Smarce1 (SWI/SNF related BAF chromatin remodeling complex subunit E1) - Rat Genome Database

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Gene: Smarce1 (SWI/SNF related BAF chromatin remodeling complex subunit E1) Chinchilla lanigera
Analyze
Symbol: Smarce1
Name: SWI/SNF related BAF chromatin remodeling complex subunit E1 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1)
RGD ID: 8699819
Description: ENCODES a protein that exhibits N-acetyltransferase activity (ortholog); nuclear receptor binding (ortholog); RNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); neurogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 5 (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,129,132 - 15,147,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,129,619 - 15,147,487 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Smarce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,129,132 - 15,147,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,129,619 - 15,147,487 (-)NCBIChiLan1.0ChiLan1.0
SMARCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,624,962 - 40,647,818 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,624,962 - 40,648,654 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,781,214 - 38,804,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,037,498 - 36,057,629 (-)NCBINCBI36Build 36hg18NCBI36
Build 341736,037,505 - 36,057,629NCBI
Celera1735,445,555 - 35,465,686 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,578,544 - 34,598,673 (-)NCBIHuRef
CHM1_11739,019,316 - 39,039,446 (-)NCBICHM1_1
T2T-CHM13v2.01741,489,340 - 41,512,196 (-)NCBIT2T-CHM13v2.0
Smarce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,099,873 - 99,121,843 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,099,873 - 99,121,843 (-)EnsemblGRCm39 Ensembl
GRCm381199,209,047 - 99,231,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,209,047 - 99,231,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,070,361 - 99,092,331 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,025,137 - 99,047,107 (-)NCBIMGSCv36mm8
Celera11108,876,605 - 108,898,195 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
Smarce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,655,468 - 84,678,259 (-)NCBIGRCr8
mRatBN7.21084,159,270 - 84,180,547 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,159,275 - 84,179,989 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1089,103,140 - 89,123,847 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,601,260 - 88,621,968 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,993,326 - 84,013,905 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01087,116,827 - 87,138,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,116,827 - 87,137,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,912,863 - 86,934,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41088,104,643 - 88,127,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11927,930,282 - 27,931,646 (-)NCBI
Celera1082,899,032 - 82,919,746 (-)NCBICelera
Cytogenetic Map10q31NCBI
SMARCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,301,208 - 24,322,471 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,192,677 - 26,217,200 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,633,982 - 16,660,502 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,860,098 - 16,884,946 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,860,400 - 16,884,946 (+)Ensemblpanpan1.1panPan2
SMARCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,015,402 - 22,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,015,600 - 22,035,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,488,381 - 21,509,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,808,541 - 22,829,536 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,808,728 - 22,829,536 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,582,974 - 21,603,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,841,783 - 21,862,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0921,966,284 - 21,987,292 (+)NCBIUU_Cfam_GSD_1.0
Smarce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,415,651 - 21,435,591 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,638,526 - 15,659,706 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,638,546 - 15,659,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,786,897 - 21,807,162 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,784,410 - 21,807,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,164,830 - 22,178,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,539,138 - 65,559,810 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,541,513 - 65,561,401 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,419,335 - 36,441,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarce1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,714,525 - 2,729,961 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,712,524 - 2,730,028 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000022521   ⟹   ENSCLAP00000022316
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545115,129,132 - 15,147,488 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000022522   ⟹   ENSCLAP00000022317
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545115,130,675 - 15,147,262 (-)Ensembl
RefSeq Acc Id: XM_005394363   ⟹   XP_005394420
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545115,129,619 - 15,147,487 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394420 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022316
  ENSCLAP00000022316.1
  ENSCLAP00000022317.1
RefSeq Acc Id: XP_005394420   ⟸   XM_005394363
- UniProtKB: A0A8C2W5N4 (UniProtKB/TrEMBL),   A0A8C2W079 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022317   ⟸   ENSCLAT00000022522
Ensembl Acc Id: ENSCLAP00000022316   ⟸   ENSCLAT00000022521
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015303 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022521 ENTREZGENE
  ENSCLAT00000022521.1 UniProtKB/TrEMBL
  ENSCLAT00000022522.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
NCBI Gene Smarce1 ENTREZGENE
PANTHER PTHR46232 UniProtKB/TrEMBL
  SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY E MEMBER 1 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A8C2W079 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W5N4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-09-25 Smarce1  SWI/SNF related BAF chromatin remodeling complex subunit E1  Smarce1  SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1  Symbol and/or name change 5135510 APPROVED