Elp1 (elongator complex protein 1) - Rat Genome Database

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Gene: Elp1 (elongator complex protein 1) Mus musculus
Analyze
Symbol: Elp1
Name: elongator complex protein 1
RGD ID: 734036
MGI Page MGI
Description: Predicted to enable several functions, including ATP binding activity; protein self-association; and tRNA binding activity. Involved in tRNA wobble uridine modification. Located in cytoplasm. Is expressed in several structures, including genitourinary system; liver; lung; spleen; and telencephalon. Used to study Riley-Day syndrome and hemophagocytic lymphohistiocytosis. Human ortholog(s) of this gene implicated in Riley-Day syndrome; asthma; medulloblastoma; and scoliosis. Orthologous to human ELP1 (elongator acetyltransferase complex subunit 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3110040G09Rik; 6030413P05; C78473; I; IKAP; ikappaB kinase complex-associated protein; Ikb; Ikbkap; IKK complex-associated protein; IKK-complex-associated protein IKAP; inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39456,746,547 - 56,802,565 (-)NCBIGRCm39mm39
GRCm39 Ensembl456,749,680 - 56,802,331 (-)Ensembl
GRCm38456,746,547 - 56,802,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl456,749,680 - 56,802,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv37456,762,552 - 56,815,203 (-)NCBIGRCm37mm9NCBIm37
MGSCv36456,844,828 - 56,896,313 (-)NCBImm8
Celera456,657,583 - 56,710,224 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA,ISO)
cytosol  (IBA,ISO)
elongator holoenzyme complex  (IBA,ISO)
nucleus  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal autonomic nervous system physiology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal brain development  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cardinal vein morphology  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal dorsal root ganglion morphology  (IAGP)
abnormal embryonic erythropoiesis  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal facial morphology  (IAGP)
abnormal forebrain development  (IAGP)
abnormal fungiform papillae morphology  (IAGP)
abnormal gait  (IAGP)
abnormal heart development  (IAGP)
abnormal heart looping  (IAGP)
abnormal innervation pattern to muscle  (IAGP)
abnormal intestinal peristalsis  (IAGP)
abnormal intestine physiology  (IAGP)
abnormal locomotor coordination  (IAGP)
abnormal lumbar dorsal root ganglion morphology  (IAGP)
abnormal muscle spindle morphology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal neurite morphology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal optic disk morphology  (IAGP)
abnormal optic nerve innervation  (IAGP)
abnormal placenta development  (IAGP)
abnormal postural reflex  (IAGP)
abnormal posture  (IAGP)
abnormal sensory ganglion morphology  (IAGP)
abnormal sensory neuron innervation pattern  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal spongiotrophoblast layer morphology  (IAGP)
abnormal stellate ganglion morphology  (IAGP)
abnormal submandibular gland morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal superior cervical ganglion morphology  (IAGP)
abnormal sympathetic ganglion morphology  (IAGP)
abnormal taste bud morphology  (IAGP)
abnormal telencephalon development  (IAGP)
abnormal vascular development  (IAGP)
abnormal vitelline vasculature morphology  (IAGP)
absent atrioventricular cushions  (IAGP)
absent gastric milk in neonates  (IAGP)
absent heartbeat  (IAGP)
absent lamina terminalis  (IAGP)
absent limb buds  (IAGP)
absent optic vesicle  (IAGP)
absent pharyngeal arches  (IAGP)
absent second pharyngeal arch  (IAGP)
absent visceral yolk sac blood islands  (IAGP)
ataxia  (IAGP)
audiogenic seizures  (IAGP)
blepharoptosis  (IAGP)
conjunctivitis  (IAGP)
decreased birth body size  (IAGP)
decreased birth weight  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased brain weight  (IAGP)
decreased embryo size  (IAGP)
decreased epididymal fat pad weight  (IAGP)
decreased fetal size  (IAGP)
decreased fetal weight  (IAGP)
decreased neuron number  (IAGP)
decreased sensory neuron number  (IAGP)
decreased survivor rate  (IAGP)
