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ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle organization
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Accession:GO:0016050 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle.
Synonyms:exact_synonym: vesicle organisation
 related_synonym: vesicle organization and biogenesis

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vesicle organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALS2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within ISO (PMID:16085057) MGI PMID:16085057 NCBI chr10:87,389,130...87,473,134 JBrowse link
G CADPS calcium dependent secretion activator acts_upstream_of_or_within ISO (PMID:15820695) MGI PMID:15820695 NCBI chr22:23,471,616...23,948,694 JBrowse link
G CAV1 caveolin 1 involved_in ISO (PMID:12743374) BHF-UCL PMID:12743374 NCBI chr21:85,222,724...85,258,562
Ensembl chr21:85,222,879...85,258,627 		JBrowse link
G CAV2 caveolin 2 involved_in ISO (PMID:12743374) BHF-UCL PMID:12743374 NCBI chr21:85,197,452...85,206,521
Ensembl chr21:85,197,537...85,206,588 		JBrowse link
G CD2AP CD2 associated protein ISO RGD PMID:15001553 RGD:1302417 NCBI chr17:24,664,245...24,815,786
Ensembl chr17:24,663,872...24,815,829 		JBrowse link
G FBXO5 F-box protein 5 acts_upstream_of_or_within ISO (PMID:17190794) MGI PMID:17190794 NCBI chr13:80,453,345...80,467,590
Ensembl chr13:80,453,355...80,466,778 		JBrowse link
G FNBP1L formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,686,836...39,788,948
Ensembl chr20:39,686,742...39,788,893 		JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:24,732,774...24,743,636
Ensembl chr 6:24,742,024...24,742,863 		JBrowse link
G SAR1A secretion associated Ras related GTPase 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
G SAR1B secretion associated Ras related GTPase 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:37,409,666...37,433,462
Ensembl chr23:37,406,770...37,444,447 		JBrowse link
G SNX10 sorting nexin 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:31,999,253...32,044,967
Ensembl chr21:31,998,277...32,081,843 		JBrowse link
G SNX11 sorting nexin 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:68,504,236...68,527,676
Ensembl chr16:68,504,640...68,529,030 		JBrowse link
G SORT1 sortilin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:24,150,210...24,235,518
Ensembl chr20:24,150,300...24,239,503 		JBrowse link
G WASL WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr21:92,480,392...92,546,725
Ensembl chr21:92,482,918...92,546,481 		JBrowse link
acrosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACRBP acrosin binding protein involved_in ISO (MGI:5789676|PMID:27303034) UniProt PMID:27303034 MGI:5789676 NCBI chr11:6,672,093...6,681,493
Ensembl chr11:6,672,312...6,681,198 		JBrowse link
G ACTL7A actin like 7A involved_in ISO (MGI:6790748|PMID:32923619) UniProt PMID:32923619 MGI:6790748 NCBI chr12:30,690,891...30,692,636
Ensembl chr12:30,691,018...30,692,325 		JBrowse link
G ACTL9 actin like 9 involved_in ISO (MGI:6515844|PMID:33626338)
(PMID:33626338)		 UniProt PMID:33626338 MGI:6515844 NCBI chr 6:8,045,858...8,047,510
Ensembl chr 6:8,045,910...8,047,160 		JBrowse link
G AGFG1 ArfGAP with FG repeats 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11711676), (PMID:14724135) TreeGrafter
MGI		 PMID:11711676 PMID:14724135 GO_REF:0000118 NCBI chr10:113,500,174...113,589,243
Ensembl chr10:113,500,391...113,582,474 		JBrowse link
G AGFG2 ArfGAP with FG repeats 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:12,647,383...12,674,303
Ensembl chr28:12,646,515...12,674,301 		JBrowse link
G CCDC136 coiled-coil domain containing 136 involved_in ISO (MGI:5816406|PMID:27076447) UniProt PMID:27076447 MGI:5816406 NCBI chr21:97,392,611...97,423,457 JBrowse link
G CCDC136 coiled-coil domain containing 136 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr21:97,405,920...97,423,236 JBrowse link
G CCDC38 coiled-coil domain containing 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:91,252,125...91,319,449
Ensembl chr11:91,252,852...91,301,116 		JBrowse link
G CCDC42 coiled-coil domain containing 42 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26945718) Ensembl
MGI		 PMID:26945718 GO_REF:0000107 NCBI chr16:8,087,741...8,103,964
Ensembl chr16:8,087,943...8,101,960 		JBrowse link
G FABP9 fatty acid binding protein 9 ISO RGD PMID:7958448 RGD:634410 NCBI chr 8:76,873,829...76,880,644
Ensembl chr 8:76,875,871...76,878,997 		JBrowse link
G GARIN1A golgi associated RAB2 interactor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:97,270,312...97,283,137
Ensembl chr21:97,270,993...97,282,963 		JBrowse link
G GARIN1B golgi associated RAB2 interactor 1B involved_in ISO (MGI:6814641|PMID:34714330) UniProt PMID:34714330 MGI:6814641 NCBI chr21:97,307,372...97,331,253
Ensembl chr21:97,314,480...97,329,596 		JBrowse link
G KIAA0319L KIAA0319 like acts_upstream_of_or_within ISO (PMID:29991750) MGI PMID:29991750 NCBI chr20:97,317,057...97,447,004
Ensembl chr20:97,320,211...97,445,917 		JBrowse link
G LOC103234825 PVR cell adhesion molecule involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:38,127,864...38,141,612 JBrowse link
G LOC103243877 protein FAM209B involved_in ISO (MGI:6865809|PMID:34471926) UniProt PMID:34471926 MGI:6865809 NCBI chr 2:7,576,393...7,596,092 JBrowse link
