Rpgrip1l (Rpgrip1-like) - Rat Genome Database

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Gene: Rpgrip1l (Rpgrip1-like) Mus musculus
Analyze
Symbol: Rpgrip1l
Name: Rpgrip1-like
RGD ID: 1322375
MGI Page MGI
Description: Predicted to enable thromboxane A2 receptor binding activity. Acts upstream of or within several processes, including animal organ development; chordate embryonic development; and embryonic limb morphogenesis. Located in ciliary basal body; ciliary transition zone; and cytoplasm. Is expressed in organ of Corti; ovary; and testis. Used to study Joubert syndrome 7 and Meckel syndrome. Human ortholog(s) of this gene implicated in several diseases, including Joubert syndrome 7; Meckel syndrome 5; anencephaly; retinitis pigmentosa 3; and vascular dementia. Orthologous to human RPGRIP1L (RPGRIP1 like); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1700047E16Rik; 4931437C01; fan; fantom; Ftm; nephrocystin-8; Np; Nphp8; RPGR-interacting protein 1-like protein; RPGRIP1-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,943,658 - 92,039,919 (-)NCBIGRCm39mm39
GRCm39 Ensembl891,943,658 - 92,039,890 (-)Ensembl
GRCm38891,217,030 - 91,313,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)EnsemblGRCm38mm10GRCm38
MGSCv37893,740,929 - 93,837,121 (-)NCBIGRCm37mm9NCBIm37
MGSCv36894,107,135 - 94,203,367 (-)NCBImm8
Celera895,531,605 - 95,629,333 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.29NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abdominal situs ambiguus  (IEA)
abnormal accessory nerve morphology  (IEA)
abnormal atrioventricular cushion morphology  (IEA)
abnormal azygos vein topology  (IEA)
abnormal basilar artery morphology  (IEA)
abnormal basioccipital bone morphology  (IEA)
abnormal basisphenoid bone morphology  (IEA)
abnormal bile duct development  (IAGP)
abnormal brain vasculature morphology  (IEA)
abnormal carotid artery morphology  (IEA)
abnormal coronary sinus connection  (IEA)
abnormal cranial blood vasculature morphology  (IEA)
abnormal cranium morphology  (IAGP)
abnormal ductus venosus valve topology  (IEA)
abnormal eye muscle morphology  (IEA)
abnormal forebrain morphology  (IAGP)
abnormal heart position or orientation  (IEA)
abnormal hepatic portal vein formation  (IEA)
abnormal hindbrain morphology  (IEA)
abnormal hyoid bone morphology  (IEA)
abnormal hypoglossal nerve topology  (IEA)
abnormal incisor morphology  (IEA)
abnormal inferior vena cava topology  (IEA)
abnormal inferior vena cava valve morphology  (IEA)
abnormal inner ear morphology  (IEA)
abnormal internal carotid artery morphology  (IEA)
abnormal internal carotid artery topology  (IEA)
abnormal intestine placement  (IEA)
abnormal intrathoracic topology of vagus nerve  (IEA)
abnormal left-right axis patterning  (IAGP)
abnormal limb bud morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal maxilla morphology  (IAGP)
abnormal midbrain morphology  (IEA)
abnormal Mullerian duct topology  (IEA)
abnormal nasal cavity morphology  (IEA)
abnormal nasal septum morphology  (IEA)
abnormal neural tube morphology  (IAGP)
abnormal olfactory bulb morphology  (IEA)
abnormal optic cup morphology  (IEA)
abnormal optic stalk morphology  (IEA)
abnormal palate morphology  (IEA)
abnormal pancreas topology  (IEA)
abnormal pineal gland morphology  (IEA)
abnormal placenta morphology  (IAGP)
abnormal placental labyrinth vasculature morphology  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal rib morphology  (IEA)
abnormal right lung morphology  (IEA)
abnormal subclavian artery origin  (IEA)
abnormal testis morphology  (IEA)
abnormal umbilical vein topology  (IEA)
abnormal ventral pancreas morphology  (IEA)
abnormal vertebral arch morphology  (IEA)
abnormal vertebral artery origin  (IEA)
abnormal vertebral body morphology  (IEA)
abnormal viscerocranium morphology  (IAGP)
abnormal vitelline vein connection  (IEA)
absent adenohypophysis  (IEA)
absent brain internal capsule  (IEA)
absent canalicular internal carotid artery segment  (IEA)
absent connection between subcutaneous lymph vessels and lymph sac  (IEA)
absent corpus callosum  (IAGP)
absent ductus venosus valve  (IEA)
absent floor plate  (IAGP)
absent hypoglossal nerve  (IEA)
absent intracranial segment of vertebral artery  (IEA)
absent intrahepatic inferior vena cava segment  (IEA)
absent oculomotor nerve  (IEA)
absent olfactory bulb  (IAGP)