decreased total body fat amount  (IAGP)
delayed bone ossification  (IAGP)
distended pericardium  (IAGP)
distended urinary bladder  (IAGP)
dorsal root ganglion degeneration  (IAGP)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
environmentally induced seizures  (IAGP)
excessive scratching  (IAGP)
fetal growth retardation  (IAGP)
hydronephrosis  (IAGP)
impaired coordination  (IAGP)
incomplete embryo turning  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased grooming behavior  (IAGP)
increased neuron apoptosis  (IAGP)
increased neuron number  (IAGP)
increased thermal nociceptive threshold  (IAGP)
kyphoscoliosis  (IAGP)
kyphosis  (IAGP)
limb grasping  (IAGP)
mandibular retrognathia  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neurodegeneration  (IAGP)
neurogenic bladder  (IAGP)
optic nerve atrophy  (IAGP)
optic neuropathy  (IAGP)
pallor  (IAGP)
pericardial effusion  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
slow postnatal weight gain  (IAGP)
small dorsal root ganglion  (IAGP)
small placenta  (IAGP)
small superior cervical ganglion  (IAGP)
superior cervical ganglion degeneration  (IAGP)
thin retina ganglion layer  (IAGP)
References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11747609   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17644305  
PMID:18303054   PMID:18799693   PMID:19015235   PMID:19185337   PMID:19500387   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22046433   PMID:22854966   PMID:22922231   PMID:23515154  
PMID:23717213   PMID:24173031   PMID:24457600   PMID:24760006   PMID:24917501   PMID:26365490   PMID:26769677   PMID:27699209   PMID:27739607   PMID:27997532   PMID:28167615   PMID:28378742  
PMID:28439028   PMID:28507509   PMID:28592461   PMID:29497044   PMID:29701768   PMID:29929962   PMID:30196744   PMID:30550785   PMID:30905397   PMID:31321879   PMID:31827135   PMID:32290105  
PMID:32581705   PMID:33976153   PMID:34036438   PMID:34590699   PMID:34620845   PMID:34819065  


Genomics

Comparative Map Data
Elp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39456,746,547 - 56,802,565 (-)NCBIGRCm39mm39
GRCm39 Ensembl456,749,680 - 56,802,331 (-)Ensembl
GRCm38456,746,547 - 56,802,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl456,749,680 - 56,802,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv37456,762,552 - 56,815,203 (-)NCBIGRCm37mm9NCBIm37
MGSCv36456,844,828 - 56,896,313 (-)NCBImm8
Celera456,657,583 - 56,710,224 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
ELP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389108,867,517 - 108,934,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9108,866,898 - 108,934,328 (-)EnsemblGRCh38hg38GRCh38
GRCh379111,629,797 - 111,696,404 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369110,669,621 - 110,736,217 (-)NCBINCBI36hg18NCBI36
Build 349108,709,355 - 108,775,951NCBI
Celera982,129,095 - 82,195,809 (-)NCBI
Cytogenetic Map9q31.3NCBI
HuRef981,229,552 - 81,296,258 (-)NCBIHuRef
CHM1_19111,776,416 - 111,843,122 (-)NCBICHM1_1
T2T-CHM13v2.09121,036,644 - 121,103,197 (-)NCBI
Elp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2571,453,338 - 71,505,833 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl571,456,310 - 71,505,762 (-)Ensembl
Rnor_6.0573,503,406 - 73,552,798 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl573,503,407 - 73,552,798 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0577,661,315 - 77,710,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4574,657,287 - 74,707,435 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1574,662,400 - 74,712,548 (-)NCBI
Celera570,310,353 - 70,359,709 (-)NCBICelera
Cytogenetic Map5q24NCBI
Elp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541918,038,507 - 18,095,894 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541918,035,197 - 18,097,681 (+)NCBIChiLan1.0ChiLan1.0
ELP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19108,194,008 - 108,258,500 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9108,194,011 - 108,258,500 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0980,020,131 - 80,085,076 (-)NCBIMhudiblu_PPA_v0panPan3
