Smarca2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) - Rat Genome Database

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Gene: Smarca2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) Chinchilla lanigera
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Symbol: Smarca2
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
RGD ID: 8784359
Description: ENCODES a protein that exhibits chromatin binding (ortholog); transcription cis-regulatory region binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN aortic smooth muscle cell differentiation (ortholog); cell population proliferation (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Arnold-Chiari Malformation (ortholog); blepharophimosis (ortholog); FOUND IN chromatin (ortholog); intermediate filament cytoskeleton (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable global transcription activator SNF2L2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554346,420,854 - 6,594,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554346,420,850 - 6,592,797 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Smarca2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554346,420,854 - 6,594,425 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554346,420,850 - 6,592,797 (+)NCBIChiLan1.0ChiLan1.0
SMARCA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3892,015,347 - 2,193,624 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl91,980,290 - 2,193,624 (+)EnsemblGRCh38hg38GRCh38
GRCh3792,015,347 - 2,193,624 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3692,005,342 - 2,183,624 (+)NCBINCBI36hg18NCBI36
Build 3492,005,341 - 2,183,624NCBI
Celera91,933,296 - 2,111,552 (+)NCBI
Cytogenetic Map9p24.3NCBI
HuRef91,969,240 - 2,147,484 (+)NCBIHuRef
CHM1_192,015,467 - 2,193,714 (+)NCBICHM1_1
T2T-CHM13v2.092,017,871 - 2,196,087 (+)NCBI
Smarca2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391926,580,804 - 26,755,721 (+)NCBIGRCm39mm39
GRCm39 Ensembl1926,582,450 - 26,755,722 (+)Ensembl
GRCm381926,605,073 - 26,778,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1926,605,050 - 26,778,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv371926,679,650 - 26,852,811 (+)NCBIGRCm37mm9NCBIm37
MGSCv361926,672,257 - 26,845,418 (+)NCBImm8
Celera1927,388,592 - 27,561,569 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1921.17NCBI
Smarca2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21224,191,125 - 224,358,640 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1224,191,125 - 224,358,684 (+)Ensembl
Rnor_6.01244,615,811 - 244,783,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1244,615,821 - 244,782,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,867,320 - 252,035,241 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,015,057 - 230,183,451 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11230,179,079 - 230,347,474 (+)NCBI
Celera1221,383,226 - 221,550,796 (+)NCBICelera
Cytogenetic Map1q52NCBI
SMARCA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.192,043,336 - 2,189,409 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl92,013,237 - 2,189,409 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v091,818,004 - 1,997,652 (+)NCBIMhudiblu_PPA_v0panPan3
SMARCA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1190,709,221 - 90,884,295 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl190,712,520 - 90,883,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha191,177,680 - 91,352,646 (+)NCBI
ROS_Cfam_1.0191,256,337 - 91,431,025 (+)NCBI
ROS_Cfam_1.0 Ensembl191,270,959 - 91,431,021 (+)Ensembl
UMICH_Zoey_3.1190,903,604 - 91,078,531 (+)NCBI
UNSW_CanFamBas_1.0190,622,040 - 90,796,824 (+)NCBI
UU_Cfam_GSD_1.0191,390,477 - 91,565,374 (+)NCBI
Smarca2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947138,171,713 - 138,337,488 (+)NCBI
SpeTri2.0NW_0049365032,835,512 - 3,001,365 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1219,573,535 - 219,815,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11219,624,773 - 219,815,438 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21245,489,523 - 245,677,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11277,364,468 - 77,546,356 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1277,375,500 - 77,546,314 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603865,710,587 - 65,892,953 (-)NCBIVero_WHO_p1.0
Smarca2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247366,695,658 - 6,865,809 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247366,681,491 - 6,863,403 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000021340   ⟹   ENSCLAP00000021139
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,420,854 - 6,594,425 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021341   ⟹   ENSCLAP00000021140
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,434,889 - 6,594,425 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021342   ⟹   ENSCLAP00000021141
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,434,925 - 6,591,400 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021343   ⟹   ENSCLAP00000021142
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,434,925 - 6,591,149 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021344   ⟹   ENSCLAP00000021143
