Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair pathway
go back to main search page
Accession:PW:0000099 term browser browse the term
Definition:The pathways involved in the repair of damaged DNA. The damage can involve mismatched or damaged bases, distortion of the helix or breaks in the DNA double strand. Repair of DNA lesions along with the upstream lesion detection and signaling its presence are collectively known as the DNA damage response.


show annotations for term's descendants       view all columns           Sort by:
 
altered DNA modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:9588971
altered mismatch repair pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:2306714
RGD:4143515
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:2306714
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:2306714
G Pms1 PMS1 homolog 1, mismatch repair system component JBrowse link 9 53,120,656 53,206,520 RGD:2306714
G Pms2 PMS1 homolog 2, mismatch repair system component JBrowse link 12 12,714,394 12,738,654 RGD:2306714
altered nucleotide excision repair pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:7246919
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:7246919
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 18 25,037,668 25,068,380 RGD:7246919
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 10 2,010,140 2,037,953 RGD:7246919
RGD:9588971
G Ercc5 ERCC excision repair 5, endonuclease JBrowse link 9 50,928,847 50,970,962 RGD:7246919
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:7246919
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit JBrowse link 2 39,434,617 39,473,392 RGD:7246919
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:7246919
G Xpc XPC complex subunit, DNA damage recognition and repair factor JBrowse link 4 123,134,457 123,161,985 RGD:7246919
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:8694154
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:8694154
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:8694154
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:8694154
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:8694154
base excision repair pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 27,849,943 27,852,083 RGD:1358139
RGD:6907045
RGD:1578408
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 JBrowse link X 23,146,085 23,166,676 RGD:6907045
G Fen1 flap structure-specific endonuclease 1 JBrowse link 1 226,251,516 226,256,160 RGD:6907045
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 JBrowse link 19 59,984,234 59,985,494 RGD:6907045
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:6907045
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:1358139
RGD:6907045
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:6907045
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:6907045
G Mpg N-methylpurine-DNA glycosylase JBrowse link 10 15,661,768 15,667,995 RGD:1358139
RGD:6907045
G Mutyh mutY DNA glycosylase JBrowse link 5 135,663,328 135,675,348 RGD:6907045
G Neil1 nei-like DNA glycosylase 1 JBrowse link 8 61,817,258 61,824,023 RGD:6907045
G Neil2 nei-like DNA glycosylase 2 JBrowse link 15 46,371,780 46,382,730 RGD:6907045
G Neil3 nei-like DNA glycosylase 3 JBrowse link 16 41,079,444 41,138,505 RGD:6907045
G Nthl1 nth-like DNA glycosylase 1 JBrowse link 10 13,996,660 14,002,827 RGD:6907045
G Ogg1 8-oxoguanine DNA glycosylase JBrowse link 4 145,282,828 145,289,367 RGD:1578408
RGD:6907045
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:6907045
G Parp2 poly (ADP-ribose) polymerase 2 JBrowse link 15 27,739,416 27,749,650 RGD:6907045
G Parp3 poly (ADP-ribose) polymerase family, member 3 JBrowse link 8 115,173,440 115,179,543 RGD:6907045
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:6907045
G Polb DNA polymerase beta JBrowse link 16 74,237,001 74,260,272 RGD:6907045
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:6907045
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:6907045
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:6907045
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:6907045
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:6907045
G Pole2 DNA polymerase epsilon 2, accessory subunit JBrowse link 6 91,494,348 91,532,355 RGD:6907045
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:6907045
G Pole4 DNA polymerase epsilon 4, accessory subunit JBrowse link 4 113,491,644 113,497,455 RGD:6907045
G Poll DNA polymerase lambda JBrowse link 1 265,290,337 265,298,847 RGD:6907045
G RGD1563668 similar to High mobility group protein 1 (HMG-1) JBrowse link 10 40,994,237 40,994,990 RGD:6907045
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 JBrowse link 7 144,774,155 144,788,333 RGD:6907045
G Tdg thymine-DNA glycosylase JBrowse link 7 27,194,000 27,213,676 RGD:6907045
G Ung uracil-DNA glycosylase JBrowse link 12 48,246,593 48,255,547 RGD:6907045