ELP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,035,667 - 64,094,402 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,037,506 - 64,093,819 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1162,437,897 - 62,496,433 (-)NCBI
ROS_Cfam_1.01165,169,787 - 65,228,593 (-)NCBI
ROS_Cfam_1.0 Ensembl1165,170,724 - 65,228,543 (-)Ensembl
UMICH_Zoey_3.11163,690,982 - 63,749,074 (-)NCBI
UNSW_CanFamBas_1.01163,709,775 - 63,768,691 (-)NCBI
UU_Cfam_GSD_1.01164,402,753 - 64,461,318 (-)NCBI
Elp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,284,678 - 179,342,148 (-)NCBI
SpeTri2.0NW_0049365593,924,185 - 3,981,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1249,905,472 - 249,981,641 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11249,905,550 - 249,980,570 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21280,435,992 - 280,511,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ELP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11230,620,685 - 30,687,583 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1230,620,278 - 30,687,405 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603511,996,706 - 12,063,562 (-)NCBIVero_WHO_p1.0
Elp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247582,575,671 - 2,646,313 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247582,575,516 - 2,646,313 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D4Mit288  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38456,769,379 - 56,769,494UniSTSGRCm38
MGSCv37456,782,251 - 56,782,366UniSTSGRCm37
Celera456,677,310 - 56,677,409UniSTS
Cytogenetic Map4B3UniSTS
cM Map428.6UniSTS
Whitehead Genetic428.4UniSTS
Ikbkap  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38456,773,075 - 56,773,253UniSTSGRCm38
MGSCv37456,785,947 - 56,786,125UniSTSGRCm37
Celera456,680,984 - 56,681,162UniSTS
Cytogenetic Map4B3UniSTS
cM Map427.0UniSTS
C78473  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38456,751,286 - 56,751,365UniSTSGRCm38
MGSCv37456,764,158 - 56,764,237UniSTSGRCm37
Celera456,659,189 - 56,659,268UniSTS
Cytogenetic Map4B3UniSTS
cM Map427.0UniSTS
Whitehead/MRC_RH4933.03UniSTS
UniSTS:225006  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38456,760,557 - 56,760,707UniSTSGRCm38
MGSCv37456,773,429 - 56,773,579UniSTSGRCm37
Celera456,668,461 - 56,668,628UniSTS
Cytogenetic Map4B3UniSTS
cM Map427.0UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
1301941Mmtg1_mmodifier of mammary tumor growth 1 (mouse)Not determined44565844283099157Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12879977Bod2_mbone length and organs 2 (mouse)44628353180283678Mouse
10043880Adip23_madiposity 23 (mouse)Not determined44628353180283678Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
10449022Aanq1_maristolochic acid nephrotoxicity QTL 1 (mouse)44660382680603826Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
11532688Mh_mmodifier of hemostasis (mouse)44830477582304775Mouse
25314308Mlh1fc1_mMLH1 foci count 1 (mouse)44850000076918237Mouse
1301995Lprm1_mlymphoproliferation modifier 1 (mouse)Not determined45010026284100408Mouse
1301213Lgth3_mbody length 3 (mouse)Not determined45010026284100408Mouse
13207572Spir2_mStreptococcus pneumoniae infection resistance 2 (mouse)45068279588510637Mouse
13432173Actrse1_mactivity response to saline/ethanol 1 (mouse)45328712856987128Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993763305Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
13524838Hbasrq1a_mhabituation of the acoustic startle response QTL 1a (mouse)45447158988471589Mouse
13524841Hbasrq1_mhabituation of the acoustic startle response QTL 1 (mouse)45447158988471589Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1341
Count of miRNA genes:672
Interacting mature miRNAs:834
Transcripts:ENSMUST00000030140, ENSMUST00000126441, ENSMUST00000139445, ENSMUST00000140595, ENSMUST00000150002, ENSMUST00000171411
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_026079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_390319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF140786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF367244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF387811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL807762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC035529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030140   ⟹   ENSMUSP00000030140
