Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:DNA repair pathway
go back to main search page
Accession:PW:0000099 term browser browse the term
Definition:The pathways involved in the repair of damaged DNA. The damage can involve mismatched or damaged bases, distortion of the helix or breaks in the DNA double strand. Repair of DNA lesions along with the upstream lesion detection and signaling its presence are collectively known as the DNA damage response.
Synonyms:related_synonym: DNA Repair



show annotations for term's descendants           Sort by:
altered DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO in silico assessment of loss of DNA-protein interactions and observed enhancement of DNA repair capacity (DRC) in the context of nucleotide excision repair (NER) pathway for SNP RGD PMID:24004570 RGD:9588971 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
JBrowse link
altered mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlh1 mutL homolog 1 ISO RGD PMID:11900875 PMID:19078924 RGD:2306714, RGD:4143515 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Msh2 mutS homolog 2 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:11900875 RGD:2306714 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO RGD PMID:11900875 RGD:2306714 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
altered nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddb1 damage-specific DNA binding protein 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ISO in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP RGD PMID:22824526 PMID:24004570 RGD:7246919, RGD:9588971 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease ISO RGD PMID:22824526 RGD:7246919 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO RGD PMID:22824526 RGD:7246919 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor ISO RGD PMID:22824526 RGD:7246919 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 RGD:8694154 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 RGD:8694154 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 RGD:8694154 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO RGD PMID:23355908 RGD:8694154 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
base excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA
ISS
KEGG
RGD
PMID: PMID:16221808 rno:03410, RGD:1358139, RGD:1578408 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA KEGG rno:03410 NCBI chr  X:19,425,684...19,508,459
Ensembl chr  X:19,487,419...19,508,439
JBrowse link
G Fen1 flap structure-specific endonuclease 1 IEA KEGG rno:03410 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Hmgb1 high mobility group box 1 IEA KEGG rno:03410 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Hmgb1-ps33 high-mobility group box 1, pseudogene 33 IEA KEGG rno:03410 NCBI chr19:55,045,869...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hmgb1l5 high mobility group box 1 like 5 IEA KEGG rno:03410 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G Lig1 DNA ligase 1 IEA KEGG
RGD
PMID: rno:03410, RGD:1358139 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 IEA KEGG rno:03410 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase IEA KEGG rno:03410 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
JBrowse link
G Mpg N-methylpurine-DNA glycosylase IEA KEGG
RGD
PMID: rno:03410, RGD:1358139 NCBI chr10:15,396,246...15,402,528
Ensembl chr10:15,395,782...15,402,520
JBrowse link
G Mutyh mutY DNA glycosylase IEA KEGG rno:03410 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146
JBrowse link
G Neil1 nei-like DNA glycosylase 1 IEA KEGG rno:03410 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258
JBrowse link
G Neil2 nei-like DNA glycosylase 2 IEA KEGG rno:03410 NCBI chr15:37,444,676...37,454,863
Ensembl chr15:37,445,381...37,454,863
JBrowse link
G Neil3 nei-like DNA glycosylase 3 IEA KEGG rno:03410 NCBI chr16:38,359,305...38,418,528
Ensembl chr16:38,359,371...38,418,527
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 IEA KEGG rno:03410 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase ISS
IEA
KEGG
RGD
PMID:16221808 rno:03410, RGD:1578408 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 IEA KEGG rno:03410 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 IEA KEGG rno:03410 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 IEA KEGG rno:03410 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
G Pcna proliferating cell nuclear antigen IEA KEGG rno:03410 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Polb DNA polymerase beta IEA KEGG rno:03410 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IEA KEGG rno:03410 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IEA KEGG rno:03410 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IEA KEGG rno:03410 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IEA KEGG rno:03410 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IEA KEGG rno:03410 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit IEA KEGG rno:03410 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IEA KEGG rno:03410 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231
JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit IEA KEGG rno:03410 NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097
JBrowse link
G Poll DNA polymerase lambda IEA KEGG rno:03410 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IEA KEGG rno:03410 NCBI chr 7:134,288,565...134,302,179
Ensembl chr 7:134,287,675...134,297,226
JBrowse link
G Tdg thymine-DNA glycosylase IEA KEGG rno:03410 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Ung uracil-DNA glycosylase IEA KEGG rno:03410 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISS
IEA
KEGG
RGD
PMID:16221808 rno:03410, RGD:1578408 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd3 chromodomain helicase DNA binding protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr10:54,063,629...54,090,030
Ensembl chr10:54,063,629...54,090,047
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO RGD PMID:24880148 RGD:9585661 NCBI chr16:19,429,578...19,520,320
Ensembl chr16:19,429,578...19,519,587
JBrowse link
G Gatad2b GATA zinc finger domain containing 2B ISO RGD PMID:24880148 RGD:9585661 NCBI chr 2:175,748,594...175,829,837
Ensembl chr 2:175,749,433...175,825,542
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165
JBrowse link
G Mta1 metastasis associated 1 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Mta2 metastasis associated 1 family, member 2 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 1:205,838,181...205,846,903
Ensembl chr 1:205,837,964...205,846,946
JBrowse link
G Mta3 metastasis associated 1 family, member 3 ISO RGD PMID:24880148 RGD:9585661 NCBI chr 6:10,867,028...10,987,221
