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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal limb bud morphology
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Accession:MP:0005650 term browser browse the term
Definition:any structural anomaly of the mesenchymal outgrowth on the lateral trunk of the embryo that develops into the limbs


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abnormal limb bud morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg10b ALG10 alpha-1,2-glucosyltransferase IEA MGI NCBI chr15:90,108,506...90,117,674
Ensembl chr15:90,108,514...90,117,674 		JBrowse link
G Arid3a AT-rich interaction domain 3A IEA MGI NCBI chr10:79,762,877...79,790,852
Ensembl chr10:79,762,877...79,790,852 		JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 IEA MGI NCBI chr19:44,127,685...44,134,909
Ensembl chr19:44,127,685...44,134,885 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:10195895 PMID:10346820 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Cox7c cytochrome c oxidase subunit 7C IEA MGI NCBI chr13:86,192,917...86,194,914
Ensembl chr13:86,192,935...86,195,023 		JBrowse link
G Csnk2a1 casein kinase 2, alpha 1 polypeptide IAGP MGI PMID:17954558 NCBI chr 2:152,068,468...152,123,772
Ensembl chr 2:152,068,759...152,123,772 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 IAGP MGI PMID:28263186 NCBI chr 2:130,495,955...130,506,549
Ensembl chr 2:130,495,880...130,506,579 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 IAGP MGI PMID:11702953 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 IEA MGI NCBI chr 4:141,487,498...141,518,255
Ensembl chr 4:141,487,500...141,518,242 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 IAGP MGI PMID:28379358 NCBI chr 2:29,921,563...29,938,891
Ensembl chr 2:29,921,558...29,938,893 		JBrowse link
G Etv4 ets variant 4 IAGP MGI PMID:19386269 NCBI chr11:101,660,573...101,677,963
Ensembl chr11:101,660,568...101,676,197 		JBrowse link
G Etv5 ets variant 5 IAGP MGI PMID:19386269 NCBI chr16:22,200,063...22,258,320
Ensembl chr16:22,200,059...22,258,469 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:9916808 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:16308330 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:12399319 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist IAGP MGI PMID:2612902 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:17164415 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 IAGP MGI PMID:20737509 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19211672 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:12701101 PMID:17166921 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Intu inturned planar cell polarity protein IAGP MGI PMID:20067783 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:4305644 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Kif3a kinesin family member 3A IAGP MGI PMID:17166921 NCBI chr11:53,456,531...53,495,075
Ensembl chr11:53,458,206...53,492,794 		JBrowse link
G Kif7 kinesin family member 7 IAGP MGI PMID:19592253 NCBI chr 7:79,347,846...79,365,520
Ensembl chr 7:79,347,846...79,365,468 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IAGP MGI PMID:10090727 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Lipt2 lipoyl(octanoyl) transferase 2 (putative) IEA MGI NCBI chr 7:99,808,484...99,810,138
Ensembl chr 7:99,808,484...99,810,572 		JBrowse link
G Lrp1 low density lipoprotein receptor-related protein 1 IEA MGI NCBI chr10:127,374,026...127,457,158
Ensembl chr10:127,374,030...127,457,017 		JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 IAGP MGI PMID:2090433 NCBI chr12:66,512,832...67,269,323
Ensembl chr12:66,512,834...67,269,323 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:8404543 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Myo18a myosin XVIIIA IEA MGI NCBI chr11:77,654,066...77,756,806
Ensembl chr11:77,654,072...77,756,806 		JBrowse link
G Nog noggin IAGP MGI PMID:16598734 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 IAGP MGI PMID:11566859 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 IEA MGI NCBI chr19:17,409,678...17,815,076
Ensembl chr19:17,409,683...17,814,996 		JBrowse link
G Piezo1 piezo-type mechanosensitive ion channel component 1 IEA MGI NCBI chr 8:123,208,437...123,278,068
Ensembl chr 8:123,208,437...123,278,068 		JBrowse link