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,561,674 - 6,594,425 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021345   ⟹   ENSCLAP00000021144
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,562,211 - 6,591,950 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021346   ⟹   ENSCLAP00000021145
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,562,211 - 6,565,100 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021347   ⟹   ENSCLAP00000021146
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,563,808 - 6,591,950 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000021348   ⟹   ENSCLAP00000021147
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554346,564,042 - 6,594,425 (+)Ensembl
RefSeq Acc Id: XM_005388600   ⟹   XP_005388657
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,420,853 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388601   ⟹   XP_005388658
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,423,088 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388602   ⟹   XP_005388659
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,422,686 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388603   ⟹   XP_005388660
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,422,932 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388604   ⟹   XP_005388661
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,420,982 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388605   ⟹   XP_005388662
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,420,854 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388606   ⟹   XP_005388663
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,438,286 - 6,592,797 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388607   ⟹   XP_005388664
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,420,850 - 6,529,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516311   ⟹   XP_013371765
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554346,561,674 - 6,592,797 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005388664   ⟸   XM_005388607
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005388657   ⟸   XM_005388600
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388662   ⟸   XM_005388605
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005388661   ⟸   XM_005388604
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388659   ⟸   XM_005388602
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388660   ⟸   XM_005388603
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388658   ⟸   XM_005388601
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005388663   ⟸   XM_005388606
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371765   ⟸   XM_013516311
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000021146   ⟸   ENSCLAT00000021347
RefSeq Acc Id: ENSCLAP00000021145   ⟸   ENSCLAT00000021346
RefSeq Acc Id: ENSCLAP00000021147   ⟸   ENSCLAT00000021348
RefSeq Acc Id: ENSCLAP00000021140   ⟸   ENSCLAT00000021341
RefSeq Acc Id: ENSCLAP00000021139   ⟸   ENSCLAT00000021340
RefSeq Acc Id: ENSCLAP00000021142   ⟸   ENSCLAT00000021343
RefSeq Acc Id: ENSCLAP00000021141   ⟸   ENSCLAT00000021342
RefSeq Acc Id: ENSCLAP00000021144   ⟸   ENSCLAT00000021345
RefSeq Acc Id: ENSCLAP00000021143   ⟸   ENSCLAT00000021344
Protein Domains
Bromo   Helicase ATP-binding   Helicase C-terminal   HSA   QLQ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014484 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000021139 ENTREZGENE
  ENSCLAP00000021139.1 UniProtKB/TrEMBL
  ENSCLAP00000021140.1 UniProtKB/TrEMBL
  ENSCLAP00000021141 ENTREZGENE
  ENSCLAP00000021141.1 UniProtKB/TrEMBL
  ENSCLAP00000021142.1 UniProtKB/TrEMBL
  ENSCLAP00000021143 ENTREZGENE
  ENSCLAP00000021143.1 UniProtKB/TrEMBL
  ENSCLAP00000021144.1 UniProtKB/TrEMBL
  ENSCLAP00000021145.1 UniProtKB/TrEMBL
  ENSCLAP00000021146.1 UniProtKB/TrEMBL
  ENSCLAP00000021147.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021340 ENTREZGENE
  ENSCLAT00000021340.1 UniProtKB/TrEMBL
  ENSCLAT00000021341.1 UniProtKB/TrEMBL
  ENSCLAT00000021342 ENTREZGENE
  ENSCLAT00000021342.1 UniProtKB/TrEMBL
  ENSCLAT00000021343.1 UniProtKB/TrEMBL
  ENSCLAT00000021344 ENTREZGENE
  ENSCLAT00000021344.1 UniProtKB/TrEMBL
  ENSCLAT00000021345.1 UniProtKB/TrEMBL
  ENSCLAT00000021346.1 UniProtKB/TrEMBL
  ENSCLAT00000021347.1 UniProtKB/TrEMBL
  ENSCLAT00000021348.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.40.5.120 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro BRK_domain UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  Gln-Leu-Gln_QLQ UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMARCA2 UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
NCBI Gene Smarca2 ENTREZGENE
PANTHER PTHR10799:SF541 UniProtKB/TrEMBL
Pfam BRK UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2-rel_dom UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
SMART BRK UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
Superfamily-SCOP SSF160481 UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VV71_CHILA UniProtKB/TrEMBL
  A0A8C2VV75_CHILA UniProtKB/TrEMBL
  A0A8C2VVC8_CHILA UniProtKB/TrEMBL
  A0A8C2VXF4_CHILA UniProtKB/TrEMBL
  A0A8C2VXY6_CHILA UniProtKB/TrEMBL
  A0A8C2VZP4_CHILA UniProtKB/TrEMBL
  A0A8C2W0C1_CHILA UniProtKB/TrEMBL
  A0A8C2W2A9_CHILA UniProtKB/TrEMBL
  A0A8C2W2V4_CHILA UniProtKB/TrEMBL