Ensembl chr 6:10,867,011...10,986,883
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:24880148 RGD:9585661 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226
JBrowse link
DNA modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:23697932 RGD:9479164 NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551
JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 6:26,791,517...26,902,161
Ensembl chr 6:26,822,609...26,896,687
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 3:142,130,588...142,169,128
Ensembl chr 3:142,130,592...142,169,124
JBrowse link
G Ebf1 EBF transcription factor 1 ISO RGD PMID:24825349 RGD:8695944 NCBI chr10:29,095,858...29,489,142
Ensembl chr10:29,099,933...29,487,665
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23697932 RGD:9479164 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23697932 RGD:9479164 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23697932 RGD:9479164 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase ISO RGD PMID:23324617 RGD:8695954 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Nanog Nanog homeobox ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:24825349 RGD:8695944 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO RGD PMID:24825349 RGD:8695944 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468
JBrowse link
G Prdm14 PR/SET domain 14 ISO RGD PMID:24825349 RGD:8695944 NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712
JBrowse link
G Sin3a SIN3 transcription regulator family member A ISO RGD PMID:24825349 RGD:8695944 NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192
JBrowse link
G Spi1 Spi-1 proto-oncogene ISO RGD PMID:24825349 RGD:8695944 NCBI chr 3:77,059,744...77,093,730
Ensembl chr 3:77,073,012...77,092,393
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 ISO RGD PMID:22770212 PMID:24825349 RGD:8695943, RGD:8695944 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 ISO RGD PMID:22770212 PMID:23697932 PMID:24825349 RGD:8695943, RGD:9479164, RGD:8695944 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
JBrowse link
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 1:227,814,639...227,877,907
Ensembl chr 1:227,814,963...227,877,904
JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 ISO RGD PMID:23324617 RGD:8695954 NCBI chr  X:116,963,337...116,970,547
Ensembl chr  X:116,963,347...116,971,023
JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 ISO RGD PMID:23324617 RGD:8695954 NCBI chr 8:97,284,617...97,288,518
Ensembl chr 8:97,280,993...97,485,625
JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 ISO RGD PMID:23324617 RGD:8695954 NCBI chr10:54,480,698...54,501,492
Ensembl chr10:54,485,071...54,501,492
JBrowse link
G Zfp57 zinc finger protein 57 ISO RGD PMID:23324617 RGD:8695954 NCBI chr20:1,521,323...1,534,884
Ensembl chr20:1,521,323...1,529,846
JBrowse link
histone modification pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp2 AE binding protein 2 ISO RGD PMID:24148750 RGD:9479059 NCBI chr 4:173,527,881...173,566,033
Ensembl chr 4:173,528,344...173,593,100
JBrowse link
G Aplf aprataxin and PNKP like factor ISO RGD PMID:23288364 RGD:9068945 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO RGD PMID:23288364 RGD:9068945 NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549
JBrowse link
G Ash1l ASH1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:174,346,267...174,483,057
Ensembl chr 2:174,346,150...174,483,055
JBrowse link
G Ash2l ASH2 like histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr16:66,242,205...66,264,064
Ensembl chr16:66,242,212...66,264,061
JBrowse link
G Bap1 BRCA1 associated deubiquitinase 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535
JBrowse link
G Birc5 baculoviral IAP repeat-containing 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr10:103,072,530...103,081,382
Ensembl chr10:103,073,408...103,081,380
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:24686119 PMID:23642229 RGD:9479075, RGD:9479074 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080
JBrowse link
G Brd1 bromodomain containing 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:119,774,187...119,822,032
Ensembl chr 7:119,774,188...119,822,031
JBrowse link
G Brd2 bromodomain containing 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr20:4,727,078...4,735,389
Ensembl chr20:4,728,151...4,735,388
JBrowse link
G Brd3 bromodomain containing 3 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577
JBrowse link
G Brd4 bromodomain containing 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:24686119 RGD:9479075 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494
JBrowse link
G Brdt bromodomain testis associated ISO RGD PMID:24686119 RGD:9479075 NCBI chr14:2,387,372...2,445,857
Ensembl chr14:2,387,796...2,445,842
JBrowse link
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 8:20,097,262...20,141,950
Ensembl chr 8:20,097,254...20,147,689
JBrowse link
G Cbx2 chromobox 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,278,517...104,287,384
Ensembl chr10:104,278,549...104,287,383
JBrowse link
G Cbx4 chromobox 4 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,337,140...104,343,210
Ensembl chr10:104,336,876...104,356,706
JBrowse link
G Cbx5 chromobox 5 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
JBrowse link
G Cbx6 chromobox 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:111,372,979...111,383,026
Ensembl chr 7:111,372,980...111,383,091
JBrowse link
G Cbx7 chromobox 7 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973
JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr10:104,294,518...104,296,956
Ensembl chr10:104,294,518...104,297,024
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:33,200,894...33,221,076
Ensembl chr11:33,200,981...33,221,070
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 1:56,661,743...56,729,119
Ensembl chr 1:56,664,054...56,728,125
JBrowse link
G Crebbp CREB binding protein ISO RGD PMID:21151613 PMID:24686119 RGD:9104959, RGD:9479075 NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
JBrowse link
G Cxxc1 CXXC finger protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr18:67,813,185...67,818,556
Ensembl chr18:67,813,206...67,818,551
JBrowse link
G Daxx death-domain associated protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr20:4,970,090...4,976,145
Ensembl chr20:4,970,092...4,975,843
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 7:8,918,764...8,959,474
Ensembl chr 7:8,917,786...8,956,475
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 6:102,841,403...103,125,558
Ensembl chr 6:102,846,029...103,125,493
JBrowse link
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr 6:21,120,947...21,141,720
