Arid3a (AT-rich interaction domain 3A) - Rat Genome Database

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Gene: Arid3a (AT-rich interaction domain 3A) Mus musculus
Analyze
Symbol: Arid3a
Name: AT-rich interaction domain 3A (Ensembl:AT rich interactive domain 3A (BRIGHT-like))
RGD ID: 1313246
MGI Page MGI
Description: Enables several functions, including chromatin binding activity; identical protein binding activity; and transcription coregulator activity. Involved in positive regulation of transcription by RNA polymerase II. Acts upstream of or within regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and immune system. Orthologous to human ARID3A (AT-rich interaction domain 3A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ARID domain-containing protein 3A; AT rich interactive domain 3A (Bright like); AT rich interactive domain 3A (BRIGHT-like); AT-rich interactive domain-containing protein 3A; B-cell regulator of IgH transcription; Brig; Bright; dead ringer homolog 1; dead ringer-like protein 1; Dr; Dri1; Dril1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,762,877 - 79,790,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,762,877 - 79,790,852 (+)EnsemblGRCm39 Ensembl
GRCm381079,927,043 - 79,955,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,927,043 - 79,955,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,389,817 - 79,417,757 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,330,201 - 79,358,141 (+)NCBIMGSCv36mm8
Celera1080,941,882 - 80,969,819 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
membrane raft  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell differentiation  (IAGP)
abnormal cell physiology  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal common lymphocyte progenitor cell morphology  (IAGP)
abnormal embryo size  (IEA)
abnormal embryonic erythropoiesis  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal hematopoietic stem cell morphology  (IAGP)
abnormal lens morphology  (IEA)
abnormal limb bud morphology  (IEA)
abnormal placenta morphology  (IEA)
decreased B cell number  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased B-1a cell number  (IAGP)
decreased B-2 B cell number  (IAGP)
decreased body size  (IAGP)
decreased common myeloid progenitor cell number  (IAGP)
decreased erythrocyte cell number  (IEA)
decreased erythroid progenitor cell number  (IAGP)
decreased hematocrit  (IEA)
decreased hematopoietic stem cell number  (IAGP)
decreased hemoglobin content  (IEA)
decreased IgG1 level  (IAGP)
decreased IgM level  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased transitional stage B cell number  (IAGP)
decreased transitional stage T1 B cell number  (IAGP)
decreased transitional stage T2 B cell number  (IAGP)
embryonic lethality during organogenesis, incomplete penetrance  (IAGP)
hemorrhage  (IEA)
increased circulating insulin level  (IEA)
increased circulating triglyceride level  (IEA)
increased mean corpuscular hemoglobin  (IEA)
lethality, incomplete penetrance  (IAGP)
liver hypoplasia  (IAGP)
no abnormal phenotype detected  (IAGP)
pale yolk sac  (IAGP)
pallor  (IAGP)
preweaning lethality, complete penetrance  (IEA)
thin myocardium compact layer  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8543152   PMID:9722953   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12193717   PMID:12466851   PMID:12477932   PMID:15456761   PMID:15743806   PMID:15747579  
PMID:15922553   PMID:16141072   PMID:16141073   PMID:16507996   PMID:17093407   PMID:18287559   PMID:18583319   PMID:18981111   PMID:19214191   PMID:20059953   PMID:20412781   PMID:20680960  
PMID:21199920   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21955986   PMID:21963220   PMID:22174793   PMID:22988430   PMID:23630078   PMID:24146773   PMID:24194600   PMID:25319825  
PMID:25535283   PMID:25753579   PMID:26438731   PMID:27626380   PMID:27965054   PMID:29114251   PMID:29462197   PMID:30196744   PMID:30930899   PMID:35441443   PMID:36050343   PMID:37659731  