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q IEA MGI NCBI chr17:26,145,398...26,161,855
Ensembl chr17:26,145,395...26,163,910 		JBrowse link
G Rab34 RAB34, member RAS oncogene family IEA MGI NCBI chr11:78,079,253...78,083,019
Ensembl chr11:78,079,256...78,083,019 		JBrowse link
G Rad51d RAD51 paralog D IAGP MGI PMID:10705376 NCBI chr11:82,762,786...82,781,571
Ensembl chr11:82,767,260...82,781,440 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs IAGP MGI PMID:23213437 NCBI chr 4:43,875,521...43,944,806
Ensembl chr 4:43,875,530...43,944,806 		JBrowse link
G Rexo1 REX1, RNA exonuclease 1 IEA MGI NCBI chr10:80,376,759...80,400,624
Ensembl chr10:80,376,756...80,397,394 		JBrowse link
G Rpgrip1l Rpgrip1-like IAGP MGI PMID:17553904 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Sfn stratifin IAGP MGI PMID:6746880 NCBI chr 4:133,327,867...133,329,163
Ensembl chr 4:133,327,867...133,329,479 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17222543 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 IAGP MGI PMID:12414734 NCBI chr11:112,673,036...112,678,583
Ensembl chr11:112,673,050...112,678,586 		JBrowse link
G St14 suppression of tumorigenicity 14 (colon carcinoma) IEA MGI NCBI chr 9:30,999,886...31,043,138
Ensembl chr 9:31,000,698...31,043,149 		JBrowse link
G Stip1 stress-induced phosphoprotein 1 IAGP MGI PMID:23729591 NCBI chr19:6,998,064...7,017,394
Ensembl chr19:6,998,070...7,017,335 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling IEA MGI NCBI chr19:46,385,335...46,477,243
Ensembl chr19:46,385,335...46,477,243 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:2658196 PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx15 T-box 15 IAGP MGI PMID:15652702 NCBI chr 3:99,147,671...99,261,576
Ensembl chr 3:99,147,697...99,261,575 		JBrowse link
G Tbx4 T-box 4 IAGP MGI PMID:17164415 NCBI chr11:85,777,193...85,806,923
Ensembl chr11:85,777,248...85,806,923 		JBrowse link
G Tcf7 transcription factor 7, T cell specific IAGP MGI PMID:10090727 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 (T cell specific, HMG box) IAGP MGI PMID:22573616 NCBI chr 6:72,603,354...72,766,028
Ensembl chr 6:72,603,361...72,766,237 		JBrowse link
G Tenm4 teneurin transmembrane protein 4 IAGP MGI PMID:15489520 NCBI chr 7:95,550,262...96,560,300
Ensembl chr 7:95,820,453...96,560,300 		JBrowse link
G Tmem132a transmembrane protein 132A IEA MGI NCBI chr19:10,835,193...10,847,569
Ensembl chr19:10,835,186...10,847,304 		JBrowse link
G Togaram1 TOG array regulator of axonemal microtubules 1 IEA MGI NCBI chr12:65,012,350...65,069,347
Ensembl chr12:65,012,578...65,069,347 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:10227294 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Tyr tyrosinase IAGP MGI PMID:15489520 NCBI chr 7:87,073,979...87,142,637
Ensembl chr 7:87,073,979...87,142,720 		JBrowse link
G Ube2f ubiquitin-conjugating enzyme E2F (putative) IEA MGI NCBI chr 1:91,177,412...91,214,243
Ensembl chr 1:91,178,026...91,218,059 		JBrowse link
G Uqcc3 ubiquinol-cytochrome c reductase complex assembly factor 3 IEA MGI NCBI chr19:8,857,378...8,858,297
Ensembl chr19:8,857,378...8,858,287 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor IAGP MGI PMID:9651579 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594 		JBrowse link
abnormal apical ectodermal ridge morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:17194222 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:17194222 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:8792608 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:10195896 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:12569130 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 IAGP MGI PMID:28379358 NCBI chr 2:29,921,563...29,938,891
Ensembl chr 2:29,921,558...29,938,893 		JBrowse link
G En1 engrailed 1 IAGP MGI PMID:8684466 PMID:9362463 PMID:19479951 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G Fbxw4 F-box and WD-40 domain protein 4 IAGP MGI PMID:9733575 NCBI chr19:45,566,693...45,648,954
Ensembl chr19:45,566,693...45,648,751 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:16120640 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:11180951 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fuz fuzzy planar cell polarity protein IAGP MGI PMID:19877275 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist IAGP MGI PMID:15201225 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19211672 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Itga3 integrin alpha 3 IAGP MGI PMID:10433923 NCBI chr11:94,935,301...94,967,637