G Xrcc1 X-ray repair cross complementing 1 JBrowse link 1 81,412,635 81,441,680 RGD:1578408
RGD:6907045
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:9585661
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:9585661
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:9585661
G Gatad2a GATA zinc finger domain containing 2A JBrowse link 16 21,177,793 21,267,768 RGD:9585661
G Gatad2b GATA zinc finger domain containing 2B JBrowse link 2 189,654,871 189,735,056 RGD:9585661
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9585661
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:9585661
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:9585661
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:9585661
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:9585661
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:9585661
G Mta3 metastasis associated 1 family, member 3 JBrowse link 6 6,904,449 7,036,929 RGD:9585661
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9585661
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9585661
DNA modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxxc1 CXXC finger protein 1 JBrowse link 18 70,192,520 70,197,871 RGD:9479164
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:8695943
RGD:8695944
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link 6 28,205,375 28,346,052 RGD:8695943
RGD:8695944
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:8695943
RGD:8695944
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:9479164
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:9479164
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:9479164
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:9479164
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:8695954
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:8695954
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:8695954
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:8695954
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:8695944
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:8695944
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:8695944
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:8695944
G Spi1 Spi-1 proto-oncogene JBrowse link 3 79,918,127 79,937,708 RGD:8695944
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:8695943
RGD:8695944
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:8695943
RGD:8695944
G Tet3 tet methylcytosine dioxygenase 3 JBrowse link 4 115,060,702 115,160,800 RGD:8695943
RGD:9479164
RGD:8695944
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:8695954
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 JBrowse link 1 248,228,496 248,291,984 RGD:8695954
G Zbtb33 zinc finger and BTB domain containing 33 JBrowse link X 124,319,299 124,326,506 RGD:8695954
G Zbtb38 zinc finger and BTB domain containing 38 JBrowse link 8 104,566,999 104,694,890 RGD:8695954
G Zbtb4 zinc finger and BTB domain containing 4 JBrowse link 10 56,367,586 56,388,296 RGD:8695954
G Zfp57 zinc finger protein 57 JBrowse link 20 2,014,177 2,020,488 RGD:8695954
histone modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aebp2 AE binding protein 2 JBrowse link 4 174,799,378 174,863,260 RGD:9479059
G Aplf aprataxin and PNKP like factor JBrowse link 4 119,514,822 119,568,764 RGD:9068945
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:9068945
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:9068945
G Ash1l ASH1 like histone lysine methyltransferase JBrowse link 2 188,252,592 188,389,251 RGD:7242632
G Ash2l ASH2 like histone lysine methyltransferase complex subunit JBrowse link 16 71,011,315 71,033,171 RGD:9479053
G Bap1 Brca1 associated protein 1 JBrowse link 16 7,336,685 7,345,511 RGD:9479061
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:9479074
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:9479058
RGD:9479060
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:9479075
RGD:9479074
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 JBrowse link 9 9,863,380 9,865,920 RGD:9479061
G Brd1 bromodomain containing 1 JBrowse link 7 129,676,119 129,724,303 RGD:9479075
G Brd2 bromodomain containing 2 JBrowse link 20 3,910,555 3,921,074 RGD:9479075
G Brd3 bromodomain containing 3 JBrowse link 3 5,995,204 6,054,467 RGD:9479075
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:9479075
G Brd7 bromodomain containing 7 JBrowse link 19 19,672,780 19,701,484 RGD:9479075
G Brdt bromodomain testis associated JBrowse link 14 3,437,876 3,462,613 RGD:9479075
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:9479074
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:9479047
G Cbx2 chromobox 2 JBrowse link 10 108,132,105 108,140,935 RGD:9479058
RGD:9479060
G Cbx4 chromobox 4 JBrowse link 10 108,190,947 108,196,455 RGD:9479058
RGD:9479060
