Mdga2 (MAM domain containing glycosylphosphatidylinositol anchor 2) - Rat Genome Database

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Gene: Mdga2 (MAM domain containing glycosylphosphatidylinositol anchor 2) Mus musculus
Analyze
Symbol: Mdga2
Name: MAM domain containing glycosylphosphatidylinositol anchor 2
RGD ID: 1550141
MGI Page MGI
Description: Involved in regulation of presynapse assembly and regulation of synaptic membrane adhesion. Acts upstream of or within several processes, including motor behavior; negative regulation of neuron apoptotic process; and neuron migration. Is active in GABA-ergic synapse and glutamatergic synapse. Is expressed in cortical plate. Used to study amyotrophic lateral sclerosis type 18. Orthologous to human MDGA2 (MAM domain containing glycosylphosphatidylinositol anchor 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6720489L24Rik; 9330209L04Rik; A; acrodysplasia; Adp; MAM domain containing 1; MAM domain-containing glycosylphosphatidylinositol anchor protein 2; MAM domain-containing protein 1; Mamdc; Mamdc1; Mdga; Tg(Prnp-PFN1*G118V)838Kiaei
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391266,512,832 - 67,269,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1266,512,834 - 67,269,323 (-)EnsemblGRCm39 Ensembl
GRCm381266,459,419 - 67,222,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1266,466,060 - 67,222,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv371267,572,169 - 68,322,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361267,389,787 - 68,139,808 (-)NCBIMGSCv36mm8
Celera1267,602,561 - 68,352,775 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1227.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1633717   PMID:2090433   PMID:7894157   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21873635   PMID:22281501   PMID:23358245   PMID:25162227   PMID:27608760   PMID:28040732   PMID:29518482   PMID:30213953   PMID:34321999   PMID:34848499   PMID:37499910  


Genomics

Comparative Map Data
Mdga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391266,512,832 - 67,269,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1266,512,834 - 67,269,323 (-)EnsemblGRCm39 Ensembl
GRCm381266,459,419 - 67,222,549 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1266,466,060 - 67,222,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv371267,572,169 - 68,322,190 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361267,389,787 - 68,139,808 (-)NCBIMGSCv36mm8
Celera1267,602,561 - 68,352,775 (-)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1227.63NCBI
MDGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381446,839,623 - 47,675,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1446,840,092 - 47,675,605 (-)EnsemblGRCh38hg38GRCh38
GRCh371447,308,826 - 48,144,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361446,379,045 - 46,882,145 (-)NCBINCBI36Build 36hg18NCBI36
Build 341446,379,045 - 46,882,145NCBI
Celera1427,169,381 - 28,004,719 (-)NCBICelera
Cytogenetic Map14q21.3NCBI
HuRef1427,426,615 - 28,261,881 (-)NCBIHuRef
CHM1_11447,247,613 - 48,082,719 (-)NCBICHM1_1
T2T-CHM13v2.01441,038,514 - 41,874,449 (-)NCBIT2T-CHM13v2.0
Mdga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8690,482,687 - 91,346,784 (-)NCBIGRCr8
mRatBN7.2684,746,422 - 85,608,640 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl684,761,941 - 85,608,126 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx685,123,229 - 85,979,390 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0685,422,600 - 86,278,801 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0684,864,059 - 85,717,130 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0688,442,620 - 89,292,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl688,447,749 - 88,917,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0697,916,163 - 98,773,394 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4688,155,407 - 89,020,699 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1688,158,867 - 89,024,155 (-)NCBI
Celera683,298,219 - 84,140,941 (-)NCBICelera
Cytogenetic Map6q24NCBI
Mdga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540914,684,611 - 15,449,388 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540914,684,252 - 15,449,388 (+)NCBIChiLan1.0ChiLan1.0
MDGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21547,971,234 - 48,818,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11447,187,743 - 48,036,253 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01427,434,904 - 28,274,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11445,752,214 - 46,584,148 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1445,752,214 - 46,583,991 (-)Ensemblpanpan1.1panPan2
MDGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1823,827,284 - 24,608,003 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl823,832,475 - 24,607,866 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha823,644,302 - 23,948,023 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0823,992,881 - 24,785,403 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl823,999,793 - 24,785,345 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1823,651,714 - 24,434,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0823,720,107 - 24,501,367 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0824,049,174 - 24,831,369 (-)NCBIUU_Cfam_GSD_1.0
Mdga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864055,878,524 - 56,640,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365832,048,733 - 2,804,135 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365832,048,655 - 2,804,135 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1176,770,071 - 177,593,876 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11176,770,045 - 177,595,012 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21196,939,349 - 197,065,369 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12423,853,710 - 24,705,276 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2423,856,533 - 24,318,531 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605312,230,959 - 13,075,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473120,951,954 - 21,754,936 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473120,951,651 - 21,760,267 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mdga2
27759 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2224
Count of miRNA genes:801
Interacting mature miRNAs:1085
Transcripts:ENSMUST00000037181, ENSMUST00000101379, ENSMUST00000113942, ENSMUST00000177690, ENSMUST00000178724, ENSMUST00000178814, ENSMUST00000179025, ENSMUST00000179345, ENSMUST00000179577, ENSMUST00000179729
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse

Markers in Region
UniSTS:225266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381267,095,407 - 67,095,561UniSTSGRCm38
MGSCv371268,196,394 - 68,196,548UniSTSGRCm37
Celera1268,226,231 - 68,226,385UniSTS
Cytogenetic Map12C2UniSTS
cM Map1229.0UniSTS
px-31f3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B5UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map10A3-A4UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B5UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map10C3UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map10B5.1UniSTS
Cytogenetic Map18E4UniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map18D1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B3UniSTS
Cytogenetic Map12C2UniSTS
Cytogenetic Map13B2UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map18D3UniSTS
cM Map1060.0UniSTS
cM Map154.6UniSTS
cM Map439.4UniSTS
cM Map1170.0UniSTS
cM Map1336.0UniSTS
cM Map518.2UniSTS
cM Map1229.0UniSTS
cM MapX42.0UniSTS
cM Map1347.01UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001193266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_207010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_872713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY371925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC171938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000037181   ⟹   ENSMUSP00000046761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,512,834 - 67,269,323 (-)Ensembl
GRCm38.p6 Ensembl1266,466,060 - 67,222,549 (-)Ensembl
Ensembl Acc Id: ENSMUST00000101379   ⟹   ENSMUSP00000098930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,518,243 - 67,267,976 (-)Ensembl
GRCm38.p6 Ensembl1266,471,469 - 67,221,202 (-)Ensembl
Ensembl Acc Id: ENSMUST00000113942   ⟹   ENSMUSP00000109575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,517,410 - 66,517,832 (-)Ensembl
GRCm38.p6 Ensembl1266,470,636 - 66,471,058 (-)Ensembl
Ensembl Acc Id: ENSMUST00000177690
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,736,270 - 66,872,503 (-)Ensembl
GRCm38.p6 Ensembl1266,689,496 - 66,825,729 (-)Ensembl
Ensembl Acc Id: ENSMUST00000178724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,528,396 - 66,533,612 (-)Ensembl
GRCm38.p6 Ensembl1266,481,622 - 66,486,838 (-)Ensembl
Ensembl Acc Id: ENSMUST00000178814   ⟹   ENSMUSP00000137608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,517,956 - 67,267,995 (-)Ensembl
GRCm38.p6 Ensembl1266,471,182 - 67,221,221 (-)Ensembl
Ensembl Acc Id: ENSMUST00000179025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1267,259,304 - 67,269,155 (-)Ensembl
GRCm38.p6 Ensembl1267,212,530 - 67,222,381 (-)Ensembl
Ensembl Acc Id: ENSMUST00000179577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1267,242,310 - 67,269,316 (-)Ensembl
GRCm38.p6 Ensembl1267,195,536 - 67,222,542 (-)Ensembl
Ensembl Acc Id: ENSMUST00000179729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,666,376 - 66,676,887 (-)Ensembl
GRCm38.p6 Ensembl1266,619,602 - 66,630,113 (-)Ensembl
Ensembl Acc Id: ENSMUST00000222623   ⟹   ENSMUSP00000152548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,517,944 - 66,607,757 (-)Ensembl
GRCm38.p6 Ensembl1266,471,170 - 66,560,983 (-)Ensembl
Ensembl Acc Id: ENSMUST00000222987   ⟹   ENSMUSP00000152049
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,514,132 - 66,607,749 (-)Ensembl
GRCm38.p6 Ensembl1266,467,358 - 66,560,975 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223141   ⟹   ENSMUSP00000152613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,518,289 - 67,267,816 (-)Ensembl
GRCm38.p6 Ensembl1266,471,515 - 67,221,042 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223289
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1266,553,317 - 66,702,117 (-)Ensembl
GRCm38.p6 Ensembl1266,506,543 - 66,655,343 (-)Ensembl
RefSeq Acc Id: NM_001193266   ⟹   NP_001180195
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,512,833 - 67,269,323 (-)NCBI
GRCm381266,466,059 - 67,222,549 (-)NCBI
Celera1267,597,438 - 68,354,121 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_207010   ⟹   NP_996893
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,512,833 - 67,269,323 (-)NCBI
GRCm381266,466,059 - 67,222,549 (-)NCBI
MGSCv371267,572,169 - 68,322,190 (-)RGD
Celera1267,597,438 - 68,354,121 (-)ENTREZGENE
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006516013   ⟹   XP_006516076
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,512,834 - 67,268,627 (-)NCBI
GRCm381266,459,419 - 67,221,202 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006516014   ⟹   XP_006516077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,676,884 - 67,268,403 (-)NCBI
GRCm381266,630,110 - 67,221,270 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244127   ⟹   XP_011242429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,658,693 - 67,268,403 (-)NCBI
GRCm381266,611,913 - 67,221,270 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937519
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,512,832 - 67,269,323 (-)NCBI
Sequence:
RefSeq Acc Id: XR_872713
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391266,512,832 - 67,269,323 (-)NCBI
GRCm381266,466,058 - 67,222,549 (-)NCBI
Sequence:
RefSeq Acc Id: NP_996893   ⟸   NM_207010
- Peptide Label: isoform B precursor
- UniProtKB: P60755 (UniProtKB/Swiss-Prot),   A0A217FL82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001180195   ⟸   NM_001193266
- Peptide Label: isoform A precursor
- UniProtKB: B2RQF5 (UniProtKB/TrEMBL),   A0A217FL82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516076   ⟸   XM_006516013
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006516077   ⟸   XM_006516014
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011242429   ⟸   XM_011244127
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000152613   ⟸   ENSMUST00000223141
Ensembl Acc Id: ENSMUSP00000137608   ⟸   ENSMUST00000178814
Ensembl Acc Id: ENSMUSP00000152049   ⟸   ENSMUST00000222987
Ensembl Acc Id: ENSMUSP00000152548   ⟸   ENSMUST00000222623
Ensembl Acc Id: ENSMUSP00000109575   ⟸   ENSMUST00000113942
Ensembl Acc Id: ENSMUSP00000098930   ⟸   ENSMUST00000101379
Ensembl Acc Id: ENSMUSP00000046761   ⟸   ENSMUST00000037181
Protein Domains
Fibronectin type-III   Ig-like   MAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60755-F1-model_v2 AlphaFold P60755 1-949 view protein structure