Ensembl chr11:94,935,300...94,967,627 		JBrowse link
G Itga6 integrin alpha 6 IAGP MGI PMID:10433923 NCBI chr 2:71,617,236...71,688,761
Ensembl chr 2:71,575,960...71,688,760 		JBrowse link
G Jag2 jagged 2 IEA MGI NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Lrp4 low density lipoprotein receptor-related protein 4 IAGP MGI PMID:17119023 NCBI chr 2:91,287,794...91,344,246
Ensembl chr 2:91,287,856...91,344,124 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:15930102 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:15930102 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:8404543 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:9882503 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279 		JBrowse link
G Prrx2 paired related homeobox 2 IAGP MGI PMID:9882503 NCBI chr 2:30,735,076...30,771,263
Ensembl chr 2:30,724,984...30,771,263 		JBrowse link
G Reck reversion-inducing-cysteine-rich protein with kazal motifs IAGP MGI PMID:23213437 NCBI chr 4:43,875,521...43,944,806
Ensembl chr 4:43,875,530...43,944,806 		JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IAGP MGI PMID:19479951 NCBI chr11:120,671,571...120,675,077
Ensembl chr11:120,671,572...120,675,033 		JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:17904116 PMID:18067586 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222 		JBrowse link
G Sfn stratifin IAGP MGI PMID:6746880 NCBI chr 4:133,327,867...133,329,163
Ensembl chr 4:133,327,867...133,329,479 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IAGP MGI PMID:16192310 NCBI chr 9:21,527,377...21,615,526
Ensembl chr 9:21,527,465...21,615,526 		JBrowse link
G Sp8 trans-acting transcription factor 8 IAGP MGI PMID:14597661 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:18326838 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Wls wntless WNT ligand secretion mediator IAGP MGI PMID:22377357 NCBI chr 3:159,545,287...159,644,302
Ensembl chr 3:159,545,309...159,644,300 		JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 IAGP MGI PMID:12569130 NCBI chr11:103,665,000...103,708,854
Ensembl chr11:103,664,976...103,708,783 		JBrowse link
abnormal forelimb bud morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:16120640 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:25034710 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:10804186 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 IAGP MGI PMID:21462293 NCBI chr12:9,624,442...9,631,500
Ensembl chr12:9,620,116...9,631,500 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Sp8 trans-acting transcription factor 8 IAGP MGI PMID:14597661 NCBI chr12:118,809,968...118,816,313
Ensembl chr12:118,810,064...118,816,311 		JBrowse link
G T brachyury, T-box transcription factor T IEA MGI NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx5 T-box 5 IAGP MGI PMID:12736217 NCBI chr 5:119,934,581...120,023,285
Ensembl chr 5:119,970,733...120,023,284 		JBrowse link
G Vcl vinculin IAGP MGI PMID:9486805 NCBI chr14:20,979,436...21,083,744
Ensembl chr14:20,979,466...21,083,744 		JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:8602242 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295 		JBrowse link
abnormal hindlimb bud morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:23028455 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A IAGP MGI PMID:16556916 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Gdf11 growth differentiation factor 11 IAGP MGI PMID:12546816 NCBI chr10:128,716,393...128,727,587
Ensembl chr10:128,718,164...128,727,587 		JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:16556916 PMID:22438573 PMID:23028455 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225 		JBrowse link
G Sall4 spalt like transcription factor 4 IAGP MGI PMID:16380715 NCBI chr 2:168,590,252...168,609,121
Ensembl chr 2:168,590,252...168,609,863 		JBrowse link
abnormal limb mesenchyme morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 2700049A03Rik RIKEN cDNA 2700049A03 gene IAGP MGI PMID:21750036 NCBI chr12:71,183,627...71,356,273
Ensembl chr12:71,183,622...71,290,077 		JBrowse link
G Ddrgk1 DDRGK domain containing 1 IAGP MGI PMID:28263186 NCBI chr 2:130,495,955...130,506,549