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:9479074
G Cbx6 chromobox 6 JBrowse link 7 121,047,996 121,058,109 RGD:9479058
RGD:9479060
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9479058
RGD:9479060
G Cbx8 chromobox 8 JBrowse link 10 108,148,073 108,150,511 RGD:9479058
RGD:9479060
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:9068945
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:9068945
G Chd1 chromodomain helicase DNA binding protein 1 JBrowse link 1 57,692,828 57,756,762 RGD:9479074
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:9104959
RGD:9479075
G Cxxc1 CXXC finger protein 1 JBrowse link 18 70,192,520 70,197,871 RGD:9479053
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9068945
G Dot1l DOT1 like histone lysine methyltransferase JBrowse link 7 11,786,105 11,824,742 RGD:7242632
G Dpf3 double PHD fingers 3 JBrowse link 6 106,660,569 106,971,310 RGD:9479074
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit JBrowse link 6 22,296,128 22,316,894 RGD:9479053
G Eed embryonic ectoderm development JBrowse link 1 154,189,252 154,216,340 RGD:9479058
RGD:9479059
G Ehmt1 euchromatic histone lysine methyltransferase 1 JBrowse link 3 1,966,974 2,123,858 RGD:7242632
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:7242632
RGD:9479074
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:9104959
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link 10 89,104,026 89,139,978 RGD:9479058
RGD:9479059
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:7242632
RGD:9479059
RGD:9479058
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:9075965
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:9074213
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:9075965
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:9075965
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:9104959
G Hcfc1 host cell factor C1 JBrowse link X 156,812,012 156,837,227 RGD:9479053
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9104959
G Hdac10 histone deacetylase 10 JBrowse link 7 130,102,335 130,109,036 RGD:9104959
G Hdac11 histone deacetylase 11 JBrowse link 4 122,781,095 122,798,355 RGD:9104959
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:9104959
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:9104959
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:9104959
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:9104959
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:9104959
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:9104959
G Hdac9 histone deacetylase 9 JBrowse link 6 53,487,367 54,358,694 RGD:9104959
G Hira histone cell cycle regulator JBrowse link 11 86,168,196 86,276,430 RGD:9068945
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:9068945
G Ing2 inhibitor of growth family, member 2 JBrowse link 16 47,714,756 47,725,836 RGD:9479074
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link 17 20,183,440 20,365,219 RGD:9479058
RGD:9479059
G Jmjd1c jumonji domain containing 1C JBrowse link 20 22,751,743 22,914,080 RGD:7242632
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:9104959
RGD:9479074
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:9104959
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:9104959
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:9104959
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:9104959
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:9104959
G Kat8 lysine acetyltransferase 8 JBrowse link 1 199,360,645 199,372,925 RGD:9104959
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:7242632
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:7242632
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:7242632
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:7242632
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:7242632
G Kdm3b lysine demethylase 3B JBrowse link 18 27,593,823 27,631,129 RGD:7242632
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:7242632
RGD:9479074
RGD:9479148
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:7242632
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:7242632
G Kdm4e lysine demethylase 4E JBrowse link 8 12,968,192 12,994,050 RGD:7242632
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:7242632
G Kdm5b lysine demethylase 5B JBrowse link 13 51,384,371 51,455,392 RGD:7242632
G Kdm5c lysine demethylase 5C JBrowse link X 22,302,664 22,349,298 RGD:7242632
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:7242632
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:7242632
G Kdm8 lysine demethylase 8 JBrowse link 1 196,838,460 196,854,192 RGD:7242632
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:7242632
RGD:9479053
G Kmt2b lysine methyltransferase 2B JBrowse link 1 89,022,889 89,042,176 RGD:7242632
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:7242632
RGD:9479053
