Brd7 (bromodomain containing 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Brd7 (bromodomain containing 7) Chinchilla lanigera
Analyze
Symbol: Brd7
Name: bromodomain containing 7
RGD ID: 8877860
Description: ENCODES a protein that exhibits histone binding (ortholog); lysine-acetylated histone binding (ortholog); p53 binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); colorectal carcinoma (ortholog); glioblastoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: bromodomain-containing protein 7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,424,949 - 8,461,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554338,425,976 - 8,462,431 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Brd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554338,424,949 - 8,461,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554338,425,976 - 8,462,431 (-)NCBIChiLan1.0ChiLan1.0
BRD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381650,315,957 - 50,368,988 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1650,313,487 - 50,368,988 (-)EnsemblGRCh38hg38GRCh38
GRCh371650,349,868 - 50,402,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361648,910,442 - 48,960,330 (-)NCBINCBI36hg18NCBI36
Build 341648,910,441 - 48,960,330NCBI
Celera1634,867,347 - 34,917,271 (-)NCBI
Cytogenetic Map16q12.1NCBI
HuRef1636,240,844 - 36,290,809 (-)NCBIHuRef
CHM1_11651,760,032 - 51,809,939 (-)NCBICHM1_1
T2T-CHM13v2.01656,113,791 - 56,166,835 (-)NCBI
Brd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39889,056,522 - 89,089,249 (-)NCBIGRCm39mm39
GRCm39 Ensembl889,057,667 - 89,088,822 (-)Ensembl
GRCm38888,329,894 - 88,362,252 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl888,331,039 - 88,362,194 (-)EnsemblGRCm38mm10GRCm38
MGSCv37890,856,210 - 90,886,090 (-)NCBIGRCm37mm9NCBIm37
MGSCv36891,222,416 - 91,252,261 (-)NCBImm8
MGSCv36888,068,281 - 88,097,933 (-)NCBImm8
Celera892,606,276 - 92,636,084 (-)NCBICelera
Cytogenetic Map8C3NCBI
Brd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21918,708,792 - 18,737,500 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1918,709,022 - 18,737,494 (+)Ensembl
Rnor_6.01919,672,780 - 19,701,484 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1919,672,856 - 19,701,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01930,698,139 - 30,726,814 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41920,019,637 - 20,048,264 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11920,021,019 - 20,053,087 (+)NCBI
Celera1918,594,033 - 18,622,660 (+)NCBICelera
Cytogenetic Map19p11NCBI
BRD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11649,462,040 - 49,510,825 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,463,048 - 49,514,386 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01630,576,449 - 30,630,409 (-)NCBIMhudiblu_PPA_v0panPan3
BRD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1264,966,636 - 65,002,800 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl264,966,392 - 65,002,799 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,538,574 - 61,580,817 (+)NCBI
ROS_Cfam_1.0265,511,076 - 65,553,367 (+)NCBI
ROS_Cfam_1.0 Ensembl265,511,161 - 65,551,740 (+)Ensembl
UMICH_Zoey_3.1262,334,601 - 62,376,839 (+)NCBI
UNSW_CanFamBas_1.0263,354,209 - 63,396,511 (+)NCBI
UU_Cfam_GSD_1.0264,242,470 - 64,284,777 (+)NCBI
Brd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934956,156,077 - 56,194,652 (+)NCBI
SpeTri2.0NW_0049364753,394,423 - 3,432,998 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl634,478,012 - 34,519,664 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1634,478,008 - 34,519,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BRD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1536,114,951 - 36,168,786 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl536,112,289 - 36,168,728 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604740,334,506 - 40,388,517 (+)NCBIVero_WHO_p1.0
Brd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247576,294,559 - 6,335,401 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011734   ⟹   ENSCLAP00000011597
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554338,424,949 - 8,461,802 (-)Ensembl
RefSeq Acc Id: XM_013516217   ⟹   XP_013371671
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554338,425,976 - 8,462,431 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371671 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013371671   ⟸   XM_013516217
- Sequence:
RefSeq Acc Id: ENSCLAP00000011597   ⟸   ENSCLAT00000011734
Protein Domains
Bromo


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007993 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000011597 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011734 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  DUF3512 UniProtKB/TrEMBL
NCBI Gene Brd7 ENTREZGENE
Pfam Bromodomain UniProtKB/TrEMBL
  DUF3512 UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/TrEMBL
UniProt A0A8C2VBJ4_CHILA UniProtKB/TrEMBL