Ensembl chr 2:130,495,880...130,506,579 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 IAGP MGI PMID:28379358 NCBI chr 2:29,921,563...29,938,891
Ensembl chr 2:29,921,558...29,938,893 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:12399319 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Gdf5 growth differentiation factor 5 IAGP MGI PMID:8145850 NCBI chr 2:155,782,943...155,787,204
Ensembl chr 2:155,782,943...155,787,287 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist IAGP MGI PMID:15201225 NCBI chr 2:113,579,020...113,588,993
Ensembl chr 2:113,576,509...113,588,991 		JBrowse link
G Has2 hyaluronan synthase 2 IAGP MGI PMID:23313125 NCBI chr15:56,529,023...56,557,942
Ensembl chr15:56,529,023...56,557,935 		JBrowse link
G Ofd1 OFD1, centriole and centriolar satellite protein IAGP MGI PMID:20920500 NCBI chr  X:165,171,503...165,223,704
Ensembl chr  X:165,173,029...165,223,700 		JBrowse link
G P4ha1 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide IAGP MGI PMID:17135260 NCBI chr10:59,159,019...59,209,126
Ensembl chr10:59,159,118...59,209,126 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:20596238 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sox12 SRY (sex determining region Y)-box 12 IAGP MGI PMID:20596238 NCBI chr 2:152,235,531...152,239,966
Ensembl chr 2:152,235,531...152,239,983 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 IAGP MGI PMID:20596238 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
G Tctn2 tectonic family member 2 IAGP MGI PMID:21725307 NCBI chr 5:124,736,812...124,765,803
Ensembl chr 5:124,736,812...124,765,803 		JBrowse link
G Wdr19 WD repeat domain 19 IAGP MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
abnormal zone of polarizing activity morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 aristaless-like homeobox 4 IAGP MGI PMID:9374397 NCBI chr 2:93,472,779...93,511,686
Ensembl chr 2:93,472,729...93,511,684 		JBrowse link
G Is(In8B2-8B3.1;6C1)1Tshir Insertion, Chr8 B2-B3.1 into Chr 6C1, Toshihiko Shiroishi 1 IAGP MGI PMID:7628698
absent apical ectodermal ridge term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxw4 F-box and WD-40 domain protein 4 IAGP MGI PMID:9733575 NCBI chr19:45,566,693...45,648,954
Ensembl chr19:45,566,693...45,648,751 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:20503384 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Gpr161 G protein-coupled receptor 161 IAGP MGI PMID:23332756 NCBI chr 1:165,108,760...165,154,314
Ensembl chr 1:165,123,358...165,154,314 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IAGP MGI PMID:10090727 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 IAGP MGI PMID:11029008 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
G Tbx5 T-box 5 IAGP MGI PMID:12736217 NCBI chr 5:119,934,581...120,023,285
Ensembl chr 5:119,970,733...120,023,284 		JBrowse link
G Tcf7 transcription factor 7, T cell specific IAGP MGI PMID:10090727 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:10227293 PMID:10227294 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
absent forelimb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Cpox coproporphyrinogen oxidase IAGP MGI PMID:28600349 NCBI chr16:58,490,571...58,500,754
Ensembl chr16:58,490,655...58,537,999 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
G Tbx5 T-box 5 IAGP MGI PMID:12736217 NCBI chr 5:119,934,581...120,023,285
Ensembl chr 5:119,970,733...120,023,284 		JBrowse link
absent hindlimb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:10192400 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Cdx2 caudal type homeobox 2 IAGP MGI PMID:19906845 NCBI chr 5:147,237,710...147,244,059
Ensembl chr 5:147,237,615...147,244,080 		JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157 		JBrowse link
G Rbl2 RB transcriptional corepressor like 2 IAGP MGI PMID:9806916 NCBI chr 8:91,796,685...91,850,472
Ensembl chr 8:91,796,685...91,850,472 		JBrowse link
G Sirt1 sirtuin 1 IAGP MGI PMID:18835033 NCBI chr10:63,154,784...63,174,814
Ensembl chr10:63,154,784...63,217,483 		JBrowse link
G T brachyury, T-box transcription factor T IAGP MGI PMID:5906493 NCBI chr17:8,653,255...8,661,328
Ensembl chr17:8,653,255...8,661,328 		JBrowse link
absent limb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elp1 elongator complex protein 1 IAGP MGI PMID:19015235 NCBI chr 4:56,746,547...56,802,565
