Nanog (Nanog homeobox) - Rat Genome Database
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Gene: Nanog (Nanog homeobox) Mus musculus
Analyze
Symbol: Nanog
Name: Nanog homeobox
RGD ID: 1553059
MGI Page MGI
Description: Exhibits several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity; and identical protein binding activity. Involved in several processes, including negative regulation of BMP signaling pathway; regulation of transcription by RNA polymerase II; and response to retinoic acid. Localizes to nucleoplasm. Is expressed in several structures, including early conceptus; genitourinary system; gut; hemolymphoid system; and primitive streak. Orthologous to several human genes including NANOG (Nanog homeobox).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 2410002E02Rik; early embryo specific expression NK family; early embryo specific expression NK-type homeobox protein; ecat; ecat4; EN; ENK; ES cell-associated protein 4; homeobox protein NANOG; homeobox transcription factor Nanog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm15901   Nanog-ps1   Nanog-ps2  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,684,448 - 122,691,592 (+)NCBIGRCm39mm39
GRCm39 Ensembl6122,684,448 - 122,691,592 (+)Ensembl
GRCm386122,707,489 - 122,714,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,707,489 - 122,714,633 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,657,586 - 122,663,796 (+)NCBIGRCm37mm9NCBIm37
MGSCv366122,673,114 - 122,680,252 (+)NCBImm8
Celera6124,507,792 - 124,514,310 (+)NCBICelera
Cytogenetic Map6F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(S)-naringenin  (ISO)
(S)-nicotine  (EXP,ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methoxy-17beta-estradiol  (EXP)
3,5,6-trichloro-2-pyridinol  (EXP)
3,5,6-trichloropyridine-2-one  (EXP)
3-methyladenine  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (EXP,ISO)
acetic acid  (EXP)
acrylamide  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP,ISO)
apigenin  (ISO)
arsenous acid  (EXP,ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bromochloroacetic acid  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
carboplatin  (ISO)
casticin  (ISO)
CHIR 99021  (ISO)
chlorpromazine  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
ciprofloxacin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
crocidolite asbestos  (EXP)
curcumin  (EXP)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
deoxycholic acid  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (EXP,ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fluoxetine  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
furan  (ISO)
gemcitabine  (ISO)
GW 4064  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
kaempferol  (EXP)
lead diacetate  (EXP)
limonin  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
lupeol  (EXP)
LY294002  (EXP)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nicotine  (EXP,ISO)
nocodazole  (ISO)
Nonylphenol  (EXP)
paclitaxel  (ISO)
panobinostat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sirolimus  (EXP)
sodium arsenite  (EXP,ISO)
sodium chlorate  (EXP)
stigmasterol  (EXP)
sunitinib  (ISO)
Tanshinone I  (EXP,ISO)
taurocholic acid  (EXP)
thalidomide  (EXP)
thymoquinone  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triclosan  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12609610   PMID:12787504   PMID:12787505   PMID:12904583   PMID:14610273   PMID:14623818   PMID:14728807  
PMID:15233988   PMID:15494369   PMID:15502159   PMID:15525667   PMID:15582778   PMID:15619621   PMID:15788452   PMID:15860457   PMID:15916719   PMID:15939376   PMID:15963972   PMID:16141072  
PMID:16141073   PMID:16166633   PMID:16259959   PMID:16313224   PMID:16325481   PMID:16456133   PMID:16501172   PMID:16518401   PMID:16541131   PMID:16678776   PMID:16714766   PMID:16728477  
PMID:16767105   PMID:16773043   PMID:16790525   PMID:16791199   PMID:16801560   PMID:16840789   PMID:16845474   PMID:16894029   PMID:16908534   PMID:17060609   PMID:17093407   PMID:17204467  
