882,216 - 122,917,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000174357
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5122,883,438 - 122,921,548 (-)Ensembl
RefSeq Acc Id: NM_001003953   ⟹   NP_001003953
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,731 - 123,127,162 (-)NCBI
GRCm385122,870,668 - 122,989,099 (-)NCBI
MGSCv375123,320,677 - 123,439,101 (-)RGD
Celera5119,957,271 - 120,084,235 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001378863   ⟹   NP_001365792
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,126,570 (-)NCBI
GRCm385122,870,664 - 122,988,507 (-)NCBI
RefSeq Acc Id: NM_001378864   ⟹   NP_001365793
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,038,430 (-)NCBI
GRCm385122,870,664 - 122,900,367 (-)NCBI
RefSeq Acc Id: NM_001378865   ⟹   NP_001365794
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,038,430 (-)NCBI
GRCm385122,870,664 - 122,900,367 (-)NCBI
RefSeq Acc Id: NM_013910   ⟹   NP_038938
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,731 - 123,038,413 (-)NCBI
GRCm385122,870,668 - 122,900,350 (-)NCBI
MGSCv375123,320,677 - 123,439,101 (-)RGD
Celera5119,957,271 - 120,084,235 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530376   ⟹   XP_006530439
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,127,333 (-)NCBI
GRCm385122,870,664 - 122,989,270 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248208   ⟹   XP_011246510
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,127,333 (-)NCBI
GRCm385122,870,664 - 122,989,270 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248209   ⟹   XP_011246511
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,126,600 (-)NCBI
GRCm385122,870,664 - 122,988,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248210   ⟹   XP_011246512
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,127,333 (-)NCBI
GRCm385122,870,664 - 122,989,270 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248211   ⟹   XP_011246513
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,127,210 (-)NCBI
GRCm385122,870,664 - 122,989,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248212   ⟹   XP_011246514
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,127,210 (-)NCBI
GRCm385122,870,664 - 122,989,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248213   ⟹   XP_011246515
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,089,900 (-)NCBI
GRCm385122,870,664 - 122,951,903 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248214   ⟹   XP_011246516
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,090,696 (-)NCBI
GRCm385122,870,664 - 122,952,633 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248215   ⟹   XP_011246517
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,122,984 (-)NCBI
GRCm385122,870,664 - 122,984,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011248216   ⟹   XP_011246518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,088,751 (-)NCBI
GRCm385122,870,664 - 122,950,892 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165165   ⟹   XP_036021058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,090,696 (-)NCBI
RefSeq Acc Id: XM_036165166   ⟹   XP_036021059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,075,707 (-)NCBI
RefSeq Acc Id: XM_036165167   ⟹   XP_036021060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395123,008,727 - 123,085,943 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001003953   ⟸   NM_001003953
- Peptide Label: isoform 1
- UniProtKB: Q6P1G2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_038938   ⟸   NM_013910
- Peptide Label: isoform 2
- UniProtKB: Q6P1G2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530439   ⟸   XM_006530376
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011246513   ⟸   XM_011248211
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011246511   ⟸   XM_011248209
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011246517   ⟸   XM_011248215
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_011246516   ⟸   XM_011248214
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246515   ⟸   XM_011248213
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011246514   ⟸   XM_011248212
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011246512   ⟸   XM_011248210
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011246510   ⟸   XM_011248208
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011246518   ⟸   XM_011248216
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: NP_001365792   ⟸   NM_001378863
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001365794   ⟸   NM_001378865
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001365793   ⟸   NM_001378864
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000114731   ⟸   ENSMUST00000145082
RefSeq Acc Id: ENSMUSP00000083376   ⟸   ENSMUST00000086200
RefSeq Acc Id: ENSMUSP00000038229   ⟸   ENSMUST00000046073