Ensembl chr 4:56,749,680...56,802,331 		JBrowse link
G Eps15 epidermal growth factor receptor pathway substrate 15 IAGP MGI PMID:30692166 NCBI chr 4:109,137,372...109,245,014
Ensembl chr 4:109,137,465...109,245,014 		JBrowse link
G Eps15l1 epidermal growth factor receptor pathway substrate 15-like 1 IAGP MGI PMID:30692166 NCBI chr 8:73,094,834...73,175,410
Ensembl chr 8:73,094,839...73,175,304 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:9784490 PMID:21559415 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:8001823 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:9435295 PMID:12756187 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Fn1 fibronectin 1 IAGP MGI PMID:17591922 NCBI chr 1:71,624,632...71,692,439
Ensembl chr 1:71,624,679...71,692,359 		JBrowse link
G Hacd2 3-hydroxyacyl-CoA dehydratase 2 IAGP MGI PMID:36693621 NCBI chr16:34,842,791...34,929,560
Ensembl chr16:34,842,798...34,929,547 		JBrowse link
G Hus1 HUS1 checkpoint clamp component IAGP MGI PMID:10921903 NCBI chr11:8,943,137...8,961,240
Ensembl chr11:8,943,137...8,961,191 		JBrowse link
G Nf1 neurofibromin 1 IAGP MGI PMID:7477259 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438 		JBrowse link
G Rasa1 RAS p21 protein activator 1 IAGP MGI PMID:7477259 NCBI chr13:85,362,893...85,437,487
Ensembl chr13:85,362,899...85,437,249 		JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:20596238 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573 		JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 IAGP MGI PMID:20596238 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696 		JBrowse link
broad limb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs7 Bardet-Biedl syndrome 7 IAGP MGI PMID:22228099 NCBI chr 3:36,627,291...36,667,639
Ensembl chr 3:36,627,291...36,667,626 		JBrowse link
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:17194222 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:17194222 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126 		JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:8792608 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114 		JBrowse link
G Chuk conserved helix-loop-helix ubiquitous kinase IAGP MGI PMID:10898787 NCBI chr19:44,061,773...44,095,940
Ensembl chr19:44,061,774...44,095,919 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734 		JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:10804177 PMID:22228099 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Ikbkb inhibitor of kappaB kinase beta IAGP MGI PMID:10898787 NCBI chr 8:23,149,228...23,196,605
Ensembl chr 8:23,149,228...23,196,605 		JBrowse link
G Intu inturned planar cell polarity protein IAGP MGI PMID:20067783 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Rpgrip1l Rpgrip1-like IAGP MGI PMID:17553904 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:9636176 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Tmem107 transmembrane protein 107 IAGP MGI PMID:22698544 NCBI chr11:68,961,635...68,964,119
Ensembl chr11:68,961,632...68,964,119 		JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:10898787 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447 		JBrowse link
small forelimb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:10804186 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 IAGP MGI PMID:10090727 NCBI chr 3:130,903,972...131,018,006
Ensembl chr 3:130,904,120...131,018,005 		JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21930923 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Tcf7 transcription factor 7, T cell specific IAGP MGI PMID:10090727 NCBI chr11:52,137,347...52,174,211
Ensembl chr11:52,143,198...52,174,158 		JBrowse link
G Tmem132a transmembrane protein 132A IAGP MGI PMID:39385148 NCBI chr19:10,835,193...10,847,569
Ensembl chr19:10,835,186...10,847,304 		JBrowse link
G Vcl vinculin IAGP MGI PMID:9486805 NCBI chr14:20,979,436...21,083,744
Ensembl chr14:20,979,466...21,083,744 		JBrowse link
small hindlimb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A IAGP MGI PMID:16556916 NCBI chr14:34,133,018...34,225,335
Ensembl chr14:34,132,691...34,225,298 		JBrowse link
G Ccnf cyclin F IAGP MGI PMID:14993286 NCBI chr17:24,441,518...24,470,333
Ensembl chr17:24,441,172...24,470,458 		JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:16556916 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225 		JBrowse link