G MFSD14A major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO (PMID:27107036) MGI PMID:27107036 NCBI chr20:33,254,470...33,277,021 JBrowse link
G NECTIN2 nectin cell adhesion molecule 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10733589) Ensembl
MGI
TreeGrafter		 PMID:10733589 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:38,320,791...38,361,419
Ensembl chr 6:38,320,933...38,361,742 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13129914) Ensembl
MGI		 PMID:13129914 GO_REF:0000107 NCBI chr16:2,270,126...2,293,705
Ensembl chr16:2,270,085...2,296,825 		JBrowse link
G PDCL2 phosducin like 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:36278277) Ensembl
MGI		 PMID:36278277 GO_REF:0000107 NCBI chr 7:12,969,993...13,005,120
Ensembl chr 7:12,978,707...13,005,082 		JBrowse link
G PFN4 profilin family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:83,530,834...83,538,704
Ensembl chr14:83,531,482...83,540,305 		JBrowse link
G PLA2G3 phospholipase A2 group III involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20424323) Ensembl
MGI		 PMID:20424323 GO_REF:0000107 NCBI chr19:14,025,373...14,033,214
Ensembl chr19:14,025,742...14,030,643 		JBrowse link
G PLN phospholamban involved_in ISO (MGI:6281843|PMID:30733280) UniProt PMID:30733280 MGI:6281843 NCBI chr13:55,316,962...55,332,502
Ensembl chr13:55,318,326...55,318,481 		JBrowse link
G POC1B POC1 centriolar protein B acts_upstream_of_or_within ISO (PMID:30298696), (PMID:37070736) MGI PMID:30298696 PMID:37070736 NCBI chr11:84,816,486...84,932,237
Ensembl chr11:84,814,509...84,917,953 		JBrowse link
G RFX2 regulatory factor X2 involved_in ISO (MGI:5708804|PMID:26162102) UniProt PMID:26162102 MGI:5708804 NCBI chr 6:5,637,086...5,758,000
Ensembl chr 6:5,636,735...5,738,133 		JBrowse link
G SEC23IP SEC23 interacting protein acts_upstream_of_or_within ISO (PMID:21640725) MGI PMID:21640725 NCBI chr 9:112,685,033...112,734,520
Ensembl chr 9:112,684,885...112,735,082 		JBrowse link
G SLC9A8 solute carrier family 9 member A8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:14,097,312...14,175,002
Ensembl chr 2:14,101,511...14,174,794 		JBrowse link
G SPACA1 sperm acrosome associated 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22949614) Ensembl
MGI
TreeGrafter		 PMID:22949614 GO_REF:0000107 GO_REF:0000118 NCBI chr13:12,536,833...12,553,433
Ensembl chr13:12,537,420...12,553,345 		JBrowse link
G SPINK2 serine peptidase inhibitor Kazal type 2 involved_in ISO (MGI:6114299|PMID:28554943) UniProt PMID:28554943 MGI:6114299 NCBI chr 7:11,850,394...11,862,084 JBrowse link
G SPPL2C signal peptide peptidase like 2C involved_in ISO (MGI:6281843|PMID:30733280), (MGI:7387163|PMID:30733281) UniProt PMID:30733280 PMID:30733281 MGI:6281843 MGI:7387163 NCBI chr16:60,059,144...60,062,178 JBrowse link
G TBC1D20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (PMID:24239381) MGI PMID:24239381 NCBI chr 2:56,065,975...56,093,521
Ensembl chr 2:56,066,042...56,094,333 		JBrowse link
G TBPL1 TATA-box binding protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11861477) Ensembl
MGI		 PMID:11861477 GO_REF:0000107 NCBI chr13:39,487,007...39,523,752
Ensembl chr13:39,483,880...39,522,115 		JBrowse link
G TMF1 TATA element modulatory factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20691678) Ensembl
MGI		 PMID:20691678 GO_REF:0000107 NCBI chr22:30,048,269...30,078,600
Ensembl chr22:30,045,685...30,078,414 		JBrowse link
G TMPRSS12 transmembrane serine protease 12 involved_in ISO (MGI:7277967|PMID:35547804) UniProt PMID:35547804 MGI:7277967 NCBI chr11:47,071,798...47,115,890 JBrowse link
G TXNDC8 thioredoxin domain containing 8 ISO RGD PMID:15181017 RGD:1303999 NCBI chr12:29,215,704...29,250,207 JBrowse link
G VPS13B vacuolar protein sorting 13 homolog B involved_in ISO (MGI:6467831|PMID:31218450) UniProt PMID:31218450 MGI:6467831 NCBI chr 8:93,899,666...94,737,123
Ensembl chr 8:93,901,284...94,735,262 		JBrowse link
G ZPBP zona pellucida binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17664285) TreeGrafter
MGI		 PMID:17664285 GO_REF:0000118 NCBI chr21:8,711,696...8,861,121
Ensembl chr21:8,712,454...8,860,249 		JBrowse link
G ZPBP2 zona pellucida binding protein 2 acts_upstream_of_or_within ISO (PMID:17664285) MGI PMID:17664285 NCBI chr16:66,289,910...66,299,397 JBrowse link
autophagosome-endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RUBCNL rubicon like autophagy enhancer involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:24,400,507...24,445,514
Ensembl chr 3:24,399,500...24,430,601 		JBrowse link
autophagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in ISO (PMID:28325809) UniProt PMID:28325809 NCBI chr22:41,192,458...41,247,048
Ensembl chr22:41,192,484...41,244,822 		JBrowse link
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:115,578,185...115,605,416
Ensembl chr20:115,578,261...115,605,647 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:5698740 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
G DIAPH3 diaphanous related formin 3 acts_upstream_of_or_within ISO (PMID:33036023) MGI PMID:33036023 NCBI chr 3:37,455,326...37,951,237 JBrowse link
G DIAPH3 diaphanous related formin 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 3:37,663,051...37,951,107 JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (MGI:6159303|PMID:29727621) UniProt PMID:29727621 MGI:6159303 NCBI chr 9:22,306,307...22,482,074