Promoters
RGD ID:8678378
Promoter ID:EPDNEW_M17219
Type:initiation region
Name:Mdga2_2
Description:Mus musculus MAM domain containing glycosylphosphatidylinositolanchor 2 , transcript variant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17220  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381267,059,486 - 67,059,546EPDNEW
RGD ID:8678380
Promoter ID:EPDNEW_M17220
Type:initiation region
Name:Mdga2_1
Description:Mus musculus MAM domain containing glycosylphosphatidylinositolanchor 2 , transcript variant B, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17219  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381267,222,564 - 67,222,624EPDNEW
RGD ID:6823146
Promoter ID:MM_KWN:11781
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_207010,   UC007NRM.1,   UC007NRO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361268,322,026 - 68,322,526 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444706 AgrOrtholog
Ensembl Genes ENSMUSG00000034912 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037181 ENTREZGENE
  ENSMUST00000037181.16 UniProtKB/TrEMBL
  ENSMUST00000101379.10 UniProtKB/TrEMBL
  ENSMUST00000113942.3 UniProtKB/TrEMBL
  ENSMUST00000178814.9 UniProtKB/TrEMBL
  ENSMUST00000222623.2 UniProtKB/TrEMBL
  ENSMUST00000222987.2 UniProtKB/TrEMBL
  ENSMUST00000223141 ENTREZGENE
  ENSMUST00000223141.2 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IgLON_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_domain-containing UniProtKB/TrEMBL
KEGG Report mmu:320772 UniProtKB/Swiss-Prot
MGD MGI:2444706 ENTREZGENE
NCBI Gene 320772 ENTREZGENE
PANTHER APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR UniProtKB/TrEMBL
  IGLON FAMILY OF IMMUNOGLOBULIN SUPERFAMILY-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM DOMAIN CONTAINING GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM DOMAIN-CONTAINING GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN AMALGAM UniProtKB/TrEMBL
Pfam I-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mdga2 PhenoGen
PRINTS MAMDOMAIN UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VIL8_MOUSE UniProtKB/TrEMBL
  A0A1Y7VJM7_MOUSE UniProtKB/TrEMBL
  A0A217FL82 ENTREZGENE, UniProtKB/TrEMBL
  B2RQF5 ENTREZGENE, UniProtKB/TrEMBL
  F6UYI7_MOUSE UniProtKB/TrEMBL
  MDGA2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UUB8_MOUSE UniProtKB/TrEMBL
  Q3UV20_MOUSE UniProtKB/TrEMBL
  Q8C277_MOUSE UniProtKB/TrEMBL
  Q8CAE6_MOUSE UniProtKB/TrEMBL