G Kmt2d lysine methyltransferase 2D JBrowse link 7 140,507,137 140,542,479 RGD:7242632
RGD:9479053
G Kmt2e lysine methyltransferase 2E JBrowse link 4 8,187,751 8,255,578 RGD:7242632
G Kmt5b lysine methyltransferase 5B JBrowse link 1 219,000,844 219,050,211 RGD:7242632
G Kmt5c lysine methyltransferase 5C JBrowse link 1 72,666,662 72,674,271 RGD:7242632
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 JBrowse link 3 159,316,580 159,348,914 RGD:9479074
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:9479148
G LOC100909949 N-lysine methyltransferase SETD8-like JBrowse link 2 148,262,128 148,264,689 RGD:7242632
G LOC100911180 histone-lysine N-methyltransferase SETDB1-like RGD:7242632
G LOC100911617 protein arginine N-methyltransferase 6-like JBrowse link 2 213,173,403 213,180,727 RGD:9479047
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:9074213
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:9074213
G Mcph1 microcephalin 1 JBrowse link 16 75,904,087 76,110,624 RGD:9479074
G Mdc1 mediator of DNA damage checkpoint 1 JBrowse link 20 3,405,017 3,419,831 RGD:9479074
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:9479053
G Mtf2 metal response element binding transcription factor 2 JBrowse link 14 2,656,776 2,701,027 RGD:9479058
RGD:9479059
G Mysm1 myb-like, SWIRM and MPN domains 1 JBrowse link 5 113,902,115 113,939,083 RGD:9479061
G Nap1l1 nucleosome assembly protein 1-like 1 JBrowse link 7 54,213,305 54,237,880 RGD:9068945
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:9068945
G Ncoa6 nuclear receptor coactivator 6 JBrowse link 3 150,919,317 150,990,391 RGD:9479053
G Nsd1 nuclear receptor binding SET domain protein 1 JBrowse link 17 9,840,859 9,955,391 RGD:7242632
G Nsd3 nuclear receptor binding SET domain protein 3 JBrowse link 16 71,126,276 71,237,118 RGD:7242632
G Orc1 origin recognition complex, subunit 1 JBrowse link 5 128,186,651 128,212,901 RGD:9479074
G Pagr1 Paxip1-associated glutamate-rich protein 1 JBrowse link 1 198,448,790 198,451,078 RGD:9479053
G Paxip1 PAX interacting protein 1 JBrowse link 4 3,956,931 4,008,326 RGD:9479053
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:9479075
G Pcgf1 polycomb group ring finger 1 JBrowse link 4 113,911,129 113,913,718 RGD:9479058
RGD:9479060
G Pcgf3 polycomb group ring finger 3 JBrowse link 14 2,247,805 2,297,155 RGD:9479058
RGD:9479060
G Pcgf5 polycomb group ring finger 5 JBrowse link 1 254,974,688 255,090,925 RGD:9479058
RGD:9479060
G Pcgf6 polycomb group ring finger 6 JBrowse link 1 266,811,418 266,831,022 RGD:9479058
RGD:9479060
G Phc1 polyhomeotic homolog 1 JBrowse link 4 155,093,947 155,118,838 RGD:9479058
RGD:9479060
G Phc2 polyhomeotic homolog 2 JBrowse link 5 146,832,552 146,931,444 RGD:9479058
RGD:9479060
G Phc3 polyhomeotic homolog 3 JBrowse link 2 116,028,735 116,103,227 RGD:9479058
RGD:9479060
G Phf1 PHD finger protein 1 JBrowse link 20 5,526,926 5,531,940 RGD:9479058
RGD:9479074
RGD:9479148
RGD:9479059
G Phf19 PHD finger protein 19 JBrowse link 3 13,957,136 13,978,283 RGD:9479058
RGD:9479074
RGD:9479148
RGD:9479059
G Phf2 PHD finger protein 2 JBrowse link 17 16,240,458 16,274,626 RGD:7242632
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:7242632
G Prdm16 PR/SET domain 16 JBrowse link 5 171,662,277 171,711,561 RGD:7242632
G Prdm2 PR/SET domain 2 JBrowse link 5 161,769,587 161,879,150 RGD:7242632
G Prdm6 PR/SET domain 6 JBrowse link 18 48,433,747 48,538,834 RGD:7242632
G Prdm8 PR/SET domain 8 JBrowse link 14 13,052,776 13,073,583 RGD:7242632
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:7242632
G Prmt1 protein arginine methyltransferase 1 JBrowse link 1 100,971,132 100,980,411 RGD:9479047
G Prmt2 protein arginine methyltransferase 2 JBrowse link 20 13,154,513 13,212,613 RGD:9479047
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:9479047
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:9479047
G Rag2 recombination activating 2 JBrowse link 3 91,191,837 91,200,134 RGD:9479074
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9479058
RGD:9479059
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit JBrowse link 13 49,250,301 49,277,152 RGD:9479053
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9479058
RGD:9479059
G Ring1 ring finger protein 1 JBrowse link 20 3,812,287 3,815,834 RGD:9479058
RGD:9479060
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:9479058
RGD:9479060
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link 8 118,802,478 118,888,224 RGD:7242632
G Setd7 SET domain containing 7, histone lysine methyltransferase JBrowse link 2 140,576,188 140,618,405 RGD:7242632
G Sgf29 SAGA complex associated factor 29 JBrowse link 1 198,066,974 198,100,494 RGD:9479148
RGD:9479074
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:9104959
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:9104959
G Sirt3 sirtuin 3 JBrowse link 1 213,613,502 213,636,061 RGD:9104959