Genomics

Comparative Map Data
Arid3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391079,762,877 - 79,790,852 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1079,762,877 - 79,790,852 (+)EnsemblGRCm39 Ensembl
GRCm381079,927,043 - 79,955,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1079,927,043 - 79,955,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv371079,389,817 - 79,417,757 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361079,330,201 - 79,358,141 (+)NCBIMGSCv36mm8
Celera1080,941,882 - 80,969,819 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
ARID3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819925,732 - 975,939 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19925,781 - 975,939 (+)EnsemblGRCh38hg38GRCh38
GRCh3719926,035 - 975,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3619877,037 - 923,816 (+)NCBINCBI36Build 36hg18NCBI36
Build 3419880,328 - 923,801NCBI
Celera19858,387 - 905,149 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef19699,675 - 746,206 (+)NCBIHuRef
CHM1_119925,610 - 972,376 (+)NCBICHM1_1
T2T-CHM13v2.019888,464 - 938,643 (+)NCBIT2T-CHM13v2.0
Arid3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8710,403,161 - 10,431,551 (-)NCBIGRCr8
mRatBN7.279,755,291 - 9,781,260 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl79,755,294 - 9,780,599 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx712,637,502 - 12,659,280 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0714,512,824 - 14,534,596 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0712,373,998 - 12,395,761 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0712,573,604 - 12,602,407 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl712,574,198 - 12,601,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,745,711 - 12,771,710 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4711,269,055 - 11,290,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1711,269,305 - 11,293,860 (-)NCBI
Celera77,930,752 - 7,952,277 (-)NCBICelera
Cytogenetic Map7q11NCBI
Arid3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554956,884,598 - 6,908,574 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554956,884,077 - 6,912,625 (-)NCBIChiLan1.0ChiLan1.0
ARID3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2205,256,289 - 5,306,100 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1194,495,504 - 4,545,237 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019157,094 - 207,676 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119904,414 - 948,493 (+)NCBIpanpan1.1PanPan1.1panPan2
ARID3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12057,724,747 - 57,746,637 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2057,722,917 - 57,746,622 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2057,526,366 - 57,548,245 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02058,464,582 - 58,488,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2058,467,102 - 58,488,703 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12057,519,351 - 57,543,374 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02058,001,151 - 58,023,054 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02058,201,962 - 58,226,018 (-)NCBIUU_Cfam_GSD_1.0
Arid3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118217,416,306 - 217,440,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936588394,469 - 415,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936588389,213 - 418,360 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl277,431,087 - 77,464,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1277,428,618 - 77,464,916 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2277,532,702 - 77,569,032 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.16667,426 - 727,987 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl6680,965 - 727,843 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660818,192,284 - 8,255,148 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248287,635,383 - 7,666,416 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248287,636,211 - 7,666,868 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arid3a
617 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3073
Count of miRNA genes:640
Interacting mature miRNAs:772
Transcripts:ENSMUST00000019708, ENSMUST00000105376, ENSMUST00000105377, ENSMUST00000131118, ENSMUST00000135005
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse

Markers in Region
U60335  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381079,953,722 - 79,953,829UniSTSGRCm38
MGSCv371079,416,467 - 79,416,574UniSTSGRCm37
Celera1080,968,529 - 80,968,636UniSTS
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH10919.19UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000019708   ⟹   ENSMUSP00000019708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,762,877 - 79,790,852 (+)Ensembl
GRCm38.p6 Ensembl1079,927,043 - 79,955,018 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105376   ⟹   ENSMUSP00000101015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,763,175 - 79,790,537 (+)Ensembl
GRCm38.p6 Ensembl1079,927,341 - 79,954,703 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105377   ⟹   ENSMUSP00000101016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,762,973 - 79,790,545 (+)Ensembl
GRCm38.p6 Ensembl1079,927,139 - 79,954,711 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131118   ⟹   ENSMUSP00000114261
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,766,258 - 79,767,052 (+)Ensembl
GRCm38.p6 Ensembl1079,930,424 - 79,931,218 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1079,782,113 - 79,788,477 (+)Ensembl
GRCm38.p6 Ensembl1079,946,279 - 79,952,643 (+)Ensembl
RefSeq Acc Id: NM_001288625   ⟹   NP_001275554
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,763,175 - 79,790,852 (+)NCBI
GRCm381079,927,341 - 79,955,018 (+)NCBI
Celera1080,941,853 - 80,969,825 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001288626   ⟹   NP_001275555
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,762,877 - 79,790,852 (+)NCBI
GRCm381079,927,043 - 79,955,018 (+)NCBI
Celera1080,941,853 - 80,969,825 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007880   ⟹   NP_031906
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,762,877 - 79,790,852 (+)NCBI
GRCm381079,927,043 - 79,955,018 (+)NCBI
MGSCv371079,389,817 - 79,417,757 (+)RGD
Celera1080,941,853 - 80,969,825 (+)NCBI
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513201   ⟹   XP_006513264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,765,356 - 79,790,849 (+)NCBI
GRCm381079,929,550 - 79,955,015 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513202   ⟹   XP_006513265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391079,763,212 - 79,790,849 (+)NCBI
GRCm381079,927,370 - 79,955,015 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_031906   ⟸   NM_007880
- Peptide Label: isoform a
- UniProtKB: Q3U338 (UniProtKB/Swiss-Prot),   Q80YP8 (UniProtKB/Swiss-Prot),   Q62431 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513265   ⟸   XM_006513202
- Peptide Label: isoform X1
- UniProtKB: Q3U338 (UniProtKB/Swiss-Prot),   Q80YP8 (UniProtKB/Swiss-Prot),   Q62431 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513264   ⟸   XM_006513201
- Peptide Label: isoform X1
- UniProtKB: Q3U338 (UniProtKB/Swiss-Prot),   Q80YP8 (UniProtKB/Swiss-Prot),   Q62431 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001275555   ⟸   NM_001288626
- Peptide Label: isoform b
- UniProtKB: A0A0R4J1A7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001275554   ⟸   NM_001288625
- Peptide Label: isoform a
- UniProtKB: Q3U338 (UniProtKB/Swiss-Prot),   Q80YP8 (UniProtKB/Swiss-Prot),   Q62431 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101015   ⟸   ENSMUST00000105376
RefSeq Acc Id: ENSMUSP00000101016   ⟸   ENSMUST00000105377
RefSeq Acc Id: ENSMUSP00000114261   ⟸   ENSMUST00000131118
RefSeq Acc Id: ENSMUSP00000019708   ⟸   ENSMUST00000019708
Protein Domains
ARID   REKLES