PMID:17211451   PMID:17287250   PMID:17352742   PMID:17360937   PMID:17518637   PMID:17554336   PMID:17554338   PMID:17615266   PMID:17669361   PMID:17676645   PMID:17699604   PMID:17936260  
PMID:17938196   PMID:17938240   PMID:17940068   PMID:17950287   PMID:18024963   PMID:18061570   PMID:18073198   PMID:18083014   PMID:18083160   PMID:18086680   PMID:18097409   PMID:18177668  
PMID:18199879   PMID:18200042   PMID:18223644   PMID:18264089   PMID:18287559   PMID:18290762   PMID:18371336   PMID:18371436   PMID:18371449   PMID:18400104   PMID:18425773   PMID:18436640  
PMID:18442017   PMID:18448678   PMID:18453147   PMID:18454139   PMID:18467660   PMID:18478268   PMID:18522731   PMID:18575582   PMID:18584034   PMID:18653541   PMID:18662995   PMID:18687992  
PMID:18725515   PMID:18799693   PMID:18802003   PMID:18806776   PMID:18832072   PMID:18957414   PMID:18974875   PMID:18983963   PMID:18983969   PMID:19022741   PMID:19036726   PMID:19087264  
PMID:19139101   PMID:19150979   PMID:19151700   PMID:19171902   PMID:19366700   PMID:19400741   PMID:19403798   PMID:19447925   PMID:19483677   PMID:19544422   PMID:19564890   PMID:19582141  
PMID:19701907   PMID:19703398   PMID:19710168   PMID:19785992   PMID:19796622   PMID:19845468   PMID:19906868   PMID:19933152   PMID:19955426   PMID:20007774   PMID:20018908   PMID:20026622  
PMID:20071344   PMID:20103622   PMID:20123909   PMID:20346354   PMID:20412781   PMID:20435031   PMID:20479880   PMID:20539761   PMID:20574542   PMID:20581802   PMID:20581804   PMID:20622153  
PMID:20629982   PMID:20646110   PMID:20661723   PMID:20720539   PMID:20858271   PMID:20872845   PMID:20876643   PMID:20925113   PMID:20932939   PMID:20937355   PMID:20962578   PMID:21062744  
PMID:21076177   PMID:21115610   PMID:21119109   PMID:21138972   PMID:21146513   PMID:21163256   PMID:21187909   PMID:21194951   PMID:21245162   PMID:21267068   PMID:21304588   PMID:21337463  
PMID:21385842   PMID:21448134   PMID:21471155   PMID:21483752   PMID:21490431   PMID:21497086   PMID:21499299   PMID:21504946   PMID:21589869   PMID:21609209   PMID:21677750   PMID:21731673  
PMID:21810410   PMID:21873635   PMID:21874018   PMID:21915945   PMID:21969378   PMID:22013995   PMID:22028025   PMID:22142851   PMID:22172669   PMID:22206758   PMID:22315219   PMID:22327294  
PMID:22333836   PMID:22337995   PMID:22388986   PMID:22424930   PMID:22438569   PMID:22529382   PMID:22589736   PMID:22683858   PMID:22713603   PMID:22745796   PMID:22770845   PMID:22787153  
PMID:22795133   PMID:22807480   PMID:22969005   PMID:22980982   PMID:22982455   PMID:22988117   PMID:22992952   PMID:22992956   PMID:23034635   PMID:23040477   PMID:23054952   PMID:23071603  
PMID:23077180   PMID:23077213   PMID:23103910   PMID:23132827   PMID:23154415   PMID:23178592   PMID:23193166   PMID:23200040   PMID:23213213   PMID:23293288   PMID:23295861   PMID:23329853  
PMID:23333380   PMID:23395962   PMID:23444350   PMID:23463509   PMID:23470161   PMID:23473982   PMID:23474895   PMID:23487311   PMID:23582324   PMID:23649762   PMID:23651855   PMID:23665121  
PMID:23671187   PMID:23728800   PMID:23747191   PMID:23760955   PMID:23762465   PMID:23770853   PMID:23788624   PMID:23791530   PMID:23791728   PMID:23798425   PMID:23824537   PMID:23892456  
PMID:23934214   PMID:23963652   PMID:24036311   PMID:24059348   PMID:24063807   PMID:24076654   PMID:24183668   PMID:24183939   PMID:24227785   PMID:24268575   PMID:24292013   PMID:24333425  
PMID:24335282   PMID:24357321   PMID:24461999   PMID:24462001   PMID:24466030   PMID:24472544   PMID:24504341   PMID:24527385   PMID:24681518   PMID:24695638   PMID:24711389   PMID:24793005  
PMID:24803390   PMID:24835466   PMID:24836291   PMID:24859004   PMID:24929238   PMID:24952961   PMID:24979572   PMID:25005472   PMID:25142465   PMID:25146928   PMID:25173648   PMID:25209243  
PMID:25240402   PMID:25263278   PMID:25284313   PMID:25335925   PMID:25340657   PMID:25359213   PMID:25377420   PMID:25397698   PMID:25410303   PMID:25416063   PMID:25445595   PMID:25456834  
PMID:25516968   PMID:25522312   PMID:25569111   PMID:25588837   PMID:25605784   PMID:25739401   PMID:25743411   PMID:25753417   PMID:25805847   PMID:25810472   PMID:25825768   PMID:26116663  