G Sirt4 sirtuin 4 JBrowse link 12 46,862,358 46,876,593 RGD:9104959
G Sirt5 sirtuin 5 JBrowse link 17 23,986,710 24,013,854 RGD:9104959
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:9104959
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:9104959
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:9479075
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:9479075
G Smyd1 SET and MYND domain containing 1 JBrowse link 4 99,071,122 99,125,143 RGD:7242632
G Smyd2 SET and MYND domain containing 2 JBrowse link 13 108,642,156 108,686,293 RGD:7242632
G Smyd3 SET and MYND domain containing 3 JBrowse link 13 97,330,120 97,807,813 RGD:7242632
G Spin1 spindlin 1 JBrowse link 16 884,854 930,527 RGD:9479148
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:9068945
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:9068945
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:7242632
G Suv39h2 suppressor of variegation 3-9 homolog 2 JBrowse link 17 78,762,897 78,782,016 RGD:7242632
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:9479058
RGD:9479059
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:9479074
RGD:9479075
G Tdrd3 tudor domain containing 3 JBrowse link 15 70,732,164 70,864,855 RGD:9479148
RGD:9479163
G Tp53bp1 tumor protein p53 binding protein 1 JBrowse link 3 113,160,030 113,259,701 RGD:9479148
RGD:9479074
G Trim24 tripartite motif-containing 24 JBrowse link 4 65,632,278 65,684,746 RGD:9479074
G Trim33 tripartite motif-containing 33 JBrowse link 2 205,783,252 205,863,426 RGD:9479074
RGD:9479075
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:9479148
RGD:9479074
G Usp12 ubiquitin specific peptidase 12 JBrowse link 12 10,037,686 10,087,685 RGD:9479061
G Usp16 ubiquitin specific peptidase 16 JBrowse link 11 27,101,213 27,130,345 RGD:9479061
G Usp21 ubiquitin specific peptidase 21 JBrowse link 13 89,655,016 89,661,150 RGD:9479061
G Usp22 ubiquitin specific peptidase 22 JBrowse link 10 47,429,201 47,453,298 RGD:9479061
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:9479061
G Usp44 ubiquitin specific peptidase 44 JBrowse link 7 34,714,293 34,759,352 RGD:9479061
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked JBrowse link Y 1,065,274 1,206,127 RGD:9479053
RGD:7242632
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:9479053
RGD:9479074
G Wdr82 WD repeat domain 82 JBrowse link 8 114,866,769 114,886,208 RGD:9479053
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta JBrowse link 7 75,573,553 75,598,295 RGD:9479074
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1578504
G Blm BLM RecQ like helicase JBrowse link 1 142,246,773 142,332,616 RGD:8662366
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1578504
RGD:8661237
G Brca2 BRCA2, DNA repair associated JBrowse link 12 503,660 544,754 RGD:6907045
RGD:8662366
G Dna2 DNA replication helicase/nuclease 2 RGD:8662366
G Eme1 essential meiotic structure-specific endonuclease 1 JBrowse link 10 82,366,820 82,375,510 RGD:6907045
G Exo1 exonuclease 1 JBrowse link 13 93,936,989 93,962,749 RGD:8662366
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:1578504
RGD:8662366
RGD:6907045
G Mus81 MUS81 structure-specific endonuclease subunit JBrowse link 1 220,862,474 220,867,973 RGD:6907045
G Nbn nibrin JBrowse link 5 29,622,347 29,656,877 RGD:1578504
RGD:8662366
RGD:6907045
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:6907045
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:6907045
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:6907045
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:6907045
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:1578504
RGD:8662366
RGD:6907045
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:6907045
RGD:8662366
G Rad51b RAD51 paralog B JBrowse link 6 102,473,978 103,018,185 RGD:8662366
G Rad51c RAD51 paralog C JBrowse link 10 74,697,713 74,724,004 RGD:6907045
RGD:8662366
G Rad51d RAD51 paralog D JBrowse link 10 70,222,703 70,241,352 RGD:8662366
G Rad52 RAD52 homolog, DNA repair protein JBrowse link 4 152,429,826 152,451,875 RGD:6907045
G Rad54b RAD54 homolog B JBrowse link 5 25,140,531 25,214,469 RGD:6907045
RGD:8662366
G Rad54l RAD54 like JBrowse link 5 134,948,511 134,978,125 RGD:6907045
G Rbbp8 RB binding protein 8, endonuclease JBrowse link 18 3,134,630 3,227,702 RGD:8661237
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:6907045
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:6907045
G Rpa3 replication protein A3 JBrowse link 4 34,279,320 34,282,351 RGD:6907045
G Sem1 SEM1, 26S proteasome complex subunit JBrowse link 4 32,067,444 32,087,600 RGD:6907045
G Ssbp1 single stranded DNA binding protein 1 JBrowse link 4 68,634,844 68,645,112 RGD:6907045
G Top3a DNA topoisomerase III alpha JBrowse link 10 46,980,646 47,018,728 RGD:6907045