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62431-F1-model_v2 AlphaFold Q62431 1-601 view protein structure

Promoters
RGD ID:6819010
Promoter ID:MM_KWN:4800
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000105377,   OTTMUST00000057907,   UC007GAQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,389,306 - 79,390,232 (+)MPROMDB
RGD ID:6846694
Promoter ID:MM_ACW:5330
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B6
Transcripts:ARID3A.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,390,396 - 79,390,977 (+)MPROMDB
RGD ID:6819013
Promoter ID:MM_KWN:4801
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000057911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,393,416 - 79,393,916 (+)MPROMDB
RGD ID:6819012
Promoter ID:MM_KWN:4802
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Kidney
Transcripts:UC007GAR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361079,408,106 - 79,408,606 (+)MPROMDB
RGD ID:8672580
Promoter ID:EPDNEW_M14321
Type:initiation region
Name:Arid3a_1
Description:Mus musculus AT rich interactive domain 3A (BRIGHT-like) , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14322  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,927,079 - 79,927,139EPDNEW
RGD ID:8672600
Promoter ID:EPDNEW_M14322
Type:single initiation site
Name:Arid3a_2
Description:Mus musculus AT rich interactive domain 3A (BRIGHT-like) , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14321  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381079,948,543 - 79,948,603EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1328360 AgrOrtholog
Ensembl Genes ENSMUSG00000019564 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019708 ENTREZGENE
  ENSMUST00000019708.12 UniProtKB/Swiss-Prot
  ENSMUST00000105376 ENTREZGENE
  ENSMUST00000105376.2 UniProtKB/Swiss-Prot
  ENSMUST00000105377 ENTREZGENE
  ENSMUST00000105377.8 UniProtKB/TrEMBL
  ENSMUST00000131118.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARI3A/B/C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARID_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REKLES_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13496 UniProtKB/Swiss-Prot
MGD MGI:1328360 ENTREZGENE
NCBI Gene 13496 ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arid3a PhenoGen
PROSITE ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  REKLES UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ARID UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BRIGHT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J1A7 ENTREZGENE, UniProtKB/TrEMBL
  ARI3A_MOUSE UniProtKB/Swiss-Prot
  D3YVQ2_MOUSE UniProtKB/TrEMBL
  Q3U338 ENTREZGENE
  Q62431 ENTREZGENE
  Q80YP8 ENTREZGENE
UniProt Secondary Q3U338 UniProtKB/Swiss-Prot
  Q80YP8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Arid3a  AT-rich interaction domain 3A  Arid3a  AT rich interactive domain 3A (BRIGHT-like)  Symbol and/or name change 5135510 APPROVED