PMID:26199412   PMID:26296469   PMID:26341559   PMID:26411691   PMID:26445504   PMID:26453549   PMID:26498761   PMID:26511926   PMID:26523946   PMID:26549484   PMID:26551560   PMID:26582088  
PMID:26589352   PMID:26598619   PMID:26641717   PMID:26642061   PMID:26660234   PMID:26724859   PMID:26733157   PMID:26751055   PMID:26760119   PMID:26795560   PMID:26797124   PMID:26902285  
PMID:26975336   PMID:26975355   PMID:27015307   PMID:27065194   PMID:27125671   PMID:27146218   PMID:27226076   PMID:27256596   PMID:27292645   PMID:27579714   PMID:27586544   PMID:27622636  
PMID:27649575   PMID:27723719   PMID:27773674   PMID:27886188   PMID:27939294   PMID:28087629   PMID:28093523   PMID:28115466   PMID:28118982   PMID:28199843   PMID:28253866   PMID:28289135  
PMID:28373172   PMID:28401892   PMID:28436127   PMID:28457890   PMID:28552557   PMID:28552559   PMID:28619992   PMID:28636920   PMID:28870993   PMID:28961274   PMID:28963472   PMID:29079783  
PMID:29101321   PMID:29168693   PMID:29186120   PMID:29245050   PMID:29263902   PMID:29320730   PMID:29412136   PMID:29454706   PMID:29476172   PMID:29593216   PMID:29631477   PMID:29741478  
PMID:29915126   PMID:29933066   PMID:29964027   PMID:30026265   PMID:30110177   PMID:30111536   PMID:30463900   PMID:30530745   PMID:30550788   PMID:30552867   PMID:30595499   PMID:30595535  
PMID:30654938   PMID:30715198   PMID:30783098   PMID:30790630   PMID:30809310   PMID:30814124   PMID:30837263   PMID:30842444   PMID:30842446   PMID:30846691   PMID:30905739   PMID:30913328  
PMID:31051141   PMID:31077711   PMID:31204172   PMID:31228531   PMID:31262352   PMID:31279504   PMID:31320324   PMID:31444221   PMID:31575647   PMID:31582397   PMID:31588228   PMID:31671403  
PMID:31754036   PMID:31792383   PMID:31891567   PMID:32145514   PMID:32296071   PMID:32367046   PMID:32413083   PMID:32640900   PMID:32681107   PMID:32848249   PMID:33058869   PMID:33127892  
PMID:33239783   PMID:33503260  


Genomics

Comparative Map Data
Nanog
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,684,448 - 122,691,592 (+)NCBIGRCm39mm39
GRCm39 Ensembl6122,684,448 - 122,691,592 (+)Ensembl
GRCm386122,707,489 - 122,714,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,707,489 - 122,714,633 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,657,586 - 122,663,796 (+)NCBIGRCm37mm9NCBIm37
MGSCv366122,673,114 - 122,680,252 (+)NCBImm8
Celera6124,507,792 - 124,514,310 (+)NCBICelera
Cytogenetic Map6F1NCBI
NANOG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,787,794 - 7,799,146 (+)EnsemblGRCh38hg38GRCh38
GRCh38127,789,402 - 7,799,146 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,941,998 - 7,951,742 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,833,262 - 7,839,922 (+)NCBINCBI36hg18NCBI36
Build 34127,833,261 - 7,839,922NCBI
Celera129,520,085 - 9,526,744 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef127,755,619 - 7,762,294 (+)NCBIHuRef
CHM1_1127,941,300 - 7,947,963 (+)NCBICHM1_1
Nanog
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,943,737 - 155,951,116 (+)NCBI
Rnor_6.0 Ensembl4155,531,906 - 155,539,268 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04155,531,906 - 155,539,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04222,552,995 - 222,560,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,190,786 - 159,198,160 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14159,438,699 - 159,441,754 (+)NCBI
Celera4144,763,722 - 144,771,060 (+)NCBICelera
Cytogenetic Map4q42NCBI
Nanog
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554136,561,323 - 6,565,770 (+)NCBIChiLan1.0ChiLan1.0
NANOG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1128,070,877 - 8,077,556 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0127,913,037 - 7,919,715 (+)NCBIMhudiblu_PPA_v0panPan3
NANOG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,262,558 - 37,266,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,348,312 - 9,354,207 (-)NCBI
ROS_Cfam_1.02737,614,640 - 37,620,732 (+)NCBI
