Rad51d (RAD51 paralog D) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rad51d (RAD51 paralog D) Chinchilla lanigera
Analyze
Symbol: Rad51d
Name: RAD51 paralog D
RGD ID: 9033835
Description: ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA damage sensor activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); DNA damage response (ortholog); DNA strand invasion (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN centrosome (ortholog); chromosome, telomeric region (ortholog); Rad51B-Rad51C-Rad51D-XRCC2 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA repair protein RAD51 homolog 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554819,795,102 - 9,810,426 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554819,795,102 - 9,810,426 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rad51d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554819,795,102 - 9,810,426 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554819,795,102 - 9,810,426 (-)NCBIChiLan1.0ChiLan1.0
RAD51D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,092,221 - 35,119,860 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,092,221 - 35,121,522 (-)EnsemblGRCh38hg38GRCh38
GRCh371733,419,240 - 33,446,879 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361730,451,514 - 30,471,001 (-)NCBINCBI36Build 36hg18NCBI36
Build 341730,451,514 - 30,471,001NCBI
Celera1730,337,000 - 30,357,081 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1729,611,480 - 29,631,575 (-)NCBIHuRef
CHM1_11733,491,188 - 33,511,250 (-)NCBICHM1_1
T2T-CHM13v2.01736,040,135 - 36,067,774 (-)NCBIT2T-CHM13v2.0
Rad51d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391182,762,786 - 82,781,571 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1182,767,260 - 82,781,440 (-)EnsemblGRCm39 Ensembl
GRCm381182,871,960 - 82,890,624 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1182,876,434 - 82,890,614 (-)EnsemblGRCm38mm10GRCm38
MGSCv371182,686,566 - 82,704,117 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,690,909 - 82,706,784 (-)NCBIMGSCv36mm8
Celera1192,492,600 - 92,509,713 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.3NCBI
Rad51d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81068,303,350 - 68,322,002 (-)NCBIGRCr8
mRatBN7.21067,805,720 - 67,824,452 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1067,740,712 - 67,824,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1072,430,311 - 72,444,394 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01071,935,690 - 71,949,775 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01067,399,822 - 67,413,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01070,222,703 - 70,241,352 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1070,227,163 - 70,241,254 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01069,858,316 - 69,872,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41071,092,798 - 71,107,418 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11071,107,335 - 71,121,097 (-)NCBI
Celera1066,754,682 - 66,768,601 (-)NCBICelera
Cytogenetic Map10q26NCBI
RAD51D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21929,346,306 - 29,367,780 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11731,227,287 - 31,254,827 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01721,666,236 - 21,693,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,958,212 - 21,978,406 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,958,212 - 21,978,406 (+)Ensemblpanpan1.1panPan2
RAD51D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1938,242,178 - 38,259,788 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl938,222,051 - 38,365,621 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha937,466,391 - 37,483,936 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0939,054,355 - 39,071,978 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl939,054,329 - 39,156,002 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1937,837,927 - 37,855,463 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0938,123,438 - 38,140,985 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0938,210,969 - 38,228,575 (+)NCBIUU_Cfam_GSD_1.0
Rad51d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560237,241,407 - 37,254,875 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936538119,326 - 134,758 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936538119,409 - 132,830 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFFL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1240,054,181 - 40,072,822 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11240,054,175 - 40,072,831 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,565,334 - 41,579,484 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD51D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11628,603,326 - 28,623,120 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1628,604,500 - 28,622,845 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660751,364,360 - 1,384,089 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad51d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248752,972,678 - 2,987,344 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248752,972,739 - 2,987,360 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007182   ⟹   ENSCLAP00000007070
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554819,795,102 - 9,810,426 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000007183   ⟹   ENSCLAP00000007071
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554819,795,102 - 9,810,426 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000007184   ⟹   ENSCLAP00000007072
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554819,796,167 - 9,810,315 (-)Ensembl
RefSeq Acc Id: XM_005402864   ⟹   XP_005402921
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554819,795,102 - 9,810,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005402867   ⟹   XP_005402924
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554819,795,102 - 9,810,426 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013503403   ⟹   XP_013358857
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554819,795,102 - 9,810,426 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005402921 (Get FASTA)   NCBI Sequence Viewer  
  XP_005402924 (Get FASTA)   NCBI Sequence Viewer  
  XP_013358857 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007070
  ENSCLAP00000007070.1
  ENSCLAP00000007071
  ENSCLAP00000007071.1
  ENSCLAP00000007072.1
Reference Protein Sequences
RefSeq Acc Id: XP_005402924   ⟸   XM_005402867
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UY10 (UniProtKB/TrEMBL),   A0A8C2V0R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005402921   ⟸   XM_005402864
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V3I1 (UniProtKB/TrEMBL),   A0A8C2V0R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013358857   ⟸   XM_013503403
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V0R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007072   ⟸   ENSCLAT00000007184
RefSeq Acc Id: ENSCLAP00000007071   ⟸   ENSCLAT00000007183
RefSeq Acc Id: ENSCLAP00000007070   ⟸   ENSCLAT00000007182
Protein Domains
RecA family profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004975 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007182 ENTREZGENE
  ENSCLAT00000007182.1 UniProtKB/TrEMBL
  ENSCLAT00000007183 ENTREZGENE
  ENSCLAT00000007183.1 UniProtKB/TrEMBL
  ENSCLAT00000007184.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  DNA_recomb/repair_Rad51_C UniProtKB/TrEMBL
  DNA_recomb/repair_RecA-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Rad51D_C UniProtKB/TrEMBL
  RAD51D_N UniProtKB/TrEMBL
  RecA_ATP-bd UniProtKB/TrEMBL
NCBI Gene Rad51d ENTREZGENE
PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG 4 UniProtKB/TrEMBL
  DNA REPAIR PROTEIN RAD51 HOMOLOG 4 UniProtKB/TrEMBL
Pfam Rad51 UniProtKB/TrEMBL
  RAD51D_N UniProtKB/TrEMBL
PIRSF Rad51 UniProtKB/TrEMBL
PROSITE RECA_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2UY10 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V0R0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V3I1 ENTREZGENE, UniProtKB/TrEMBL