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,749,680 - 56,802,331 (-)Ensembl
GRCm38.p6 Ensembl456,749,680 - 56,802,331 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126441
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,776,466 - 56,779,739 (-)Ensembl
GRCm38.p6 Ensembl456,776,466 - 56,779,739 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,754,868 - 56,758,391 (-)Ensembl
GRCm38.p6 Ensembl456,754,868 - 56,758,391 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,767,857 - 56,772,616 (-)Ensembl
GRCm38.p6 Ensembl456,767,857 - 56,772,616 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150002
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,751,015 - 56,763,330 (-)Ensembl
GRCm38.p6 Ensembl456,751,015 - 56,763,330 (-)Ensembl
RefSeq Acc Id: ENSMUST00000171411
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl456,751,012 - 56,757,285 (-)Ensembl
GRCm38.p6 Ensembl456,751,012 - 56,757,285 (-)Ensembl
RefSeq Acc Id: NM_026079   ⟹   NP_080355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39456,749,680 - 56,802,331 (-)NCBI
GRCm38456,749,680 - 56,802,331 (-)ENTREZGENE
MGSCv37456,762,552 - 56,815,203 (-)RGD
Celera456,657,583 - 56,710,224 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030253419   ⟹   XP_030109279
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39456,746,547 - 56,778,986 (-)NCBI
GRCm38456,746,547 - 56,778,986 (-)NCBI
Sequence:
RefSeq Acc Id: XR_390319
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39456,773,075 - 56,802,565 (-)NCBI
GRCm38456,773,075 - 56,802,569 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080355   ⟸   NM_026079
- UniProtKB: Q7TT37 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109279   ⟸   XM_030253419
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000030140   ⟸   ENSMUST00000030140

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TT37-F1-model_v2 AlphaFold Q7TT37 1-1333 view protein structure

Promoters
RGD ID:6835492
Promoter ID:MM_KWN:37727
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:UC008SXP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36456,769,701 - 56,770,201 (-)MPROMDB
RGD ID:6883494
Promoter ID:EPDNEW_M5190
Type:initiation region
Name:Ikbkap_1
Description:Mus musculus inhibitor of kappa light polypeptide enhancer inB cells, kinase complex-associated protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38456,802,277 - 56,802,337EPDNEW
RGD ID:6835493
Promoter ID:MM_KWN:37733
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   ES_Cell
Transcripts:NM_026079,   UC008SXR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36456,814,896 - 56,815,396 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914544 AgrOrtholog
Ensembl Genes ENSMUSG00000028431 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000030140 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030140 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Elp1 UniProtKB/Swiss-Prot
KEGG Report mmu:230233 UniProtKB/Swiss-Prot
MGD MGI:1914544 ENTREZGENE
NCBI Gene 230233 ENTREZGENE
PANTHER PTHR12747 UniProtKB/Swiss-Prot
Pfam IKI3 UniProtKB/Swiss-Prot
PhenoGen Elp1 PhenoGen
PIRSF IKAP UniProtKB/Swiss-Prot
UniProt ELP1_MOUSE UniProtKB/Swiss-Prot
  Q3TD73_MOUSE UniProtKB/TrEMBL
  Q7TT37 ENTREZGENE
UniProt Secondary Q3UHY6 UniProtKB/Swiss-Prot
  Q7TQH1 UniProtKB/Swiss-Prot
  Q8C6B3 UniProtKB/Swiss-Prot
  Q8CBI3 UniProtKB/Swiss-Prot
  Q8CH82 UniProtKB/Swiss-Prot
  Q8VHU5 UniProtKB/Swiss-Prot
  Q8VHV9 UniProtKB/Swiss-Prot
  Q9CT81 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-08-01 Elp1  elongator complex protein 1  Ikbkap  inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein  Symbol and/or name change 5135510 APPROVED
2012-02-07 Ikbkap  inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein  Ikbkap  inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein  Symbol and/or name change 5135510 APPROVED