Ensembl chr 6:21,120,947...21,141,432
JBrowse link
G Eed embryonic ectoderm development ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974
JBrowse link
G Ehmt1 euchromatic histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 3:7,580,680...7,729,046
Ensembl chr 3:7,580,683...7,729,007
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO RGD PMID:23200123 PMID:23642229 RGD:7242632, RGD:9479074 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547
JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:86,126,023...86,162,001
Ensembl chr10:86,126,015...86,161,921
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23200123 PMID:24148750 PMID:23473600 RGD:7242632, RGD:9479059, RGD:9479058 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362
JBrowse link
G H2ax H2A.X variant histone ISO RGD PMID:24614311 RGD:9075965 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G H2az1 H2A.Z variant histone 1 ISO RGD PMID:24696452 RGD:9074213 NCBI chr 2:226,355,668...226,357,984
Ensembl chr 2:226,355,708...226,358,485
JBrowse link
G H3f3a H3.3 histone A ISO RGD PMID:24614311 RGD:9075965 NCBI chr13:92,533,289...92,544,902
Ensembl chr13:92,533,298...92,544,908
JBrowse link
G H3f3b H3.3 histone B ISO RGD PMID:24614311 RGD:9075965 NCBI chr10:101,256,484...101,258,716
Ensembl chr10:101,256,480...101,258,709
JBrowse link
G Hat1 histone acetyltransferase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 3:56,217,344...56,265,021
Ensembl chr 3:56,217,342...56,275,517
JBrowse link
G Hcfc1 host cell factor C1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr  X:151,687,779...151,712,688
Ensembl chr  X:151,687,779...151,712,638
JBrowse link
G Hdac1 histone deacetylase 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac10 histone deacetylase 10 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
G Hdac11 histone deacetylase 11 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 4:123,645,873...123,667,407
Ensembl chr 4:123,650,157...123,667,405
JBrowse link
G Hdac2 histone deacetylase 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Hdac3 histone deacetylase 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856
JBrowse link
G Hdac4 histone deacetylase 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hdac5 histone deacetylase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
JBrowse link
G Hdac6 histone deacetylase 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:14,550,645...14,572,445
Ensembl chr  X:14,551,044...14,572,441
JBrowse link
G Hdac7 histone deacetylase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:128,923,918...128,961,926
Ensembl chr 7:128,923,920...128,962,072
JBrowse link
G Hdac8 histone deacetylase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr  X:67,385,288...67,593,014
Ensembl chr  X:67,385,289...67,592,923
JBrowse link
G Hdac9 histone deacetylase 9 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
JBrowse link
G Hira histone cell cycle regulator ISO RGD PMID:23288364 RGD:9068945 NCBI chr11:82,024,469...82,133,212
Ensembl chr11:82,024,469...82,133,529
JBrowse link
G Hjurp Holliday junction recognition protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 9:88,853,379...88,867,730
Ensembl chr 9:88,853,386...88,867,728
JBrowse link
G Ing2 inhibitor of growth family, member 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:44,573,592...44,584,180
Ensembl chr16:44,575,597...44,583,482
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Jmjd1c jumonji domain containing 1C ISO RGD PMID:23200123 RGD:7242632 NCBI chr20:21,332,147...21,494,220
Ensembl chr20:21,332,147...21,463,122
JBrowse link
G Kat2a lysine acetyltransferase 2A ISO RGD PMID:21151613 PMID:23642229 RGD:9104959, RGD:9479074 NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kat2b lysine acetyltransferase 2B ISO RGD PMID:21151613 RGD:9104959 NCBI chr 9:6,562,525...6,667,064
Ensembl chr 9:6,562,288...6,667,064
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Kat6a lysine acetyltransferase 6A ISO RGD PMID:21151613 RGD:9104959 NCBI chr16:69,084,914...69,165,923
Ensembl chr16:69,084,914...69,163,606
JBrowse link
G Kat6b lysine acetyltransferase 6B ISO RGD PMID:21151613 RGD:9104959 NCBI chr15:2,638,885...2,811,977
Ensembl chr15:2,639,200...2,812,316
JBrowse link
G Kat7 lysine acetyltransferase 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Kat8 lysine acetyltransferase 8 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319
JBrowse link
G Kdm1b lysine demethylase 1B ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:17,602,961...17,643,865
Ensembl chr17:17,602,961...17,643,800
JBrowse link
G Kdm2a lysine demethylase 2A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Kdm2b lysine demethylase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Kdm3a lysine demethylase 3A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073
JBrowse link
G Kdm3b lysine demethylase 3B ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:26,380,859...26,436,701
Ensembl chr18:26,380,964...26,436,628
JBrowse link
G Kdm4a lysine demethylase 4A ISO RGD PMID:23200123 PMID:23642229 PMID:24035451 RGD:7242632, RGD:9479074, RGD:9479148 NCBI chr 5:131,672,754...131,719,534
Ensembl chr 5:131,672,754...131,719,501
JBrowse link
G Kdm4b lysine demethylase 4B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 9:1,158,737...1,237,233
Ensembl chr 9:1,158,752...1,236,543
JBrowse link
G Kdm4c lysine demethylase 4C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818
JBrowse link
G Kdm4d lysine demethylase 4D ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G Kdm5a lysine demethylase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:153,565,909...153,643,912
Ensembl chr 4:153,565,846...153,642,422
JBrowse link
G Kdm5b lysine demethylase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Kdm5c lysine demethylase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:21,345,459...21,387,045
Ensembl chr  X:21,345,481...21,381,870
JBrowse link
G Kdm5d lysine demethylase 5D ISO RGD PMID:23200123 RGD:7242632 NCBI chr  Y:527,069...624,019
Ensembl chr  Y:530,401...624,018
JBrowse link
G Kdm6a lysine demethylase 6A ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23200123 RGD:7242632 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
G Kdm7a lysine demethylase 7A ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:67,899,407...67,974,264
Ensembl chr 4:67,904,307...67,966,998
JBrowse link
G Kdm8 lysine demethylase 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841
JBrowse link
G Kmt2a lysine methyltransferase 2A ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Kmt2b lysine methyltransferase 2B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:85,821,700...85,840,987
