Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | hepatocellular carcinoma | | ISO | ARID3A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35179300 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | hepatocellular carcinoma | | ISO | ARID3A (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:35179300 | |
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# | Reference Title | Reference Citation |
1. | Mouse brain organization revealed through direct genome-scale TF expression analysis. | Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7. |
2. | MGDs mouse GO annotations | MGD data from the GO Consortium |
3. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:8543152 | PMID:9722953 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11217851 | PMID:12193717 | PMID:12466851 | PMID:12477932 | PMID:15456761 | PMID:15743806 | PMID:15747579 |
PMID:15922553 | PMID:16141072 | PMID:16141073 | PMID:16507996 | PMID:17093407 | PMID:18287559 | PMID:18583319 | PMID:18981111 | PMID:19214191 | PMID:20059953 | PMID:20412781 | PMID:20680960 |
PMID:21199920 | PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:21955986 | PMID:21963220 | PMID:22174793 | PMID:22988430 | PMID:23630078 | PMID:24146773 | PMID:24194600 | PMID:25319825 |
PMID:25535283 | PMID:25753579 | PMID:26438731 | PMID:27626380 | PMID:27965054 | PMID:29114251 | PMID:29462197 | PMID:30196744 | PMID:30930899 | PMID:35441443 | PMID:36050343 | PMID:37659731 |
Arid3a (Mus musculus - house mouse) |
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ARID3A (Homo sapiens - human) |
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Arid3a (Rattus norvegicus - Norway rat) |
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Arid3a (Chinchilla lanigera - long-tailed chinchilla) |
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ARID3A (Pan paniscus - bonobo/pygmy chimpanzee) |
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ARID3A (Canis lupus familiaris - dog) |
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Arid3a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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ARID3A (Sus scrofa - pig) |
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ARID3A (Chlorocebus sabaeus - green monkey) |
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Arid3a (Heterocephalus glaber - naked mole-rat) |
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Variants in Arid3a
617 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
U60335 |
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RefSeq Transcripts | NM_001288625 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001288626 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_007880 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006513201 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006513202 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC151846 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK034824 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK141283 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK154956 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK155569 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC050925 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BP763961 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY126533 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466553 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U60335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000019708 ⟹ ENSMUSP00000019708 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000105376 ⟹ ENSMUSP00000101015 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000105377 ⟹ ENSMUSP00000101016 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000131118 ⟹ ENSMUSP00000114261 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000135005 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001288625 ⟹ NP_001275554 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001288626 ⟹ NP_001275555 | ||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_007880 ⟹ NP_031906 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006513201 ⟹ XP_006513264 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006513202 ⟹ XP_006513265 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001275554 | (Get FASTA) | NCBI Sequence Viewer |
NP_001275555 | (Get FASTA) | NCBI Sequence Viewer | |
NP_031906 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006513264 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006513265 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAB03416 | (Get FASTA) | NCBI Sequence Viewer |
AAH50925 | (Get FASTA) | NCBI Sequence Viewer | |
BAE24635 | (Get FASTA) | NCBI Sequence Viewer | |
BAE32951 | (Get FASTA) | NCBI Sequence Viewer | |
EDL31622 | (Get FASTA) | NCBI Sequence Viewer | |
EDL31623 | (Get FASTA) | NCBI Sequence Viewer | |
EDL31624 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000019708 | ||
ENSMUSP00000019708.6 | |||
ENSMUSP00000101015 | |||
ENSMUSP00000101015.2 | |||