Ensembl chr 9:22,306,312...22,481,954 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (MGI:6159303|PMID:29727621) UniProt PMID:29727621 MGI:6159303 NCBI chr16:67,391,786...67,429,560
Ensembl chr16:67,406,981...67,427,691 		JBrowse link
G PLEKHM1 pleckstrin homology and RUN domain containing M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:60,926,006...60,980,359
Ensembl chr16:60,926,063...60,980,669 		JBrowse link
G RUBCNL rubicon like autophagy enhancer involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:24,400,507...24,445,514
Ensembl chr 3:24,399,500...24,430,601 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chr19:18,062,890...18,110,306
Ensembl chr19:18,062,948...18,111,585 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in ISO (PMID:33422265) UniProt PMID:33422265 NCBI chr26:40,787,204...40,834,065
Ensembl chr26:40,801,245...40,834,113 		JBrowse link
G ZNRF1 zinc and ring finger 1 acts_upstream_of ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chr 5:60,568,582...60,590,699 JBrowse link
G ZNRF2 zinc and ring finger 2 acts_upstream_of ISO (PMID:38360932) FlyBase PMID:38360932 NCBI chr21:27,930,382...28,097,754
Ensembl chr21:28,014,791...28,096,703 		JBrowse link
calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DOC2A double C2 domain alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,649,818...26,656,755
Ensembl chr 5:26,651,949...26,656,075 		JBrowse link
G DOC2B double C2 domain beta involved_in ISO PMID:22036572
(PMID:20150444)		 SynGO PMID:20150444 PMID:22036572 RGD:155230732 NCBI chr16:17,890...51,080
Ensembl chr16:19,294...49,309 		JBrowse link
G SYT1 synaptotagmin 1 involved_in ISO (PMID:7954835) SynGO PMID:7954835 NCBI chr11:74,442,890...75,032,756
Ensembl chr11:74,795,207...75,032,915 		JBrowse link
G SYT2 synaptotagmin 2 involved_in ISO (PMID:17192432) SynGO PMID:17192432 NCBI chr25:26,702,627...26,821,108
Ensembl chr25:26,808,007...26,817,314 		JBrowse link
G SYT7 synaptotagmin 7 involved_in ISO (PMID:24267651) SynGO PMID:24267651 NCBI chr 1:12,267,591...12,333,181
Ensembl chr 1:12,267,685...12,333,185 		JBrowse link
G SYT9 synaptotagmin 9 involved_in ISO (PMID:17521570) SynGO PMID:17521570 NCBI chr 1:57,375,933...57,587,370
Ensembl chr 1:57,376,232...57,587,368 		JBrowse link
COPI coating of Golgi vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFGAP2 ADP ribosylation factor GTPase activating protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:18,136,257...18,161,083
Ensembl chr 1:18,136,519...18,148,228 		JBrowse link
G ARFGAP3 ADP ribosylation factor GTPase activating protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:25,339,722...25,401,119
Ensembl chr19:25,339,496...25,400,951 		JBrowse link
G GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 involved_in ISO (PMID:12047556), (PMID:17956946) UniProt PMID:12047556 PMID:17956946 NCBI chr 9:95,281,953...95,416,050
Ensembl chr 9:95,281,954...95,416,086 		JBrowse link
G TMED9 transmembrane p24 trafficking protein 9 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:79,609,832...79,613,960
Ensembl chr23:79,609,826...79,614,084 		JBrowse link
COPI-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TMED10 transmembrane p24 trafficking protein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:52,349,869...52,392,436
Ensembl chr24:52,346,815...52,392,525 		JBrowse link
COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL3 cullin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:110,425,895...110,541,431
Ensembl chr10:110,425,076...110,541,538 		JBrowse link
G KLHL12 kelch like family member 12 involved_in ISO (PMID:22358839), (PMID:27716508) UniProt PMID:22358839 PMID:27716508 NCBI chr25:26,479,798...26,516,293 JBrowse link
G KLHL12 kelch like family member 12 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr25:26,481,992...26,514,345 JBrowse link
G LOC103230534 protein transport protein Sec16B involved_in IEA InterPro GO_REF:0000002 NCBI chr25:51,309,875...51,379,187
Ensembl chr25:51,332,937...51,380,520 		JBrowse link
G LOC103246128 peflin-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:1,880,848...1,884,087
Ensembl chr20:101,235,056...101,240,732 		JBrowse link
G PDCD6 programmed cell death 6 involved_in ISO (PMID:27716508) UniProt PMID:27716508 NCBI chr 4:204,512...215,059
Ensembl chr 4:200,926...214,718 		JBrowse link
G PEF1 penta-EF-hand domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:101,225,397...101,240,694
Ensembl chr20:101,235,056...101,240,732 		JBrowse link
G PREB prolactin regulatory element binding involved_in ISO PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr14:80,485,178...80,489,081
Ensembl chr14:80,485,252...80,488,438 		JBrowse link
G SAR1A secretion associated Ras related GTPase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
G SAR1B secretion associated Ras related GTPase 1B involved_in ISO (PMID:32358066)
(PMID:23433038)		 UniProt PMID:23433038 PMID:32358066 NCBI chr23:37,409,666...37,433,462
Ensembl chr23:37,406,770...37,444,447 		JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in IEA InterPro GO_REF:0000002 NCBI chr12:1,718,520...1,763,562
Ensembl chr12:1,724,838...1,761,941 		JBrowse link
G TFG trafficking from ER to golgi regulator involved_in IEA InterPro GO_REF:0000002 NCBI chr22:80,144,976...80,189,139
Ensembl chr22:80,146,721...80,189,248 		JBrowse link
COPII-coated vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:46,336,909...46,357,435