Ensembl chr 1:85,821,753...85,841,326
JBrowse link
G Kmt2c lysine methyltransferase 2C ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
JBrowse link
G Kmt2d lysine methyltransferase 2D ISO RGD PMID:23200123 PMID:22663077 RGD:7242632, RGD:9479053 NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325
JBrowse link
G Kmt2e lysine methyltransferase 2E ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:11,658,218...11,727,373
Ensembl chr 4:11,658,979...11,727,373
JBrowse link
G Kmt5a lysine methyltransferase 5A ISO RGD PMID:23200123 RGD:7242632 NCBI chr12:32,139,353...32,167,777
Ensembl chr12:32,139,178...32,162,711
JBrowse link
G Kmt5al1 lysine methyltransferase 5A like 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:142,289,672...142,292,195 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
JBrowse link
G Kmt5c lysine methyltransferase 5C ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233
JBrowse link
G Lbr lamin B receptor ISO RGD PMID:24035451 RGD:9479148 NCBI chr13:93,539,386...93,564,026
Ensembl chr13:93,538,920...93,564,017
JBrowse link
G LOC100911617 protein arginine N-methyltransferase 6-like ISO RGD PMID:24583552 RGD:9479047
G Macroh2a1 macroH2A.1 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
JBrowse link
G Macroh2a2 macroH2A.2 histone ISO RGD PMID:24696452 RGD:9074213 NCBI chr20:29,678,194...29,727,867
Ensembl chr20:29,678,222...29,727,891
JBrowse link
G Mcph1 microcephalin 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr16:71,021,855...71,224,067
Ensembl chr16:71,024,588...71,224,122
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240
JBrowse link
G Men1 menin 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:203,638,905...203,644,871
Ensembl chr 1:203,639,000...203,644,871
JBrowse link
G Mtf2 metal response element binding transcription factor 2 ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr14:1,639,256...1,683,513
Ensembl chr14:1,640,746...1,683,524
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 5:109,761,345...109,826,652
Ensembl chr 5:109,776,286...109,819,967
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 7:46,933,278...46,957,853
Ensembl chr 7:46,933,356...46,956,593
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO RGD PMID:23288364 RGD:9068945 NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928
JBrowse link
G Ncoa6 nuclear receptor coactivator 6 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:9,311,963...9,426,373
Ensembl chr17:9,315,237...9,425,358
JBrowse link
G Nsd3 nuclear receptor binding SET domain protein 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr16:66,354,030...66,466,202
Ensembl chr16:66,358,973...66,465,423
JBrowse link
G Orc1 origin recognition complex, subunit 1 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 5:123,324,273...123,348,375
Ensembl chr 5:123,324,315...123,348,375
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 1:181,622,698...181,625,024 JBrowse link
G Paxip1 PAX interacting protein 1 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 4:7,525,132...7,576,659
Ensembl chr 4:7,525,004...7,576,548
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:24686119 RGD:9479075 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:115,576,165...115,587,019
Ensembl chr 4:115,583,867...115,587,008
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058 RGD:9479060 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406
JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr14:1,237,594...1,291,717
Ensembl chr14:1,233,947...1,291,793
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:234,063,854...234,180,022
Ensembl chr 1:234,063,892...234,175,315
JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 1:245,925,354...245,944,964
Ensembl chr 1:245,925,360...245,944,914
JBrowse link
G Phc1 polyhomeotic homolog 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 4:155,510,274...155,532,636
Ensembl chr 4:155,510,274...155,533,959
JBrowse link
G Phc2 polyhomeotic homolog 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 5:141,000,604...141,099,268
Ensembl chr 5:141,050,842...141,099,268
JBrowse link
G Phc3 polyhomeotic homolog 3 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr 2:112,408,709...112,483,719
Ensembl chr 2:112,408,531...112,476,540
JBrowse link
G Phf1 PHD finger protein 1 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871
JBrowse link
G Phf19 PHD finger protein 19 ISO RGD PMID:23473600 PMID:23642229 PMID:24035451 PMID:24148750 RGD:9479058, RGD:9479074, RGD:9479148, RGD:9479059 NCBI chr 3:18,175,281...18,197,289
Ensembl chr 3:18,175,282...18,196,405
JBrowse link
G Phf2 PHD finger protein 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:15,783,221...15,851,209
Ensembl chr17:15,781,864...15,851,208
JBrowse link
G Phf8 PHD finger protein 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:20,524,103...20,623,459
Ensembl chr  X:20,524,558...20,623,410
JBrowse link
G Prdm16 PR/SET domain 16 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:164,879,864...165,203,986
Ensembl chr 5:164,880,587...165,203,601
JBrowse link
G Prdm2 PR/SET domain 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 5:155,421,066...155,531,884
Ensembl chr 5:155,422,134...155,531,825
JBrowse link
G Prdm6 PR/SET domain 6 ISO RGD PMID:23200123 RGD:7242632 NCBI chr18:46,904,115...47,008,482
Ensembl chr18:46,904,127...47,007,823
JBrowse link
G Prdm8 PR/SET domain 8 ISO RGD PMID:23200123 RGD:7242632 NCBI chr14:11,403,202...11,424,059
Ensembl chr14:11,404,407...11,410,993
JBrowse link
G Prdm9 PR/SET domain 9 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Prmt1 protein arginine methyltransferase 1 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345
JBrowse link
G Prmt2 protein arginine methyltransferase 2 ISO RGD PMID:24583552 RGD:9479047 NCBI chr20:12,394,748...12,420,643
Ensembl chr20:12,394,798...12,420,643
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO RGD PMID:24583552 RGD:9479047 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO RGD PMID:24583552 RGD:9479047 NCBI chr 2:197,927,750...197,932,760
Ensembl chr 2:197,927,220...197,933,648
JBrowse link
G Prmt7 protein arginine methyltransferase 7 ISO RGD PMID:24583552 RGD:9479047 NCBI chr19:34,110,724...34,161,531
Ensembl chr19:34,110,747...34,162,577
JBrowse link
G Rag2 recombination activating 2 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 3:87,902,373...87,910,227
Ensembl chr 3:87,902,238...87,911,066
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ISO RGD PMID:22663077 RGD:9479053 NCBI chr13:43,912,254...43,939,107
Ensembl chr13:43,912,254...43,939,107
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226
JBrowse link