ENSMUSP00000101016 | |||
ENSMUSP00000101016.2 | |||
ENSMUSP00000114261.2 | |||
GenBank Protein | Q62431 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_031906 ⟸ NM_007880 |
- Peptide Label: | isoform a |
- UniProtKB: | Q3U338 (UniProtKB/Swiss-Prot), Q80YP8 (UniProtKB/Swiss-Prot), Q62431 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006513265 ⟸ XM_006513202 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3U338 (UniProtKB/Swiss-Prot), Q80YP8 (UniProtKB/Swiss-Prot), Q62431 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006513264 ⟸ XM_006513201 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3U338 (UniProtKB/Swiss-Prot), Q80YP8 (UniProtKB/Swiss-Prot), Q62431 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001275555 ⟸ NM_001288626 |
- Peptide Label: | isoform b |
- UniProtKB: | A0A0R4J1A7 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001275554 ⟸ NM_001288625 |
- Peptide Label: | isoform a |
- UniProtKB: | Q3U338 (UniProtKB/Swiss-Prot), Q80YP8 (UniProtKB/Swiss-Prot), Q62431 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000101015 ⟸ ENSMUST00000105376 |
RefSeq Acc Id: | ENSMUSP00000101016 ⟸ ENSMUST00000105377 |
RefSeq Acc Id: | ENSMUSP00000114261 ⟸ ENSMUST00000131118 |
RefSeq Acc Id: | ENSMUSP00000019708 ⟸ ENSMUST00000019708 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q62431-F1-model_v2 | AlphaFold | Q62431 | 1-601 | view protein structure |
RGD ID: | 6819010 | ||||||||
Promoter ID: | MM_KWN:4800 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day1, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Lung, MEF_B4, MEF_B6 | ||||||||
Transcripts: | ENSMUST00000105377, OTTMUST00000057907, UC007GAQ.1 | ||||||||
Position: |
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RGD ID: | 6846694 | ||||||||
Promoter ID: | MM_ACW:5330 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day2, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, MEF_B6 | ||||||||
Transcripts: | ARID3A.FSEP07-UNSPLICED | ||||||||
Position: |
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RGD ID: | 6819013 | ||||||||
Promoter ID: | MM_KWN:4801 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_4Hour | ||||||||
Transcripts: | OTTMUST00000057911 | ||||||||
Position: |
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RGD ID: | 6819012 | ||||||||
Promoter ID: | MM_KWN:4802 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | BoneMarrow_4Hour, Kidney | ||||||||
Transcripts: | UC007GAR.1 | ||||||||
Position: |
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RGD ID: | 8672580 | ||||||||
Promoter ID: | EPDNEW_M14321 | ||||||||
Type: | initiation region | ||||||||
Name: | Arid3a_1 | ||||||||
Description: | Mus musculus AT rich interactive domain 3A (BRIGHT-like) , transcriptvariant 2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M14322 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8672600 | ||||||||
Promoter ID: | EPDNEW_M14322 | ||||||||
Type: | single initiation site | ||||||||
Name: | Arid3a_2 | ||||||||
Description: | Mus musculus AT rich interactive domain 3A (BRIGHT-like) , transcriptvariant 2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M14321 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1328360 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000019564 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000019708 | ENTREZGENE |
ENSMUST00000019708.12 | UniProtKB/Swiss-Prot | |
ENSMUST00000105376 | ENTREZGENE | |
ENSMUST00000105376.2 | UniProtKB/Swiss-Prot | |
ENSMUST00000105377 | ENTREZGENE | |
ENSMUST00000105377.8 | UniProtKB/TrEMBL | |
ENSMUST00000131118.2 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.150.60 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
InterPro | ARI3A/B/C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ARID_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
ARID_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
REKLES_domain | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:13496 | UniProtKB/Swiss-Prot |
MGD | MGI:1328360 | ENTREZGENE |
NCBI Gene | 13496 | ENTREZGENE |
PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR15348 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | ARID | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Arid3a | PhenoGen |
PROSITE | ARID | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
REKLES | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | ARID | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
BRIGHT | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF46774 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0R4J1A7 | ENTREZGENE, UniProtKB/TrEMBL |
ARI3A_MOUSE | UniProtKB/Swiss-Prot | |
D3YVQ2_MOUSE | UniProtKB/TrEMBL | |
Q3U338 | ENTREZGENE | |
Q62431 | ENTREZGENE | |
Q80YP8 | ENTREZGENE | |
UniProt Secondary | Q3U338 | UniProtKB/Swiss-Prot |
Q80YP8 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2023-06-27 | Arid3a | AT-rich interaction domain 3A | Arid3a | AT rich interactive domain 3A (BRIGHT-like) | Symbol and/or name change | 5135510 | APPROVED |