Ensembl chr22:46,336,829...46,355,723 		JBrowse link
G SEC23A SEC23 homolog A, COPII coat complex component involved_in IEA InterPro GO_REF:0000002 NCBI chr24:15,801,945...15,874,938
Ensembl chr24:15,801,509...15,874,994 		JBrowse link
G SEC23B SEC23 homolog B, COPII coat complex component involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:47,569,734...47,618,229
Ensembl chr 2:47,569,727...47,618,295 		JBrowse link
G VAPA VAMP associated protein A involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:68,784,786...68,825,333
Ensembl chr18:68,784,799...68,827,581 		JBrowse link
G VAPB VAMP associated protein B and C involved_in ISO (PMID:18713837) UniProt PMID:18713837 NCBI chr 2:5,686,294...5,740,855
Ensembl chr 2:5,687,611...5,740,740 		JBrowse link
COPII-coated vesicle cargo loading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIDEB cell death inducing DFFA like effector b involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:1,287,932...1,291,573 JBrowse link
G MIA3 MIA SH3 domain ER export factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:6,901,891...6,954,556
Ensembl chr25:6,902,425...6,954,526 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISO (PMID:17684057) UniProt PMID:17684057 NCBI chr14:41,890,055...41,932,180 JBrowse link
G SAR1A secretion associated Ras related GTPase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
G SAR1B secretion associated Ras related GTPase 1B involved_in ISO (PMID:23433038)
(PMID:32358066), (PMID:33186557)		 UniProt PMID:23433038 PMID:32358066 PMID:33186557 NCBI chr23:37,409,666...37,433,462
Ensembl chr23:37,406,770...37,444,447 		JBrowse link
G SEC13 SEC13 homolog, nuclear pore and COPII coat complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:46,336,909...46,357,435
Ensembl chr22:46,336,829...46,355,723 		JBrowse link
G SEC23A SEC23 homolog A, COPII coat complex component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:15,801,945...15,874,938
Ensembl chr24:15,801,509...15,874,994 		JBrowse link
G SEC23B SEC23 homolog B, COPII coat complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:47,569,734...47,618,229
Ensembl chr 2:47,569,727...47,618,295 		JBrowse link
G SEC24A SEC24 homolog A, COPII coat complex component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:37,448,344...37,501,745 JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:57,363,133...57,463,056
Ensembl chr 7:57,387,167...57,462,276 		JBrowse link
G SEC24C SEC24 homolog C, COPII coat complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:57,600,783...57,628,501
Ensembl chr 9:57,601,863...57,626,038 		JBrowse link
G SEC24D SEC24 homolog D, COPII coat complex component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:66,208,005...66,318,222
Ensembl chr 7:66,207,765...66,318,206 		JBrowse link
G SEC31A SEC31 homolog A, COPII coat complex component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:31,207,349...31,288,484
Ensembl chr 7:31,207,089...31,288,574 		JBrowse link
G SEC31B SEC31 homolog B, COPII coat complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:93,505,655...93,537,525
Ensembl chr 9:93,506,626...93,537,155 		JBrowse link
G SURF4 surfeit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,759,307...4,775,227
Ensembl chr12:4,759,388...4,776,219 		JBrowse link
G TBC1D20 TBC1 domain family member 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:56,065,975...56,093,521
Ensembl chr 2:56,066,042...56,094,333 		JBrowse link
dense core granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAIAP3 BAI1 associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:1,222,994...1,237,823
Ensembl chr 5:1,227,910...1,236,898 		JBrowse link
G PTPRN protein tyrosine phosphatase receptor type N involved_in ISO (PMID:24843546) GO_Central PMID:24843546 NCBI chr10:105,196,508...105,216,665
Ensembl chr10:105,196,505...105,216,525 		JBrowse link
G SNX19 sorting nexin 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24843546) Ensembl
MGI		 PMID:24843546 GO_REF:0000107 NCBI chr 1:121,927,660...121,968,101
Ensembl chr 1:121,930,165...121,968,075 		JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP11 aquaporin 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107722) Ensembl
MGI		 PMID:16107722 GO_REF:0000107 NCBI chr 1:68,805,354...68,824,017
Ensembl chr 1:68,807,025...68,824,792 		JBrowse link
G FASLG Fas ligand ISO RGD PMID:18045865 RGD:2315735 NCBI chr25:56,488,572...56,496,469
Ensembl chr25:56,489,417...56,496,251 		JBrowse link
G RNASEK ribonuclease K involved_in ISO (PMID:26212330) UniProt PMID:26212330 NCBI chr16:6,371,729...6,373,817 JBrowse link
G TMEM9 transmembrane protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:28,230,915...28,266,835
Ensembl chr25:28,246,845...28,267,421 		JBrowse link
endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKFY1 ankyrin repeat and FYVE domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:3,640,550...3,737,390
Ensembl chr16:3,644,499...3,737,346 		JBrowse link
G RAB14 RAB14, member RAS oncogene family involved_in ISO (PMID:20534812) UniProt PMID:20534812 NCBI chr12:18,382,118...18,406,353
Ensembl chr12:18,390,806...18,403,185 		JBrowse link
G RAB4B RAB4B, member RAS oncogene family involved_in ISO (PMID:20534812) UniProt PMID:20534812 NCBI chr 6:35,231,448...35,249,080
Ensembl chr 6:35,231,490...35,251,111 		JBrowse link