G Ring1 ring finger protein 1 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
JBrowse link
G Rnf2 ring finger protein 2 ISO RGD PMID:23473600 PMID:25065329 RGD:9479058, RGD:9479060 NCBI chr13:63,553,964...63,584,047
Ensembl chr13:63,554,862...63,583,099
JBrowse link
G Setd1a SET domain containing 1A, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr 1:182,386,197...182,411,695
Ensembl chr 1:182,388,060...182,411,090
JBrowse link
G Setd1b SET domain containing 1B, histone lysine methyltransferase ISO RGD PMID:22663077 PMID:23200123 RGD:7242632 RGD:9479053 NCBI chr12:33,395,963...33,421,671
Ensembl chr12:33,396,120...33,426,934
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:135,562,683...135,605,468
Ensembl chr 2:135,562,683...135,605,468
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506
JBrowse link
G Sgf29 SAGA complex associated factor 29 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 1:181,238,458...181,271,931
Ensembl chr 1:181,238,468...181,274,781
JBrowse link
G Sirt1 sirtuin 1 ISO RGD PMID:21151613 RGD:9104959 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Sirt2 sirtuin 2 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Sirt3 sirtuin 3 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 1:195,942,066...195,964,472
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
G Sirt4 sirtuin 4 ISO RGD PMID:21151613 RGD:9104959 NCBI chr12:41,125,533...41,139,440
Ensembl chr12:41,131,262...41,139,439
JBrowse link
G Sirt5 sirtuin 5 ISO RGD PMID:21151613 RGD:9104959 NCBI chr17:21,310,028...21,337,137
Ensembl chr17:21,310,028...21,337,101
JBrowse link
G Sirt6 sirtuin 6 ISO RGD PMID:21151613 RGD:9104959 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Sirt7 sirtuin 7 ISO RGD PMID:21151613 RGD:9104959 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO RGD PMID:24686119 RGD:9479075 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smyd1 SET and MYND domain containing 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr 4:103,195,330...103,252,989
Ensembl chr 4:103,200,322...103,311,766
JBrowse link
G Smyd2 SET and MYND domain containing 2 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:101,425,270...101,466,576
Ensembl chr13:101,425,273...101,466,576
JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO RGD PMID:23200123 RGD:7242632 NCBI chr13:90,709,263...91,266,209
Ensembl chr13:90,709,270...91,266,253
JBrowse link
G Spin1 spindlin 1 ISO RGD PMID:24035451 RGD:9479148 NCBI chr17:14,055,685...14,105,366
Ensembl chr17:14,055,689...14,105,411
JBrowse link
G Ssrp1 structure specific recognition protein 1 ISO RGD PMID:23288364 RGD:9068945 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit ISO RGD PMID:23288364 RGD:9068945 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:14,421,028...14,433,993
Ensembl chr  X:14,421,109...14,433,982
JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 ISO RGD PMID:23200123 RGD:7242632 NCBI chr  X:141,792,589...141,795,257 JBrowse link
G Suv39h2 SUV39H2 histone lysine methyltransferase ISO RGD PMID:23200123 RGD:7242632 NCBI chr17:74,756,290...74,775,332
Ensembl chr17:74,756,306...74,775,332
JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit ISO RGD PMID:23473600 PMID:24148750 RGD:9479058, RGD:9479059 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543
JBrowse link
G Tdrd3 tudor domain containing 3 ISO RGD PMID:24035451 PMID:23211769 RGD:9479148, RGD:9479163 NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Trim24 tripartite motif-containing 24 ISO RGD PMID:23642229 RGD:9479074 NCBI chr 4:66,567,342...66,692,029
Ensembl chr 4:66,566,686...66,717,241
JBrowse link
G Trim33 tripartite motif-containing 33 ISO RGD PMID:23642229 PMID:24686119 RGD:9479074, RGD:9479075 NCBI chr 2:190,812,329...190,892,663
Ensembl chr 2:190,807,243...190,888,814
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 ISO RGD PMID:24035451 PMID:23642229 RGD:9479148, RGD:9479074 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
JBrowse link
G Usp12 ubiquitin specific peptidase 12 ISO RGD PMID:24647359 RGD:9479061 NCBI chr12:8,309,845...8,363,686
Ensembl chr12:8,309,750...8,363,656
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO RGD PMID:24647359 RGD:9479061 NCBI chr11:26,681,359...26,711,313
Ensembl chr11:26,681,414...26,710,539
JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO RGD PMID:24647359 RGD:9479061 NCBI chr13:83,702,672...83,709,215
Ensembl chr13:83,702,631...83,708,717
JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO RGD PMID:24647359 RGD:9479061 NCBI chr10:45,828,619...45,855,468
Ensembl chr10:45,828,622...45,855,497
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111
JBrowse link
G Usp44 ubiquitin specific peptidase 44 ISO RGD PMID:24647359 RGD:9479061 NCBI chr 7:28,364,169...28,412,039
Ensembl chr 7:28,364,033...28,410,053
JBrowse link
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked ISO RGD PMID:22663077 PMID:23200123 RGD:9479053, RGD:7242632 NCBI chr  Y:942,838...1,105,313
Ensembl chr  Y:924,168...1,103,422
JBrowse link
G Wdr5 WD repeat domain 5 ISO RGD PMID:22663077 PMID:23642229 RGD:9479053, RGD:9479074 NCBI chr 3:10,836,964...10,856,682
Ensembl chr 3:10,837,025...10,856,671
JBrowse link
G Wdr82 WD repeat domain 82 ISO RGD PMID:22663077 RGD:9479053 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438
JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta ISO RGD PMID:23642229 RGD:9479074 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668
JBrowse link
homologous recombination pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO RGD PMID:16498454 RGD:1578504 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Blm BLM RecQ like helicase ISO RGD PMID:20690856 RGD:8662366 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated ISS
ISO
RGD PMID:16498454 PMID:24326623 RGD:1578504, RGD:8661237 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated IEA
ISO
KEGG
RGD
PMID:20690856 rno:03440, RGD:8662366 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 ISO RGD PMID:20690856 RGD:8662366 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 IEA KEGG rno:03440 NCBI chr10:79,586,718...79,595,515
Ensembl chr10:79,586,729...79,595,435
JBrowse link
G Exo1 exonuclease 1 ISO RGD PMID:20690856 RGD:8662366 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease ISS
ISO
IEA
KEGG
RGD
PMID:16498454 PMID:20690856 rno:03440, RGD:1578504, RGD:8662366 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit IEA KEGG rno:03440 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Nbn nibrin ISS
ISO
IEA
KEGG
RGD