G Pitx1 paired-like homeodomain transcription factor 1 IAGP MGI PMID:12441290 NCBI chr13:55,972,857...55,984,002
Ensembl chr13:55,972,864...55,984,005 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:12441290 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Tbx3 T-box 3 IAGP MGI PMID:12668638 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Tbx4 T-box 4 IAGP MGI PMID:12736212 NCBI chr11:85,777,193...85,806,923
Ensembl chr11:85,777,248...85,806,923 		JBrowse link
G Tmem132a transmembrane protein 132A IAGP MGI PMID:39385148 NCBI chr19:10,835,193...10,847,569
Ensembl chr19:10,835,186...10,847,304 		JBrowse link
small limb buds term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edil3 EGF-like repeats and discoidin I-like domains 3 IAGP MGI PMID:19307312 NCBI chr13:88,969,591...89,471,344
Ensembl chr13:88,969,591...89,471,342 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IAGP MGI PMID:19307312 NCBI chr 8:4,334,781...4,375,104
Ensembl chr 8:4,335,382...4,375,413 		JBrowse link
G Fbxl19 F-box and leucine-rich repeat protein 19 IAGP MGI PMID:29809150 NCBI chr 7:127,343,059...127,368,655
Ensembl chr 7:127,343,715...127,368,655 		JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:11101846 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Katnb1 katanin p80 (WD40-containing) subunit B 1 IAGP MGI PMID:25521379 NCBI chr 8:95,807,804...95,826,502
Ensembl chr 8:95,807,814...95,829,777 		JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:15930102 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927 		JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:15930102 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110 		JBrowse link
G Nog noggin IAGP MGI PMID:16598734 NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158 		JBrowse link
G Pitx1 paired-like homeodomain transcription factor 1 IAGP MGI PMID:12441290 NCBI chr13:55,972,857...55,984,002
Ensembl chr13:55,972,864...55,984,005 		JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:12441290 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240 		JBrowse link
G Sfn stratifin IAGP MGI PMID:6746880 NCBI chr 4:133,327,867...133,329,163
Ensembl chr 4:133,327,867...133,329,479 		JBrowse link
G Trp63 transformation related protein 63 IAGP MGI PMID:10227293 PMID:10227294 PMID:18326838 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
thick apical ectodermal ridge term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 IAGP MGI PMID:11702953 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Jag2 jagged 2 IAGP MGI PMID:4305644 PMID:9531541 NCBI chr12:112,871,439...112,893,437
Ensembl chr12:112,871,439...112,893,396 		JBrowse link
G Lrp4 low density lipoprotein receptor-related protein 4 IAGP MGI PMID:16207730 NCBI chr 2:91,287,794...91,344,246
Ensembl chr 2:91,287,856...91,344,124 		JBrowse link
thin apical ectodermal ridge term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed 1 IAGP MGI PMID:8684466 NCBI chr 1:120,530,246...120,535,719
Ensembl chr 1:120,530,147...120,535,721 		JBrowse link
G Fbxw4 F-box and WD-40 domain protein 4 IAGP MGI PMID:9733575 NCBI chr19:45,566,693...45,648,954
Ensembl chr19:45,566,693...45,648,751 		JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:12399319 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179 		JBrowse link
G Tbx3 T-box 3 IAGP MGI PMID:12668638 NCBI chr 5:119,808,600...119,822,789
Ensembl chr 5:119,808,734...119,822,789 		JBrowse link
G Wls wntless WNT ligand secretion mediator IAGP MGI PMID:22377357 NCBI chr 3:159,545,287...159,644,302
Ensembl chr 3:159,545,309...159,644,300 		JBrowse link
G Wnt3 wingless-type MMTV integration site family, member 3 IAGP MGI PMID:12569130 NCBI chr11:103,665,000...103,708,854
Ensembl chr11:103,664,976...103,708,783 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17088
    limbs/digits/tail phenotype 1550
      abnormal limb morphology 1265
        abnormal limb development 197
          abnormal limb bud morphology 133
            abnormal apical ectodermal ridge morphology + 40
            abnormal forelimb bud morphology + 16
            abnormal hindlimb bud morphology + 18
            abnormal limb mesenchyme morphology 14
            abnormal zone of polarizing activity morphology 2
            absent limb buds + 21
            broad limb buds 13
            small limb buds + 25
paths to the root