Nanog (Nanog homeobox) - Rat Genome Database

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Gene: Nanog (Nanog homeobox) Chinchilla lanigera
Analyze
Symbol: Nanog
Name: Nanog homeobox
RGD ID: 8988473
Description: ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell dedifferentiation (ortholog); cell differentiation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH colon cancer (ortholog); developmental and epileptic encephalopathy 21 (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); condensed chromosome (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein NANOG
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,561,323 - 6,565,770 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nanog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,561,323 - 6,565,770 (+)NCBIChiLan1.0ChiLan1.0
NANOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,789,402 - 7,799,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,787,794 - 7,799,146 (+)EnsemblGRCh38hg38GRCh38
GRCh37127,941,998 - 7,951,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,833,262 - 7,839,922 (+)NCBINCBI36Build 36hg18NCBI36
Build 34127,833,261 - 7,839,922NCBI
Celera129,520,085 - 9,526,744 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef127,755,619 - 7,762,294 (+)NCBIHuRef
CHM1_1127,941,303 - 7,947,961 (+)NCBICHM1_1
T2T-CHM13v2.0127,803,995 - 7,813,735 (+)NCBIT2T-CHM13v2.0
Nanog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,684,448 - 122,691,592 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,684,448 - 122,691,592 (+)EnsemblGRCm39 Ensembl
GRCm386122,707,489 - 122,714,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,707,489 - 122,714,633 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,657,586 - 122,663,796 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,673,114 - 122,680,252 (+)NCBIMGSCv36mm8
Celera6124,507,792 - 124,514,310 (+)NCBICelera
Cytogenetic Map6F1NCBI
cM Map657.8NCBI
Nanog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,615,687 - 157,623,061 (+)NCBIGRCr8
mRatBN7.24155,943,737 - 155,951,116 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4155,943,737 - 155,951,116 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,211,480 - 162,218,867 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04186,563,349 - 186,570,736 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,639,759 - 156,647,147 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,531,906 - 155,539,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,531,906 - 155,539,268 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,552,995 - 222,560,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,190,786 - 159,198,160 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,438,699 - 159,441,754 (+)NCBI
Celera4144,763,722 - 144,771,060 (+)NCBICelera
Cytogenetic Map4q42NCBI
NANOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,347,790 - 13,354,739 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,344,549 - 13,351,498 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,913,037 - 7,919,715 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,070,877 - 8,077,556 (+)NCBIpanpan1.1PanPan1.1panPan2
NANOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,262,558 - 37,266,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,348,312 - 9,354,207 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,614,640 - 37,620,732 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12737,494,510 - 37,500,598 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,530,317 - 37,536,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,831,817 - 8,837,819 (-)NCBIUU_Cfam_GSD_1.0
Nanog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,997,260 - 99,003,117 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936892181,834 - 187,691 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NANOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,932,382 - 62,939,082 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,931,642 - 62,939,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,798,046 - 65,843,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NANOG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,813,309 - 7,820,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666063363,373 - 369,814 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nanog
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248605,026,203 - 5,037,219 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005379613   ⟹   XP_005379670
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554136,561,323 - 6,565,770 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379670 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024395.1
RefSeq Acc Id: XP_005379670   ⟸   XM_005379613
- UniProtKB: A0A8C2W530 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Homeobox


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016751 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024630.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
NCBI Gene Nanog ENTREZGENE
PANTHER HOMEOBOX PROTEIN UniProtKB/TrEMBL
  HOMEOBOX PROTEIN NANOG UniProtKB/TrEMBL
Pfam Homeodomain UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A8C2W530 ENTREZGENE, UniProtKB/TrEMBL