UMICH_Zoey_3.12737,494,510 - 37,500,598 (+)NCBI
UNSW_CanFamBas_1.02737,530,317 - 37,536,638 (+)NCBI
UU_Cfam_GSD_1.0278,831,817 - 8,837,819 (-)NCBI
Nanog
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_02440494598,997,260 - 99,003,117 (+)NCBI
SpeTri2.0NW_004936892181,834 - 187,691 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NANOG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,932,382 - 62,939,082 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,931,642 - 62,939,086 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,798,046 - 65,843,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NANOG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,813,309 - 7,820,009 (+)NCBI
Nanog
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248605,026,203 - 5,037,219 (+)NCBI

Position Markers
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X87,127,902 - 87,128,112UniSTSGRCm37
MGSCv376122,664,190 - 122,664,398UniSTSGRCm37
Celera7106,477,520 - 106,477,778UniSTS
Cytogenetic Map6F2UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
Enk-pending  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F2UniSTS
cM Map6 UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera7106,477,527 - 106,477,765UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map7E3UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F2UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F2UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386122,714,172 - 122,714,380UniSTSGRCm38
GRCm38X89,882,563 - 89,882,773UniSTSGRCm38
MGSCv37X87,127,902 - 87,128,112UniSTSGRCm37
MGSCv376122,664,190 - 122,664,398UniSTSGRCm37
Celera7106,478,972 - 106,479,183UniSTS
Celera6124,514,704 - 124,514,912UniSTS
Cytogenetic Map6F2UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F2UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera7106,477,585 - 106,477,948UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map7E3UniSTS
Nanog  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6F2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110838217144838360Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111165485145165578Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112269957125356785Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112269957147052561Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114368732145656013Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115242853146429238Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115569842149572401Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115569842149572401Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115569842149572401Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115601042149601187Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115717516132601187Mouse
4141064Ath37_matherosclerosis 37 (mouse)Not determined6116664897128519025Mouse
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116852888149736546Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117082986149736546Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120439808149736546Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir134mmu-miR-134-5pTarbaseexternal_infoOtherPOSITIVE
Mir134mmu-miR-134-3pMirecordsexternal_info{unchanged}NA17916804
Mir470mmu-miR-470-5pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assay//Western blotFunctional MTI18806776
Mir296mmu-miR-296-5pMirtarbaseexternal_infoqRT-PCR//Luciferase reporter assay//Western blotFunctional MTI18806776

Predicted Target Of
Summary Value
Count of predictions:846
Count of miRNA genes:251
Interacting mature miRNAs:261
Transcripts:ENSMUST00000012540, ENSMUST00000112580, ENSMUST00000112581
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB126939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC131715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF507043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY278951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY455282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY455285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC132017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC144996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY382803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ860376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ358089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ358090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ358096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000012540   ⟹   ENSMUSP00000012540