RefSeq Acc Id: ENSMUSP00000114052   ⟸   ENSMUST00000118027
RefSeq Acc Id: ENSMUSP00000031435   ⟸   ENSMUST00000031435
RefSeq Acc Id: ENSMUSP00000119746   ⟸   ENSMUST00000152872
RefSeq Acc Id: ENSMUSP00000120912   ⟸   ENSMUST00000127403
RefSeq Acc Id: ENSMUSP00000118488   ⟸   ENSMUST00000156474
RefSeq Acc Id: ENSMUSP00000114049   ⟸   ENSMUST00000121739
RefSeq Acc Id: XP_036021058   ⟸   XM_036165165
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036021060   ⟸   XM_036165167
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036021059   ⟸   XM_036165166
- Peptide Label: isoform X9
Protein Domains
CXXC-type   F-box   JmjC   PHD-type

Promoters
RGD ID:6887998
Promoter ID:EPDNEW_M7450
Type:initiation region
Name:Kdm2b_1
Description:Mus musculus lysine -specific demethylase 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7451  EPDNEW_M7452  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,900,347 - 122,900,407EPDNEW
RGD ID:6888000
Promoter ID:EPDNEW_M7451
Type:multiple initiation site
Name:Kdm2b_3
Description:Mus musculus lysine -specific demethylase 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7450  EPDNEW_M7452  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,988,503 - 122,988,563EPDNEW
RGD ID:6888002
Promoter ID:EPDNEW_M7452
Type:initiation region
Name:Kdm2b_2
Description:Mus musculus lysine -specific demethylase 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7450  EPDNEW_M7451  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385122,989,095 - 122,989,155EPDNEW
RGD ID:6837511
Promoter ID:MM_KWN:43981
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000066437
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,330,726 - 123,331,592 (-)MPROMDB
RGD ID:6837516
Promoter ID:MM_KWN:43982
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   Kidney,   Spleen
Transcripts:OTTMUST00000066444
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,332,384 - 123,332,884 (-)MPROMDB
RGD ID:6837500
Promoter ID:MM_KWN:43984
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000066436
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,350,104 - 123,350,604 (-)MPROMDB
RGD ID:6837512
Promoter ID:MM_KWN:43987
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000066440,   OTTMUST00000066441
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,402,011 - 123,402,511 (-)MPROMDB
RGD ID:6837503
Promoter ID:MM_KWN:43990
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   MEF_B6,   Spleen
Transcripts:ENSMUST00000118027,   ENSMUST00000121739,   NM_001005866,   OTTMUST00000066159,   OTTMUST00000066431,   OTTMUST00000066432,   OTTMUST00000066433,   OTTMUST00000066434
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365123,438,536 - 123,440,692 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1354737 AgrOrtholog
Ensembl Genes ENSMUSG00000029475 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031435 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000038229 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000083376 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114049 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114052 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000114731 UniProtKB/TrEMBL
  ENSMUSP00000118488 UniProtKB/TrEMBL
  ENSMUSP00000119746 UniProtKB/TrEMBL
  ENSMUSP00000120912 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031435 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000046073 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000086200 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000118027 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000121739 UniProtKB/TrEMBL
  ENSMUST00000127403 UniProtKB/TrEMBL
  ENSMUST00000145082 UniProtKB/TrEMBL
  ENSMUST00000152872 UniProtKB/TrEMBL
  ENSMUST00000156474 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cupin_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JmjC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CXXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:30841 UniProtKB/Swiss-Prot
MGD MGI:1354737 ENTREZGENE
NCBI Gene 30841 ENTREZGENE
Pfam Cupin_8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-CXXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kdm2b PhenoGen
PROSITE JMJC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_CXXC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART JmjC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YUE3_MOUSE UniProtKB/TrEMBL
  D3YV31_MOUSE UniProtKB/TrEMBL
  D3YVU4_MOUSE UniProtKB/TrEMBL
  D3YVU7_MOUSE UniProtKB/TrEMBL
  D6RHM8_MOUSE UniProtKB/TrEMBL
  E9QL25_MOUSE UniProtKB/TrEMBL
  F6QTG9_MOUSE UniProtKB/TrEMBL
  KDM2B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3V396 UniProtKB/Swiss-Prot
  Q6PFD0 UniProtKB/Swiss-Prot
  Q6ZPE8 UniProtKB/Swiss-Prot
  Q9CSF7 UniProtKB/Swiss-Prot
  Q9QZN6 UniProtKB/Swiss-Prot