G Top3b DNA topoisomerase III beta JBrowse link 11 88,346,305 88,374,896 RGD:6907045
G Xrcc2 X-ray repair cross complementing 2 JBrowse link 4 5,842,013 5,860,516 RGD:6907045
RGD:8662366
G Xrcc3 X-ray repair cross complementing 3 JBrowse link 6 136,366,917 136,380,751 RGD:8662366
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:9495926
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:9495926
G Actr5 actin related protein 5 JBrowse link 3 155,118,567 155,132,073 RGD:9495926
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:9495926
G Actr8 actin related protein 8 JBrowse link 16 6,047,977 6,062,586 RGD:9495926
G Brd8 bromodomain containing 8 JBrowse link 18 27,375,645 27,423,989 RGD:9495926
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:9495926
G Ep400 E1A binding protein p400 JBrowse link 12 51,948,650 52,055,274 RGD:9495926
G Epc1 enhancer of polycomb homolog 1 JBrowse link 17 57,303,968 57,394,975 RGD:9495926
G Epc2 enhancer of polycomb homolog 2 JBrowse link 3 33,641,616 33,741,219 RGD:9495926
G Ing3 inhibitor of growth family, member 3 JBrowse link 4 49,017,235 49,044,450 RGD:9495926
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:9495926
G Ino80b INO80 complex subunit B JBrowse link 4 113,954,612 113,957,774 RGD:9495926
G Ino80c INO80 complex subunit C JBrowse link 18 15,995,005 16,009,639 RGD:9495926
G Ino80d INO80 complex subunit D JBrowse link 9 69,820,520 69,887,475 RGD:9495926
G Ino80e INO80 complex subunit E JBrowse link 1 198,287,489 198,298,076 RGD:9495926
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:9495926
G Mcrs1 microspherule protein 1 JBrowse link 7 140,910,420 140,919,234 RGD:9495926
G Meaf6 MYST/Esa1-associated factor 6 JBrowse link 5 143,081,298 143,103,225 RGD:9495926
G Morf4l2 mortality factor 4 like 2 JBrowse link X 107,394,468 107,405,564 RGD:9495926
G Nfrkb nuclear factor related to kappa B binding protein JBrowse link 8 32,530,412 32,561,955 RGD:9495926
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:9495926
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:9495926
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:9495926
G Tfpt TCF3 fusion partner JBrowse link 1 64,162,525 64,172,307 RGD:9495926
G Trrap transformation/transcription domain-associated protein JBrowse link 12 11,537,950 11,627,563 RGD:9495926
G Uchl5 ubiquitin C-terminal hydrolase L5 JBrowse link 13 60,568,102 60,603,812 RGD:9495926
G Vps72 vacuolar protein sorting 72 homolog JBrowse link 2 196,277,961 196,289,549 RGD:9495926
G Yeats4 YEATS domain containing 4 JBrowse link 7 60,287,477 60,294,618 RGD:9495926
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:9495926
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:9495926
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz1a bromodomain adjacent to zinc finger domain, 1A JBrowse link 6 75,793,223 75,873,854 RGD:9495920
G Baz1b bromodomain adjacent to zinc finger domain, 1B JBrowse link 12 24,478,882 24,536,851 RGD:9495920
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:9495920
G Chrac1 chromatin accessibility complex subunit 1 JBrowse link 7 114,323,542 114,326,930 RGD:9495920
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:9495920
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9495920
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9495920
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:9495920
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:9495920
mismatch repair pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exo1 exonuclease 1 JBrowse link 13 93,936,989 93,962,749 RGD:2306716
RGD:6907045
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:2306716
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:2306716
RGD:6907045
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:2306716
RGD:6907045
G Mlh3 mutL homolog 3 JBrowse link 6 109,059,386 109,095,876 RGD:2306716
RGD:6907045
G Msh2 mutS homolog 2 JBrowse link 6 11,215,951 11,274,916 RGD:2306716
RGD:6907045
G Msh3 mutS homolog 3 JBrowse link 2 21,790,048 21,931,791 RGD:2306716
RGD:6907045
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:2306716
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:2306716
RGD:6907045
G Pms1 PMS1 homolog 1, mismatch repair system component JBrowse link 9 53,120,656 53,206,520 RGD:2306716
G Pms2 PMS1 homolog 2, mismatch repair system component JBrowse link 12 12,714,394 12,738,654 RGD:2306716
RGD:6907045
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:2306716
RGD:6907045
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:2306716
RGD:6907045
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:2306716
RGD:6907045
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:2306716
RGD:6907045
G Rfc1 replication factor C subunit 1 JBrowse link 14 44,627,528 44,702,205 RGD:2306716
RGD:6907045
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:2306716
RGD:6907045