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6122,707,568 - 122,714,633 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112580   ⟹   ENSMUSP00000108199
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6122,707,565 - 122,714,633 (+)Ensembl
RefSeq Acc Id: ENSMUST00000112581   ⟹   ENSMUSP00000108200
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6122,707,489 - 122,714,633 (+)Ensembl
RefSeq Acc Id: NM_001289828   ⟹   NP_001276757
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,684,524 - 122,691,592 (+)NCBI
GRCm386122,707,565 - 122,714,633 (+)NCBI
Celera6124,507,713 - 124,515,165 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289830   ⟹   NP_001276759
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,684,524 - 122,691,592 (+)NCBI
GRCm386122,707,565 - 122,714,633 (+)NCBI
Celera6124,507,713 - 124,515,165 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289831   ⟹   NP_001276760
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,684,448 - 122,691,592 (+)NCBI
GRCm386122,707,489 - 122,714,633 (+)NCBI
Celera6124,507,713 - 124,515,165 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028016   ⟹   NP_082292
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396122,684,524 - 122,691,592 (+)NCBI
GRCm386122,707,565 - 122,714,633 (+)NCBI
MGSCv376122,657,586 - 122,663,796 (+)RGD
Celera6124,507,713 - 124,515,165 (+)NCBI
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_082292   ⟸   NM_028016
- Peptide Label: isoform 1
- UniProtKB: Q80Z64 (UniProtKB/Swiss-Prot),   A2RS90 (UniProtKB/TrEMBL),   B7ZN41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276760   ⟸   NM_001289831
- Peptide Label: isoform 3
- UniProtKB: Q80Z64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276757   ⟸   NM_001289828
- Peptide Label: isoform 2
- UniProtKB: Q80Z64 (UniProtKB/Swiss-Prot),   B7ZN41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276759   ⟸   NM_001289830
- Peptide Label: isoform 3
- UniProtKB: Q80Z64 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000012540   ⟸   ENSMUST00000012540
RefSeq Acc Id: ENSMUSP00000108200   ⟸   ENSMUST00000112581
RefSeq Acc Id: ENSMUSP00000108199   ⟸   ENSMUST00000112580
Protein Domains
Homeobox

Promoters
RGD ID:6839700
Promoter ID:MM_KWN:47489
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000012540,   ENSMUST00000112580,   ENSMUST00000112581,   ENSMUST00000112582,   UC009DPP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366122,657,446 - 122,657,946 (+)MPROMDB
RGD ID:6890918
Promoter ID:EPDNEW_M8910
Type:multiple initiation site
Name:Nanog_1
Description:Mus musculus Nanog homeobox , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386122,707,595 - 122,707,655EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919200 AgrOrtholog
Ensembl Genes ENSMUSG00000012396 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000012540 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108199 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000108200 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000012540 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112580 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000112581 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:71950 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919200 ENTREZGENE
NCBI Gene 71950 ENTREZGENE
Pfam Homeodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nanog PhenoGen
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2RS90 ENTREZGENE, UniProtKB/TrEMBL
  B7ZN41 ENTREZGENE, UniProtKB/TrEMBL
  NANOG_MOUSE UniProtKB/Swiss-Prot
  Q5TM83 ENTREZGENE
  Q80Z64 ENTREZGENE
UniProt Secondary Q6SMR1 UniProtKB/Swiss-Prot
  Q7TN85 UniProtKB/Swiss-Prot