PMID:16498454 PMID:20690856 rno:03440, RGD:1578504, RGD:8662366 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IEA KEGG rno:03440 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IEA KEGG rno:03440 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IEA KEGG rno:03440 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IEA KEGG rno:03440 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Rad50 RAD50 double strand break repair protein ISS
ISO
IEA
KEGG
RGD
PMID:16498454 PMID:20690856 rno:03440, RGD:1578504, RGD:8662366 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51 RAD51 recombinase IEA
ISO
KEGG
RGD
PMID:20690856 rno:03440, RGD:8662366 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51b RAD51 paralog B ISO RGD PMID:20690856 RGD:8662366 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979
JBrowse link
G Rad51c RAD51 paralog C IEA
ISO
KEGG
RGD
PMID:20690856 rno:03440, RGD:8662366 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad51d RAD51 paralog D ISO RGD PMID:20690856 RGD:8662366 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein IEA KEGG rno:03440 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rad54b RAD54 homolog B IEA
ISO
KEGG
RGD
PMID:20690856 rno:03440, RGD:8662366 NCBI chr 5:25,032,112...25,104,630
Ensembl chr 5:25,032,066...25,104,616
JBrowse link
G Rad54l RAD54 like IEA KEGG rno:03440 NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:24326623 RGD:8661237 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rpa1 replication protein A1 IEA KEGG rno:03440 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 IEA KEGG rno:03440 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 IEA KEGG rno:03440 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Sem1 SEM1 26S proteasome subunit IEA KEGG rno:03440 NCBI chr 4:34,671,848...34,692,005
Ensembl chr 4:34,671,848...34,692,005
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 IEA KEGG rno:03440 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
G Top3a DNA topoisomerase III alpha IEA KEGG rno:03440 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559
JBrowse link
G Top3b DNA topoisomerase III beta IEA KEGG rno:03440 NCBI chr11:84,097,018...84,125,474
Ensembl chr11:84,097,026...84,125,392
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 IEA
ISO
KEGG
RGD
PMID:20690856 rno:03440, RGD:8662366 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 ISO RGD PMID:20690856 RGD:8662366 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actl6a actin-like 6A ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actr5 actin related protein 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:147,282,461...147,295,870
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr6 actin related protein 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:24,150,250...24,171,057
Ensembl chr 7:24,150,250...24,171,067
JBrowse link
G Actr8 actin related protein 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Brd8 bromodomain containing 8 ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:26,204,892...26,229,999
Ensembl chr18:26,181,732...26,229,884
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Ep400 E1A binding protein p400 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Epc1 enhancer of polycomb homolog 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425
JBrowse link
G Epc2 enhancer of polycomb homolog 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:33,867,219...33,967,908
Ensembl chr 3:33,867,219...33,967,150
JBrowse link
G Ing3 inhibitor of growth family, member 3 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:50,477,954...50,505,168
Ensembl chr 4:50,477,962...50,503,715
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80b INO80 complex subunit B ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:115,627,907...115,631,069
Ensembl chr 4:115,627,908...115,631,456
JBrowse link
G Ino80c INO80 complex subunit C ISO RGD PMID:21502417 RGD:9495926 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80d INO80 complex subunit D ISO RGD PMID:21502417 RGD:9495926 NCBI chr 9:64,447,075...64,514,013
Ensembl chr 9:64,457,165...64,515,242
JBrowse link
G Ino80e INO80 complex subunit E ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Kat5 lysine acetyltransferase 5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Mcrs1 microspherule protein 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:130,383,853...130,392,667
Ensembl chr 7:130,383,853...130,392,685
JBrowse link
G Meaf6 MYST/Esa1-associated factor 6 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 5:137,344,681...137,369,703
Ensembl chr 5:137,344,380...137,370,014
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Morf4l2 mortality factor 4 like 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728
JBrowse link
G Mrgbp MRG domain binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 3:167,697,129...167,700,592
Ensembl chr 3:167,697,185...167,700,592
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 8:29,831,802...29,863,360
Ensembl chr 8:29,831,812...29,863,359
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Srcap Snf2-related CREBBP activator protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:182,123,562...182,172,643
Ensembl chr 1:182,118,416...182,176,610
JBrowse link
G Tfpt TCF3 fusion partner ISO RGD PMID:21502417 RGD:9495926 NCBI chr 1:65,587,633...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:9,738,006...9,827,708
Ensembl chr12:9,738,006...9,827,674
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO RGD PMID:21502417 RGD:9495926 NCBI chr13:55,520,722...55,556,503
Ensembl chr13:55,520,729...55,556,502
JBrowse link
G Vps72 vacuolar protein sorting 72 homolog ISO RGD PMID:21502417 RGD:9495926 NCBI chr 2:182,678,594...182,690,185
Ensembl chr 2:182,678,609...182,690,182
JBrowse link
G Yeats4 YEATS domain containing 4 ISO RGD PMID:21502417 RGD:9495926 NCBI chr 7:52,858,313...52,865,454
Ensembl chr 7:52,858,305...52,865,635
JBrowse link
G Yy1 YY1 transcription factor ISO RGD PMID:21502417 RGD:9495926 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 ISO RGD PMID:21502417 RGD:9495926 NCBI chr12:19,686,606...19,692,880
Ensembl chr12:19,686,148...19,692,880
JBrowse link
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1a bromodomain adjacent to zinc finger domain, 1A ISO RGD PMID:21358755 RGD:9495920 NCBI chr 6:72,389,701...72,512,516
Ensembl chr 6:72,389,703...72,512,459
JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain, 1B ISO RGD PMID:21358755 RGD:9495920 NCBI chr12:21,431,985...21,489,956
Ensembl chr12:21,431,985...21,490,426
JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 7:105,013,047...105,016,435
Ensembl chr 7:105,013,015...105,017,136
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr 5:141,655,863...141,675,157
Ensembl chr 5:141,638,421...141,675,284