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:2306716
RGD:6907045
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:2306716
RGD:6907045
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:2306716
RGD:6907045
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:2306716
RGD:6907045
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:2306716
RGD:6907045
G Rpa3 replication protein A3 JBrowse link 4 34,279,320 34,282,351 RGD:2306716
RGD:6907045
G Ssbp1 single stranded DNA binding protein 1 JBrowse link 4 68,634,844 68,645,112 RGD:6907045
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aplf aprataxin and PNKP like factor JBrowse link 4 119,514,822 119,568,764 RGD:8662352
G Aptx aprataxin JBrowse link 5 56,987,714 57,009,481 RGD:8662352
G Dclre1c DNA cross-link repair 1C JBrowse link 17 78,782,512 78,812,140 RGD:6907045
RGD:8662352
G Dntt DNA nucleotidylexotransferase JBrowse link 1 260,289,626 260,321,174 RGD:6907045
RGD:8662352
G Fen1 flap structure-specific endonuclease 1 JBrowse link 1 226,251,516 226,256,160 RGD:6907045
G Lig4 DNA ligase 4 JBrowse link 16 85,331,771 85,339,496 RGD:6907045
RGD:8662352
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:6907045
G Nhej1 nonhomologous end-joining factor 1 JBrowse link 9 82,230,230 82,327,923 RGD:6907045
RGD:8662352
G Pnkp polynucleotide kinase 3'-phosphatase JBrowse link 1 100,853,475 100,859,202 RGD:8662352
G Poll DNA polymerase lambda JBrowse link 1 265,290,337 265,298,847 RGD:6907045
RGD:8662352
G Polm DNA polymerase mu JBrowse link 14 86,069,378 86,079,327 RGD:6907045
RGD:8662352
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:8662352
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:6907045
G Rif1 replication timing regulatory factor 1 JBrowse link 3 37,599,540 37,648,818 RGD:8661237
G Tp53bp1 tumor protein p53 binding protein 1 JBrowse link 3 113,160,030 113,259,701 RGD:8661237
G Xrcc4 X-ray repair cross complementing 4 JBrowse link 2 18,674,496 18,927,463 RGD:6907045
RGD:8662352
G Xrcc5 X-ray repair cross complementing 5 JBrowse link 9 79,659,275 79,748,050 RGD:6907045
RGD:8662352
G Xrcc6 X-ray repair cross complementing 6 JBrowse link 7 123,259,881 123,280,613 RGD:6907045
RGD:8662352
nucleotide excision repair pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnh cyclin H JBrowse link 2 13,593,100 13,613,910 RGD:6907045
G Cdk7 cyclin-dependent kinase 7 JBrowse link 2 30,710,642 30,735,522 RGD:6907045
G Cetn2 centrin 2 JBrowse link X 152,927,852 152,933,095 RGD:6907045
RGD:7246920
G Cul4a cullin 4A JBrowse link 16 81,718,784 81,756,653 RGD:6907045
G Cul4b cullin 4B JBrowse link X 124,831,391 124,870,329 RGD:6907045
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:6907045
RGD:7246920
G Ddb2 damage specific DNA binding protein 2 JBrowse link 3 80,030,437 80,052,984 RGD:7246920
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:6907045
RGD:7246926
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:6907045
RGD:10402751
RGD:7246920
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 18 25,037,668 25,068,380 RGD:6907045
RGD:7246920
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 10 2,010,140 2,037,953 RGD:6907045
RGD:10402751
RGD:7246926
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 JBrowse link 10 92,631 117,648 RGD:6907045
G Ercc5 ERCC excision repair 5, endonuclease JBrowse link 9 50,928,847 50,970,962 RGD:6907045
RGD:10402751
RGD:7246926
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:6907045
RGD:7246923
RGD:7246919
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit JBrowse link 2 39,434,617 39,473,392 RGD:6907045
RGD:7246923
RGD:7246919
G Gtf2h1 general transcription factor IIH subunit 1 JBrowse link 1 102,849,618 102,877,939 RGD:6907045
RGD:7246920
G Gtf2h2 general transcription factor IIH subunit 2 JBrowse link 2 30,494,718 30,522,716 RGD:6907045
RGD:7246922
G Gtf2h3 general transcription factor IIH subunit 3 JBrowse link 12 37,427,556 37,444,027 RGD:6907045
G Gtf2h4 general transcription factor 2H subunit 4 JBrowse link 20 3,582,688 3,588,373 RGD:6907045
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:6907045
G Hmgn1 high mobility group nucleosome binding domain 1 JBrowse link 11 36,474,028 36,479,947 RGD:7246919
G Lig1 DNA ligase 1 JBrowse link 1 75,356,212 75,394,757 RGD:1358139
RGD:10402751
RGD:7246935
RGD:6907045
G Lig3 DNA ligase 3 JBrowse link 10 70,134,734 70,158,051 RGD:7246935
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:7246936
G Mnat1 MNAT1 component of CDK activating kinase JBrowse link 6 95,995,341 96,153,331 RGD:6907045
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:6907045
RGD:10402751
RGD:7246932
RGD:7246931
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:1358139
RGD:7246935
RGD:6907045
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:6907045
RGD:7246935
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:6907045