absent optic chiasm  (IEA)
absent parasellar internal carotid artery  (IEA)
absent Rathke's pouch  (IAGP)
absent segment of posterior cerebral artery  (IEA)
absent spleen  (IEA)
absent sublingual gland  (IEA)
absent superior cervical ganglion  (IEA)
absent vertebral body  (IEA)
anastomosis between internal carotid artery and basilar artery  (IEA)
anomalous pulmonary venous connection  (IEA)
anophthalmia  (IAGP)
atrial septal defect  (IEA)
atrial situs inversus  (IEA)
bifid ureter  (IEA)
broad limb buds  (IAGP)
cerebellum hypoplasia  (IAGP)
cleft palate  (IEA)
cleft upper lip  (IAGP)
common atrium  (IEA)
decreased corpus callosum size  (IAGP)
decreased tongue size  (IEA)
dextrocardia  (IAGP)
dilated brain ventricles  (IAGP)
dilated liver sinusoidal spaces  (IEA)
double outlet left ventricle  (IEA)
double outlet right ventricle  (IEA)
enlarged pericardium  (IAGP)
exencephaly  (IAGP)
fusion of vertebral arches  (IEA)
heterochrony  (IEA)
heterotaxia  (IAGP)
holoprosencephaly  (IEA)
inverse situs of great intrathoracic arteries  (IEA)
left atrial isomerism  (IEA)
left pulmonary isomerism  (IAGP)
liver cysts  (IEA)
liver fibrosis  (IAGP)
liver hemorrhage  (IEA)
mandible hypoplasia  (IAGP)
microphthalmia  (IAGP)
muscular ventricular septal defect  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
perimembraneous ventricular septal defect  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
persistent right 6th pharyngeal arch artery  (IEA)
persistent right dorsal aorta  (IEA)
placenta hemorrhage  (IAGP)
placenta necrosis  (IAGP)
polydactyly  (IEA)
preaxial polydactyly  (IAGP)
preweaning lethality, complete penetrance  (IAGP)
retro-esophageal left subclavian artery  (IEA)
right aortic arch  (IEA)
small dorsal root ganglion  (IEA)
small olfactory bulb  (IAGP)
small placenta  (IAGP)
small Rathke's pouch  (IAGP)
small superior cervical ganglion  (IEA)
spleen hypoplasia  (IEA)
subcutaneous edema  (IEA)
symmetric azygos veins  (IEA)
thin facial nerve  (IEA)
thin hypoglossal nerve  (IEA)
thin motoric part of trigeminal nerve  (IEA)
thoracoschisis  (IEA)
transposition of great arteries  (IEA)
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11956760   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16778019   PMID:17553904   PMID:18256137   PMID:18297065  
PMID:20969841   PMID:21037323   PMID:21267068   PMID:21293032   PMID:21490064   PMID:21539829   PMID:21565611   PMID:21677750   PMID:21873635   PMID:22832925   PMID:22927466   PMID:23469020  
PMID:24721909   PMID:24807221   PMID:25398052   PMID:26071364   PMID:26150391   PMID:27064284   PMID:29372668   PMID:29466054   PMID:29487109   PMID:29539633   PMID:29650680   PMID:30133325  
PMID:30689641   PMID:30692221   PMID:32325033   PMID:32907846  


Genomics

Comparative Map Data
Rpgrip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,943,658 - 92,039,919 (-)NCBIGRCm39mm39
GRCm39 Ensembl891,943,658 - 92,039,890 (-)Ensembl
GRCm38891,217,030 - 91,313,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)EnsemblGRCm38mm10GRCm38
MGSCv37893,740,929 - 93,837,121 (-)NCBIGRCm37mm9NCBIm37
MGSCv36894,107,135 - 94,203,367 (-)NCBImm8
Celera895,531,605 - 95,629,333 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.29NCBI
RPGRIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1653,598,153 - 53,703,938 (-)EnsemblGRCh38hg38GRCh38
GRCh381653,598,153 - 53,703,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371653,632,065 - 53,737,771 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361652,191,319 - 52,295,272 (-)NCBINCBI36hg18NCBI36
Celera1638,148,632 - 38,252,362 (-)NCBI
Cytogenetic Map16q12.2NCBI
HuRef1639,520,935 - 39,624,598 (-)NCBIHuRef
CHM1_11655,040,948 - 55,144,907 (-)NCBICHM1_1
Rpgrip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21915,692,189 - 15,785,083 (+)NCBI
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01917,115,266 - 17,208,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01928,182,466 - 28,274,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41916,859,114 - 16,952,054 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11916,866,903 - 16,953,660 (+)NCBI
Celera1915,599,054 - 15,691,270 (+)NCBICelera
Cytogenetic Map19p11NCBI
Rpgrip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
RPGRIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11652,920,790 - 53,023,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1652,920,796 - 53,023,174 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01633,836,361 - 33,939,265 (-)NCBIMhudiblu_PPA_v0panPan3
RPGRIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,080,159 - 62,179,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,080,080 - 62,178,284 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,713,210 - 58,814,422 (+)NCBI
ROS_Cfam_1.0262,621,842 - 62,723,085 (+)NCBI
UMICH_Zoey_3.1259,445,507 - 59,546,724 (+)NCBI
UNSW_CanFamBas_1.0260,472,284 - 60,567,340 (+)NCBI
UU_Cfam_GSD_1.0261,348,461 - 61,449,678 (+)NCBI
Rpgrip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934953,267,379 - 53,369,387 (+)NCBI
SpeTri2.0NW_0049364756,219,187 - 6,321,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPGRIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl631,564,986 - 31,661,194 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1631,564,937 - 31,660,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2628,582,612 - 28,591,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPGRIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1539,388,632 - 39,487,223 (-)NCBI
ChlSab1.1 Ensembl539,387,107 - 39,487,092 (-)Ensembl
Vero_WHO_p1.0NW_02366604736,894,183 - 36,995,212 (+)NCBI
Rpgrip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247573,080,162 - 3,172,750 (+)NCBI

Position Markers
RH138333  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38891,219,554 - 91,219,766UniSTSGRCm38
MGSCv37893,743,453 - 93,743,665UniSTSGRCm37
Celera895,534,128 - 95,534,340UniSTS
Cytogenetic Map8C5UniSTS
cM Map841.8UniSTS
Rpgrip1l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C5UniSTS
cM Map844.29UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined885716921119717069Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined885716921119717069Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined885716921119717069Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889000000130800000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2647
Count of miRNA genes:822
Interacting mature miRNAs:1102
Transcripts:ENSMUST00000047783, ENSMUST00000132757, ENSMUST00000136198, ENSMUST00000139113
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006530996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC139351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ344253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ691510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047783   ⟹   ENSMUSP00000042702
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132757   ⟹   ENSMUSP00000120818
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,308,036 - 91,311,080 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,269,632 - 91,276,762 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139113   ⟹   ENSMUSP00000118230
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,218,956 - 91,313,222 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209564   ⟹   ENSMUSP00000147763
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,307,989 - 91,310,417 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209616   ⟹   ENSMUSP00000147300
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,251,262 - 91,270,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000210538
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,232,844 - 91,242,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211185
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl891,276,702 - 91,281,506 (-)Ensembl
RefSeq Acc Id: NM_173431   ⟹   NP_775607
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,943,658 - 92,039,850 (-)NCBI
GRCm38891,217,030 - 91,313,222 (-)NCBI
MGSCv37893,740,929 - 93,837,121 (-)RGD
Celera895,531,605 - 95,629,333 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006530991   ⟹   XP_006531054
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
GRCm38891,217,401 - 91,313,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530992   ⟹   XP_006531055
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,681 (-)NCBI
GRCm38891,217,401 - 91,313,053 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530993   ⟹   XP_006531056
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
GRCm38891,217,401 - 91,313,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530994   ⟹   XP_006531057
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
GRCm38891,217,401 - 91,313,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530995   ⟹   XP_006531058