G RUFY1 RUN and FYVE domain containing 1 involved_in ISO (PMID:20534812) UniProt PMID:20534812 NCBI chr23:81,260,109...81,326,818
Ensembl chr23:81,269,663...81,330,154 		JBrowse link
G SAMD9 sterile alpha motif domain containing 9 involved_in ISO (PMID:24029230) UniProt PMID:24029230 NCBI chr21:55,895,799...55,913,845
Ensembl chr21:55,907,249...55,912,015 		JBrowse link
G SAMD9L sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) MGI PMID:24029230 NCBI chr21:55,865,869...55,883,593
Ensembl chr21:55,878,526...55,883,280 		JBrowse link
G TGFBRAP1 transforming growth factor beta receptor associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:8,900,342...8,963,107
Ensembl chr14:8,898,587...8,942,148 		JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:21148287) UniProt PMID:21148287 NCBI chr 1:110,440,681...110,455,092
Ensembl chr 1:110,439,933...110,455,844 		JBrowse link
G VPS39 VPS39 subunit of HOPS complex involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:40,787,204...40,834,065
Ensembl chr26:40,801,245...40,834,113 		JBrowse link
G VPS41 VPS41 subunit of HOPS complex involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr21:19,629,271...19,814,360
Ensembl chr21:19,629,282...19,817,649 		JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:58,081,800...58,095,115
Ensembl chr 5:58,082,521...58,095,173 		JBrowse link
G VPS8 VPS8 subunit of CORVET complex involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:4,368,144...4,607,691
Ensembl chr15:4,367,706...4,607,656 		JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CORO1C coronin 1C involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:103,846,783...103,933,283
Ensembl chr11:103,845,292...103,999,993 		JBrowse link
G TMCC1 transmembrane and coiled-coil domain family 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:51,147,855...51,401,619
Ensembl chr22:51,375,793...51,401,626 		JBrowse link
endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKTIP AKT interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:39,283,607...39,295,320
Ensembl chr 5:39,284,308...39,295,284 		JBrowse link
G ANXA8L1 annexin A8-like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:44,330,526...44,346,933 JBrowse link
G ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 involved_in ISO (PMID:20360857) UniProt PMID:20360857 NCBI chr 2:14,947,347...15,058,217
Ensembl chr 2:14,947,351...15,030,772 		JBrowse link
G CC2D1A coiled-coil and C2 domain containing 1A acts_upstream_of_or_within ISO (PMID:26720614) MGI PMID:26720614 NCBI chr 6:12,567,165...12,589,680
Ensembl chr 6:12,567,237...12,589,815 		JBrowse link
G CHMP2B charged multivesicular body protein 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:89,672,043...89,701,801
Ensembl chr22:89,672,022...89,701,897 		JBrowse link
G DNAJC13 DnaJ heat shock protein family (Hsp40) member C13 involved_in IEA InterPro GO_REF:0000002 NCBI chr15:57,727,636...57,846,469
Ensembl chr15:57,726,576...57,846,478 		JBrowse link
G DNM1 dynamin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:9,874,098...9,927,737
Ensembl chr12:9,878,966...9,927,744 		JBrowse link
G EXOC8 exocyst complex component 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:68,594,174...68,599,236
Ensembl chr25:68,596,957...68,599,134 		JBrowse link
G FHIP1B FHF complex subunit HOOK interacting protein 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:58,592,828...58,625,732
Ensembl chr 1:58,592,886...58,626,272 		JBrowse link
G HOOK1 hook microtubule tethering protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:73,137,181...73,198,389
Ensembl chr20:73,133,522...73,198,205 		JBrowse link
G HOOK2 hook microtubule tethering protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:11,452,154...11,464,718
Ensembl chr 6:11,449,026...11,464,622 		JBrowse link
G HOOK3 hook microtubule tethering protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:40,897,108...41,023,068
Ensembl chr 8:40,897,209...41,021,808 		JBrowse link
G LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:63,301,354...63,307,716
Ensembl chr 1:63,301,885...63,307,553 		JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta involved_in ISO (PMID:21224396) UniProt PMID:21224396 NCBI chr 8:92,695,445...92,771,935 JBrowse link
G LAPTM4B lysosomal protein transmembrane 4 beta involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:92,696,195...92,772,076 JBrowse link
G PHETA1 PH domain containing endocytic trafficking adaptor 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr11:106,614,002...106,622,512
Ensembl chr11:106,616,004...106,616,747 		JBrowse link
G PHETA2 PH domain containing endocytic trafficking adaptor 2 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr19:24,608,631...24,616,343
Ensembl chr19:24,614,192...24,614,971 		JBrowse link
G PI4K2A phosphatidylinositol 4-kinase type 2 alpha involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:90,805,197...90,840,047
Ensembl chr 9:90,805,086...90,834,730 		JBrowse link
G PI4K2B phosphatidylinositol 4-kinase type 2 beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:25,085,256...25,118,796
Ensembl chr27:25,083,031...25,118,755 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 ISO RGD PMID:12453151 RGD:2303129 NCBI chr18:38,785,476...38,914,279
Ensembl chr18:38,787,717...38,914,185 		JBrowse link
G PLEKHA3 pleckstrin homology domain containing A3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:64,030,470...64,055,568