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:31,913,080...31,931,245
Ensembl chr  X:31,913,081...31,931,226
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 ISO RGD PMID:21358755 RGD:9495920 NCBI chr  X:126,980,201...127,066,385
Ensembl chr  X:126,994,947...127,066,347
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO RGD PMID:21358755 RGD:9495920 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
mismatch repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G Hmgb1 high mobility group box 1 ISO RGD PMID:18157157 RGD:2306716 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Lig1 DNA ligase 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Mlh1 mutL homolog 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh2 mutS homolog 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 ISO RGD PMID:18157157 RGD:2306716 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Pcna proliferating cell nuclear antigen ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component ISO RGD PMID:18157157 RGD:2306716 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:10,676,818...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Rfc1 replication factor C subunit 1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc2 replication factor C subunit 2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G Rpa1 replication protein A1 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 ISO
IEA
KEGG
RGD
PMID:18157157 rno:03430, RGD:2306716 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 IEA KEGG rno:03430 NCBI chr 4:69,266,024...69,276,135
Ensembl chr 4:69,266,102...69,276,135
JBrowse link
non-homologous end joining pathway of double-strand break repair term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor ISO RGD PMID:20192759 RGD:8662352 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Aptx aprataxin ISO RGD PMID:20192759 RGD:8662352 NCBI chr 5:55,798,896...55,822,963
Ensembl chr 5:55,800,248...55,822,855
JBrowse link
G Dclre1c DNA cross-link repair 1C IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Dntt DNA nucleotidylexotransferase IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Fen1 flap structure-specific endonuclease 1 IEA KEGG rno:03450 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Lig4 DNA ligase 4 IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease IEA KEGG rno:03450 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO RGD PMID:20192759 RGD:8662352 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Poll DNA polymerase lambda IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Polm DNA polymerase mu IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr14:80,707,075...80,716,677
Ensembl chr14:80,706,345...80,717,086
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO RGD PMID:20192759 RGD:8662352 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rad50 RAD50 double strand break repair protein IEA KEGG rno:03450 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease ISO RGD PMID:19633668 RGD:401940172 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rif1 replication timing regulatory factor 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO RGD PMID:24326623 RGD:8661237 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 9:73,955,216...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 IEA
ISO
KEGG
RGD
PMID:20192759 rno:03450, RGD:8662352 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
nucleotide excision repair pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H IEA KEGG rno:03420 NCBI chr 2:15,835,064...15,855,648
Ensembl chr 2:15,834,833...15,855,819
JBrowse link
G Cdk7 cyclin-dependent kinase 7 IEA KEGG rno:03420 NCBI chr 2:31,840,558...31,865,422
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Cetn2 centrin 2 IEA
ISO
KEGG
RGD
PMID:22572993 rno:03420, RGD:7246920 NCBI chr  X:150,769,944...150,774,833
Ensembl chr  X:150,769,953...150,774,919
JBrowse link
G Cul4a cullin 4A IEA KEGG rno:03420 NCBI chr16:76,385,298...76,422,316
Ensembl chr16:76,384,546...76,422,330
JBrowse link
G Cul4b cullin 4B IEA KEGG rno:03420 NCBI chr  X:117,287,481...117,326,688
Ensembl chr  X:117,287,484...117,326,688
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 IEA
ISO
KEGG
RGD
PMID:22572993 rno:03420, RGD:7246920 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO RGD PMID:22572993 RGD:7246920 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit IEA
ISO
KEGG
RGD
PMID:19154342 rno:03420, RGD:7246926 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit IEA
ISO
KEGG
SMPDB
RGD
PMID:22572993 SMP:00478 rno:03420, RGD:7246920 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA
ISO
KEGG
RGD
PMID:22572993 rno:03420, RGD:7246920 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit IEA
ISO
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 rno:03420, RGD:7246926 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 IEA KEGG rno:03420 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease IEA
ISO
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 rno:03420, RGD:7246926 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IEA
ISO
KEGG
RGD
PMID:18166977 PMID:22824526 rno:03420, RGD:7246923, RGD:7246919 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IEA
ISO
KEGG
RGD
PMID:18166977 PMID:22824526 rno:03420, RGD:7246923, RGD:7246919 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 IEA
ISO
KEGG
RGD
PMID:22572993 rno:03420, RGD:7246920 NCBI chr 1:97,321,417...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 IEA
ISO
KEGG
RGD
PMID:21763452 rno:03420, RGD:7246922 NCBI chr 2:31,623,752...31,652,697
Ensembl chr 2:31,624,678...31,652,592
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 IEA KEGG rno:03420 NCBI chr12:32,009,010...32,025,484
Ensembl chr12:32,009,014...32,025,497
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 IEA KEGG rno:03420 NCBI chr20:3,071,328...3,076,990
Ensembl chr20:3,071,328...3,076,984
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 IEA KEGG rno:03420 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 ISO RGD PMID:22824526 RGD:7246919 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Lig1 DNA ligase 1 IEA
ISO
SMPDB
KEGG
RGD
PMID: PMID:21601536 SMP:00478 rno:03420, RGD:1358139, RGD:7246935 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 ISO RGD PMID:21601536 RGD:7246935 NCBI chr10:67,717,808...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase IEA KEGG rno:03420 NCBI chr 6:91,814,703...91,971,945
Ensembl chr 6:91,814,749...91,970,744
JBrowse link
G Pcna proliferating cell nuclear antigen IEA
ISO
KEGG
SMPDB
RGD
PMID:23545418 PMID:17512402 SMP:00478 rno:03420, RGD:7246932, RGD:7246931 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IEA