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,014,284 (-)NCBI
GRCm38891,217,401 - 91,287,649 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006530996   ⟹   XP_006531059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,987,671 - 92,039,919 (-)NCBI
GRCm38891,261,043 - 91,313,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030243548   ⟹   XP_030099408
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,997,186 - 92,039,919 (-)NCBI
GRCm38891,271,569 - 91,313,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154038   ⟹   XP_036009931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
RefSeq Acc Id: XM_036154039   ⟹   XP_036009932
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
RefSeq Acc Id: XM_036154040   ⟹   XP_036009933
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,005,124 (-)NCBI
RefSeq Acc Id: XR_003947280
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39891,944,029 - 92,039,919 (-)NCBI
GRCm38891,217,401 - 91,313,291 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_775607   ⟸   NM_173431
- UniProtKB: Q8CG73 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006531057   ⟸   XM_006530994
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006531056   ⟸   XM_006530993
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006531054   ⟸   XM_006530991
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006531055   ⟸   XM_006530992
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006531058   ⟸   XM_006530995
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006531059   ⟸   XM_006530996
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_030099408   ⟸   XM_030243548
- Peptide Label: isoform X9
RefSeq Acc Id: ENSMUSP00000118230   ⟸   ENSMUST00000139113
RefSeq Acc Id: ENSMUSP00000120818   ⟸   ENSMUST00000132757
RefSeq Acc Id: ENSMUSP00000042702   ⟸   ENSMUST00000047783
RefSeq Acc Id: ENSMUSP00000147300   ⟸   ENSMUST00000209616
RefSeq Acc Id: ENSMUSP00000147763   ⟸   ENSMUST00000209564
RefSeq Acc Id: XP_036009932   ⟸   XM_036154039
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036009931   ⟸   XM_036154038
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036009933   ⟸   XM_036154040
- Peptide Label: isoform X7
Protein Domains
C2   C2-C2_1

Promoters
RGD ID:8667847
Promoter ID:EPDNEW_M11954
Type:multiple initiation site
Name:Rpgrip1l_1
Description:Mus musculus Rpgrip1-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38891,313,233 - 91,313,293EPDNEW
RGD ID:6843177
Promoter ID:MM_KWN:55250
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000047783,   OTTMUST00000059886,   OTTMUST00000063364,   OTTMUST00000063365,   UC009MSR.1,   UC009MSS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36893,837,214 - 93,837,714 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920563 AgrOrtholog
Ensembl Genes ENSMUSG00000033282 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000042702 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000118230 UniProtKB/TrEMBL
  ENSMUSP00000120818 UniProtKB/TrEMBL
  ENSMUSP00000147300 UniProtKB/TrEMBL
  ENSMUSP00000147763 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000047783 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000132757 UniProtKB/TrEMBL
  ENSMUST00000139113 UniProtKB/TrEMBL
  ENSMUST00000209564 UniProtKB/TrEMBL
  ENSMUST00000209616 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C2-C2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C2_dom UniProtKB/Swiss-Prot
  C2_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPGRIP1_C UniProtKB/Swiss-Prot
  RPGRIP1_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPGRIP1L UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:244585 UniProtKB/Swiss-Prot
MGD MGI:1920563 ENTREZGENE
NCBI Gene 244585 ENTREZGENE
PANTHER PTHR14240 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14240:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C2-C2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00168 UniProtKB/Swiss-Prot
  RPGR1_C UniProtKB/Swiss-Prot
PhenoGen Rpgrip1l PhenoGen
PROSITE PS50004 UniProtKB/Swiss-Prot
SMART SM00239 UniProtKB/Swiss-Prot
UniProt A0A1B0GQY2_MOUSE UniProtKB/TrEMBL
  A0A1B0GS23_MOUSE UniProtKB/TrEMBL
  D3Z0V3_MOUSE UniProtKB/TrEMBL
  D6RIK9_MOUSE UniProtKB/TrEMBL
  FTM_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary G3X958 UniProtKB/Swiss-Prot