Ensembl chr10:64,030,686...64,054,358 		JBrowse link
G PLEKHF1 pleckstrin homology and FYVE domain containing 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:24,732,774...24,743,636
Ensembl chr 6:24,742,024...24,742,863 		JBrowse link
G PLEKHF2 pleckstrin homology and FYVE domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:90,099,946...90,123,573
Ensembl chr 8:90,120,929...90,121,678 		JBrowse link
G PLEKHJ1 pleckstrin homology domain containing J1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:2,031,245...2,034,791
Ensembl chr 6:2,031,650...2,034,324 		JBrowse link
G RAB22A RAB22A, member RAS oncogene family involved_in ISO (PMID:11870209) UniProt PMID:11870209 NCBI chr 2:5,761,037...5,820,531
Ensembl chr 2:5,768,840...5,820,492 		JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in ISO PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr15:64,678,910...64,715,228
Ensembl chr15:64,682,723...64,713,928 		JBrowse link
G RAB5B RAB5B, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) MGI PMID:7789520 NCBI chr11:51,912,417...51,933,862
Ensembl chr11:51,926,016...51,931,356 		JBrowse link
G RAB5C RAB5C, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:7789520) MGI PMID:7789520 NCBI chr16:64,115,658...64,142,905
Ensembl chr16:64,115,059...64,143,207 		JBrowse link
G RNF26 ring finger protein 26 involved_in ISO (PMID:27368102) UniProt PMID:27368102 NCBI chr 1:110,713,453...110,716,281
Ensembl chr 1:110,714,081...110,715,379 		JBrowse link
G SNX10 sorting nexin 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:31,999,253...32,044,967
Ensembl chr21:31,998,277...32,081,843 		JBrowse link
G SNX33 sorting nexin 33 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:7,776,989...7,787,873
Ensembl chr26:7,778,390...7,786,591 		JBrowse link
G SQSTM1 sequestosome 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:81,536,271...81,571,061
Ensembl chr23:81,558,082...81,574,830 		JBrowse link
G STX6 syntaxin 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668490) Ensembl
MGI		 PMID:14668490 GO_REF:0000107 NCBI chr25:48,380,359...48,427,279
Ensembl chr25:48,397,712...48,426,676 		JBrowse link
G TMEM127 transmembrane protein 127 acts_upstream_of_or_within ISO (PMID:24334765) MGI PMID:24334765 NCBI chr14:671,259...685,217
Ensembl chr14:673,375...685,228 		JBrowse link
G USP50 ubiquitin specific peptidase 50 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr26:32,786,271...32,792,010 JBrowse link
G USP8 ubiquitin specific peptidase 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:32,829,627...32,906,493
Ensembl chr26:32,829,523...32,866,073 		JBrowse link
G VPS11 VPS11 core subunit of CORVET and HOPS complexes involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:110,440,681...110,455,092
Ensembl chr 1:110,439,933...110,455,844 		JBrowse link
G VPS18 VPS18 core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668490) TreeGrafter
MGI		 PMID:14668490 GO_REF:0000118 NCBI chr26:42,091,348...42,100,264
Ensembl chr26:42,088,938...42,100,243 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,838,289...8,862,914
Ensembl chr29:8,838,735...8,862,977 		JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26720614) Ensembl
MGI		 PMID:26720614 GO_REF:0000107 NCBI chr 5:58,081,800...58,095,115
Ensembl chr 5:58,082,521...58,095,173 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26720614)
(PMID:10637304)		 Ensembl
MGI		 PMID:10637304 PMID:26720614 GO_REF:0000107 NCBI chr18:16,336,959...16,370,208
Ensembl chr18:16,336,921...16,370,291 		JBrowse link
G WASHC1 WASH complex subunit 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:20175130)
(PMID:26965651)		 UniProt
MGI		 PMID:20175130 PMID:26965651 NCBI chr11:10,075...27,633
Ensembl chr11:8,116...22,842 		JBrowse link
G WASHC4 WASH complex subunit 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:100,333,806...100,395,930
Ensembl chr11:100,333,912...100,398,713 		JBrowse link
G WASHC5 WASH complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:119,612,921...119,679,058
Ensembl chr 8:119,611,210...119,668,885 		JBrowse link
extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD34 CD34 molecule involved_in ISO (PMID:21835908) UniProt PMID:21835908 NCBI chr25:21,534,969...21,559,951
Ensembl chr25:21,534,983...21,561,215 		JBrowse link
Golgi vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOLPH3 golgi phosphoprotein 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:31,408,297...31,461,539
Ensembl chr 4:31,409,386...31,461,547 		JBrowse link
G GOLPH3L golgi phosphoprotein 3 like involved_in IEA TreeGrafter GO_REF:0000118
G MYO18A myosin XVIIIA involved_in ISO (PMID:19837035) UniProt PMID:19837035 NCBI chr16:22,836,856...22,942,366 JBrowse link
G MYO18A myosin XVIIIA involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:22,836,604...22,902,559 JBrowse link
G PRKCI protein kinase C iota ISO RGD PMID:12871960 RGD:724652 NCBI chr15:19,103,682...19,180,689 JBrowse link
Golgi vesicle fusion to target membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKD2 NKD inhibitor of WNT signaling pathway 2 involved_in ISO (PMID:17553928) BHF-UCL PMID:17553928 NCBI chr 4:857,938...884,840
Ensembl chr 4:858,809...884,758 		JBrowse link
G RAB12 RAB12, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:67,572,529...67,600,646
Ensembl chr18:67,572,519...67,601,428 		JBrowse link