RGD:7246935
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:6907045
RGD:7246935
G Pole DNA polymerase epsilon, catalytic subunit JBrowse link 12 52,403,533 52,452,075 RGD:6907045
RGD:10402751
RGD:7246936
RGD:7246935
G Pole2 DNA polymerase epsilon 2, accessory subunit JBrowse link 6 91,494,348 91,532,355 RGD:6907045
RGD:7246936
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:6907045
RGD:7246936
G Pole4 DNA polymerase epsilon 4, accessory subunit JBrowse link 4 113,491,644 113,497,455 RGD:6907045
RGD:7246936
G Polk DNA polymerase kappa JBrowse link 2 27,305,718 27,364,906 RGD:7246935
G Polr1a RNA polymerase I subunit A JBrowse link 4 99,822,964 99,903,969 RGD:10402751
G Rad23a RAD23 homolog A, nucleotide excision repair protein JBrowse link 19 25,949,488 25,956,677 RGD:6907045
RGD:10402751
G Rad23b RAD23 homolog B, nucleotide excision repair protein JBrowse link 5 72,103,704 72,141,701 RGD:6907045
RGD:7246920
G Rbx1 ring-box 1 JBrowse link 7 122,700,849 122,710,907 RGD:6907045
G Rfc1 replication factor C subunit 1 JBrowse link 14 44,627,528 44,702,205 RGD:6907045
RGD:10402751
RGD:7246932
G Rfc2 replication factor C subunit 2 JBrowse link 12 25,130,375 25,143,480 RGD:6907045
RGD:7246932
G Rfc3 replication factor C subunit 3 JBrowse link 12 1,460,581 1,471,344 RGD:6907045
RGD:7246932
G Rfc4 replication factor C subunit 4 JBrowse link 11 81,358,592 81,373,044 RGD:6907045
RGD:7246932
G Rfc5 replication factor C subunit 5 JBrowse link 12 44,931,494 44,941,051 RGD:6907045
RGD:7246932
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:6907045
RGD:7246926
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:6907045
RGD:7246926
G Rpa3 replication protein A3 JBrowse link 4 34,279,320 34,282,351 RGD:6907045
RGD:7246926
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:10402751
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:7246919
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:6907045
RGD:10402751
RGD:7246926
G Xpc XPC complex subunit, DNA damage recognition and repair factor JBrowse link 4 123,134,457 123,161,985 RGD:6907045
RGD:7246922
RGD:7246920
G Xrcc1 X-ray repair cross complementing 1 JBrowse link 1 81,412,635 81,441,680 RGD:7246935
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:9495920
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:8694154
RGD:9495920
G Actl6b actin-like 6B JBrowse link 12 22,194,595 22,211,107 RGD:8694154
RGD:9495920
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:8694154
RGD:9495920
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:8694154
RGD:9495920
G Arid2 AT-rich interaction domain 2 JBrowse link 7 137,680,564 137,798,329 RGD:8694154
RGD:9495920
G Brd7 bromodomain containing 7 JBrowse link 19 19,672,780 19,701,484 RGD:8694154
RGD:9495920
G Brd9 bromodomain containing 9 JBrowse link 1 31,939,612 31,968,120 RGD:9495920
G Dpf1 double PHD fingers 1 JBrowse link 1 87,248,448 87,258,070 RGD:8694154
RGD:9495920
G Dpf2 double PHD fingers 2 JBrowse link 1 221,253,764 221,269,043 RGD:8694154
RGD:9495920
G Dpf3 double PHD fingers 3 JBrowse link 6 106,660,569 106,971,310 RGD:8694154
RGD:9495920
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:8694154
RGD:9495920
G Phf10 PHD finger protein 10 JBrowse link 1 56,951,516 56,967,893 RGD:8694154
RGD:9495920
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:8694154
RGD:9495920
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:8694154
RGD:9495920
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:8694154
RGD:9495920
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:8694154
RGD:9495920
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:8694154
RGD:9495920
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 7 141,355,623 141,366,725 RGD:8694154
RGD:9495920
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 10 94,451,866 94,460,732 RGD:8694154
RGD:9495920
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:8694154
RGD:9495920
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:8694154
RGD:9495920

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6016
    regulatory pathway 3823
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1709
        DNA repair pathway 371
          altered DNA repair pathway + 14
          chromatin modification/remodeling pathway + 255
          double-strand DNA repair pathway + 48
          single-strand DNA repair pathway + 83
Path 2
Term Annotations click to browse term
  pathway 6016
    regulatory pathway 3823
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1709
        DNA damage response pathway 392
          DNA repair pathway 371
            altered DNA repair pathway + 14
            chromatin modification/remodeling pathway + 255
            double-strand DNA repair pathway + 48
            single-strand DNA repair pathway + 83
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.