ISO
KEGG
RGD
PMID: PMID:21601536 rno:03420, RGD:1358139, RGD:7246935 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IEA
ISO
KEGG
RGD
PMID:21601536 rno:03420, RGD:7246935 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IEA
ISO
KEGG
RGD
PMID:21601536 rno:03420, RGD:7246935 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IEA
ISO
KEGG
RGD
PMID:21601536 rno:03420, RGD:7246935 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IEA
ISO
KEGG
SMPDB
RGD
PMID:12806123 PMID:21601536 SMP:00478 rno:03420, RGD:7246936, RGD:7246935 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit IEA
ISO
KEGG
RGD
PMID:12806123 rno:03420, RGD:7246936 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IEA
ISO
KEGG
RGD
PMID:12806123 rno:03420, RGD:7246936 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231
JBrowse link
G Pole3-ps3 DNA polymerase epsilon 3, accessory subunit, pseudogene 3 ISO RGD PMID:12806123 RGD:7246936 NCBI chr 7:109,236,108...109,236,813
Ensembl chr 7:109,236,321...109,236,758
JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit IEA
ISO
KEGG
RGD
PMID:12806123 rno:03420, RGD:7246936 NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097
JBrowse link
G Polk DNA polymerase kappa ISO RGD PMID:21601536 RGD:7246935 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Polr1a RNA polymerase I subunit A ISO SMPDB SMP:00478 NCBI chr 4:103,950,051...104,014,022
Ensembl chr 4:103,950,051...104,014,020
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein IEA
ISO
KEGG
SMPDB
SMP:00478 rno:03420 NCBI chr19:23,313,563...23,320,702
Ensembl chr19:23,314,797...23,320,695
JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein IEA
ISO
KEGG
RGD
PMID:22572993 rno:03420, RGD:7246920 NCBI chr 5:70,090,232...70,128,340
Ensembl chr 5:70,090,232...70,128,319
JBrowse link
G Rbx1 ring-box 1 IEA KEGG rno:03420 NCBI chr 7:112,976,863...113,001,051
Ensembl chr 7:112,990,835...113,001,051
JBrowse link
G Rfc1 replication factor C subunit 1 IEA
ISO
KEGG
SMPDB
RGD
PMID:23545418 SMP:00478 rno:03420, RGD:7246932 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc2 replication factor C subunit 2 IEA
ISO
KEGG
RGD
PMID:23545418 rno:03420, RGD:7246932 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 IEA
ISO
KEGG
RGD
PMID:23545418 rno:03420, RGD:7246932 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 IEA
ISO
KEGG
RGD
PMID:23545418 rno:03420, RGD:7246932 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 IEA
ISO
KEGG
RGD
PMID:23545418 rno:03420, RGD:7246932 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G Rpa1 replication protein A1 IEA
ISO
KEGG
RGD
PMID:19154342 rno:03420, RGD:7246926 NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 IEA
ISO
KEGG
RGD
PMID:19154342 rno:03420, RGD:7246926 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 IEA
ISO
KEGG
RGD
PMID:19154342 rno:03420, RGD:7246926 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A ISO SMPDB SMP:00478 NCBI chr 1:33,765,949...33,799,405
Ensembl chr 1:33,765,672...33,799,433
JBrowse link
G Xab2 XPA binding protein 2 ISO RGD PMID:22824526 RGD:7246919 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor IEA
ISO
KEGG
SMPDB
RGD
PMID:19154342 SMP:00478 rno:03420, RGD:7246926 NCBI chr 5:60,431,673...60,475,726
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor IEA
ISO
KEGG
RGD
PMID:21763452 PMID:22572993 rno:03420, RGD:7246922, RGD:7246920 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO RGD PMID:21601536 RGD:7246935 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO RGD PMID:21358755 RGD:9495920 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Actl6a actin-like 6A ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Actl6b actin-like 6B ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr12:19,124,887...19,141,419
Ensembl chr12:19,124,916...19,141,376
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 5:145,908,173...145,981,552
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:45,567,991...45,923,644
Ensembl chr 1:45,563,623...45,923,493
JBrowse link
G Arid2 AT-rich interaction domain 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:127,447,192...127,565,987
Ensembl chr 7:127,447,278...127,563,512
JBrowse link
G Brd7 bromodomain containing 7 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr19:18,708,792...18,737,497
Ensembl chr19:18,709,022...18,737,494
JBrowse link
G Brd9 bromodomain containing 9 ISO RGD PMID:21358755 RGD:9495920 NCBI chr 1:29,329,981...29,357,285
Ensembl chr 1:29,329,985...29,357,016
JBrowse link
G Dpf1 double PHD fingers 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:84,602,212...84,615,954
Ensembl chr 1:84,602,336...84,615,950
JBrowse link
G Dpf2 double PHD fingers 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:203,183,674...203,199,037
Ensembl chr 1:203,183,686...203,198,983
JBrowse link
G Dpf3 double PHD fingers 3 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 6:102,841,403...103,125,558
Ensembl chr 6:102,846,029...103,125,493
JBrowse link
G Pbrm1 polybromo 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780
JBrowse link
G Phf10 PHD finger protein 10 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:55,952,249...55,968,994
Ensembl chr 1:55,952,253...55,969,038
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 1:224,191,125...224,358,640
Ensembl chr 1:224,191,125...224,358,684
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 8:110,111,097...110,214,734
Ensembl chr 8:110,111,122...110,214,720
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:881,844...910,090
Ensembl chr 7:881,421...909,978
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 7:130,829,783...130,840,323
Ensembl chr 7:130,829,768...130,840,323
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr10:91,193,752...91,202,817
Ensembl chr10:91,193,752...91,204,341
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ISO RGD PMID:23355908 PMID:21358755 RGD:8694154, RGD:9495920 NCBI chr10:84,159,270...84,180,547
Ensembl chr10:84,159,275...84,179,989
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        DNA repair pathway 384
          altered DNA repair pathway + 14
          chromatin modification/remodeling pathway + 268
          double-strand DNA repair pathway + 48
          single-strand DNA repair pathway + 83
Path 2
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3867
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1738
        DNA damage response pathway 405
          DNA repair pathway 384
            altered DNA repair pathway + 14
            chromatin modification/remodeling pathway + 268
            double-strand DNA repair pathway + 48
            single-strand DNA repair pathway + 83
paths to the root