G RAB13 RAB13, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr20:9,832,205...9,837,902 JBrowse link
G RAB8A RAB8A, member RAS oncogene family involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:14,611,938...14,634,086
Ensembl chr 6:14,611,868...14,634,487 		JBrowse link
G RAB8B RAB8B, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:20,275,555...20,354,298
Ensembl chr26:20,275,258...20,354,202 		JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RILP Rab interacting lysosomal protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,317,116...1,321,481
Ensembl chr16:1,317,413...1,320,678 		JBrowse link
G SNX3 sorting nexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:65,590,413...65,640,368
Ensembl chr13:65,589,801...65,640,876 		JBrowse link
maintenance of granzyme B location in T cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRGN serglycin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,217,836...62,235,110
Ensembl chr 9:62,217,525...62,235,238 		JBrowse link
maintenance of protease location in mast cell secretory granule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRGN serglycin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,217,836...62,235,110
Ensembl chr 9:62,217,525...62,235,238 		JBrowse link
mast cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (PMID:624833) MGI PMID:624833 NCBI chr25:72,827,997...73,048,645
Ensembl chr25:72,828,006...72,991,970 		JBrowse link
G SRGN serglycin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,217,836...62,235,110
Ensembl chr 9:62,217,525...62,235,238 		JBrowse link
melanosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCB6 ATP binding cassette subfamily B member 6 (LAN blood group) involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:105,113,729...105,122,948
Ensembl chr10:105,112,797...105,122,358 		JBrowse link
G HPS1 HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:91,575,408...91,606,514
Ensembl chr 9:91,576,600...91,604,972 		JBrowse link
G HPS4 HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr19:9,356,868...9,387,847
Ensembl chr19:9,356,145...9,386,254 		JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in ISO (PMID:23084991)
(PMID:22511774)		 UniProt
ParkinsonsUK-UCL		 PMID:22511774 PMID:23084991 NCBI chr13:25,265,831...25,281,106 JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:79,256,996...79,316,967
Ensembl chr 1:79,256,835...79,316,789 		JBrowse link
melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1M1 adaptor related protein complex 1 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:14,704,940...14,743,627
Ensembl chr 6:14,705,089...14,743,702 		JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11452004), (PMID:19841138)
(PMID:9931340)		 UniProt
MGI		 PMID:9931340 PMID:11452004 PMID:19841138 NCBI chr 4:72,225,658...72,524,971
Ensembl chr 4:72,225,599...72,524,933 		JBrowse link
G APOE apolipoprotein E involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:38,377,154...38,381,219
Ensembl chr 6:38,376,887...38,381,438 		JBrowse link
G ASIP agouti signaling protein acts_upstream_of_or_within ISO (PMID:9548375) MGI PMID:9548375 NCBI chr 2:38,479,328...38,568,756 JBrowse link
G ASIP agouti signaling protein involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 2:38,480,960...38,562,339 JBrowse link
G BACE2 beta-secretase 2 involved_in ISO (PMID:23754390)
(MGI:5495053|PMID:23754390)		 UniProt PMID:23754390 MGI:5495053 NCBI chr 2:85,079,404...85,194,908
Ensembl chr 2:85,079,812...85,187,944 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within ISO (PMID:15265785) MGI PMID:15265785 NCBI chr 6:38,623,639...38,642,217
Ensembl chr 6:38,639,659...38,640,261 		JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 acts_upstream_of_or_within ISO (PMID:11110696) MGI PMID:11110696 NCBI chr27:42,836,231...42,837,514
Ensembl chr27:42,836,366...42,837,016 		JBrowse link
G GPR143 G protein-coupled receptor 143 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:8,178,818...8,223,291
Ensembl chr  X:8,179,154...8,222,603 		JBrowse link
G KIF13A kinesin family member 13A involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:54,156,948...54,389,141
Ensembl chr17:54,156,969...54,390,502 		JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (PMID:4634048)
(PMID:16518687)		 MGI PMID:4634048 PMID:16518687 NCBI chr25:72,827,997...73,048,645
Ensembl chr25:72,828,006...72,991,970 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:94,051,096...94,144,968
Ensembl chr10:94,056,923...94,145,268 		JBrowse link
G PMEL premelanosome protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:51,892,131...51,905,073
Ensembl chr11:51,887,730...51,904,324 		JBrowse link
G SHROOM2 shroom family member 2 involved_in ISO (MGI:3710716|PMID:16987870) UniProt PMID:16987870 MGI:3710716 NCBI chr  X:8,242,714...8,405,051
Ensembl chr  X:8,345,056...8,405,552 		JBrowse link
G TYRP1 tyrosinase related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9548375) TreeGrafter
MGI		 PMID:9548375 GO_REF:0000118 NCBI chr12:66,841,867...66,861,730
Ensembl chr12:66,842,926...66,859,842 		JBrowse link
multivesicular body assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB11A RAB11A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:17,682,629...17,702,325
Ensembl chr26:17,682,874...17,702,309 		JBrowse link
G TSG101 tumor susceptibility 101 involved_in IEA UniProt GO_REF:0000117 NCBI chr 1:46,401,889...46,451,122
Ensembl chr 1:46,402,024...46,450,916 		JBrowse link
G VPS28 VPS28 subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:138,636,092...138,641,011 JBrowse link
G VPS37A VPS37A subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000117 NCBI chr 8:15,333,570...15,384,451
Ensembl chr 8:15,333,557...15,374,678 		JBrowse link
G VPS37B VPS37B subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000117 NCBI chr11:118,205,062...118,235,844
Ensembl chr11:118,205,002...118,235,768 		JBrowse link
G VPS37C VPS37C subunit of ESCRT-I involved_in IEA UniProt GO_REF:0000117 NCBI chr 1:12,686,887...12,717,335
Ensembl chr 1:12,686,708...12,717,365 		JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:58,081,800...58,095,115
Ensembl chr 5:58,082,521...58,095,173 		JBrowse link
G VPS4B vacuolar protein sorting 4 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:16,336,959...16,370,208
Ensembl chr18:16,336,921...16,370,291 		JBrowse link
multivesicular body organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB27A RAB27A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,140,972...28,227,847
Ensembl chr26:28,197,464...28,227,963 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHMP3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) ParkinsonsUK-UCL PMID:16554368 NCBI chr14:20,536,490...20,654,761
Ensembl chr14:20,594,817...20,654,404 		JBrowse link
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INSIG1 insulin induced gene 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:123,448,614...123,460,778
Ensembl chr21:123,449,106...123,460,807 		JBrowse link
G SAR1A secretion associated Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:23580231) MGI PMID:23580231 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRKN parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:26911690) ParkinsonsUK-UCL PMID:26911690 NCBI chr13:88,856,056...90,329,379 JBrowse link
negative regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD27 ankyrin repeat domain 27 involved_in ISO (PMID:24856514) UniProt PMID:24856514 NCBI chr 6:27,645,474...27,724,829
Ensembl chr 6:27,644,597...27,724,819 		JBrowse link
G PRRT2 proline rich transmembrane protein 2 involved_in ISO (MGI:6114881|PMID:29056747) UniProt PMID:29056747 MGI:6114881 NCBI chr 5:26,838,280...26,841,918
Ensembl chr 5:26,839,454...26,841,916 		JBrowse link
G TRIM9 tripartite motif containing 9 ISO RGD PMID:11524423 RGD:631246 NCBI chr24:28,060,365...28,202,708
Ensembl chr24:28,068,601...28,185,269 		JBrowse link
negative regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CORO1A coronin 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24270184) Ensembl
MGI		 PMID:24270184 GO_REF:0000107 NCBI chr 5:26,482,269...26,488,537
Ensembl chr 5:26,480,753...26,487,929 		JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:20688915 ParkinsonsUK-UCL
RGD		 PMID:18508778 PMID:20688915 RGD:11535104 RGD:7241021 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007 		JBrowse link
G TBC1D4 TBC1 domain family member 4 ISO RGD PMID:21454690 RGD:7247577 NCBI chr 3:54,384,597...54,588,842
Ensembl chr 3:54,386,342...54,464,531 		JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CORO1A coronin 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,482,269...26,488,537
Ensembl chr 5:26,480,753...26,487,929 		JBrowse link
G LOC103247472 sushi repeat containing protein X-linked acts_upstream_of_or_within ISO (PMID:19368996) MGI PMID:19368996
G MYO7A myosin VIIA acts_upstream_of_or_within ISO (PMID:12743369) MGI PMID:12743369 NCBI chr 1:68,334,781...68,423,215
Ensembl chr 1:68,350,598...68,425,625 		JBrowse link
G P2RX7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:11544318) MGI PMID:11544318 NCBI chr11:116,505,975...116,560,151
Ensembl chr11:116,529,346...116,563,059 		JBrowse link
G SRPX sushi repeat containing protein X-linked involved_in IEA TreeGrafter GO_REF:0000118
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:5698740 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in ISO (PMID:21802320) UniProt PMID:21802320 NCBI chr22:41,192,458...41,247,048
Ensembl chr22:41,192,484...41,244,822 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:5698740|PMID:26450516) UniProt PMID:26450516 MGI:5698740 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
G DNAJC27 DnaJ heat shock protein family (Hsp40) member C27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:82,695,889...82,725,142
Ensembl chr14:82,695,850...82,720,956 		JBrowse link
G LOC103246503 endosomal/lysosomal potassium channel TMEM175 involved_in ISO (MGI:5693670|PMID:26317472) UniProt PMID:26317472 MGI:5693670 NCBI chr27:47,819,512...47,852,455
Ensembl chr27:47,816,482...47,852,472 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:94,051,096...94,144,968
Ensembl chr10:94,056,923...94,145,268 		JBrowse link
G PLA2G5 phospholipase A2 group V involved_in ISO (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chr20:112,465,341...112,487,082
Ensembl chr20:112,464,033...112,487,089 		JBrowse link
G RAB20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chr 3:88,769,676...88,803,384
Ensembl chr 3:88,770,271...88,803,177 		JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:23,572,001...23,579,881
Ensembl chr25:23,572,542...23,577,695 		JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:25,265,831...25,281,106 JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:22,482,012...22,486,159
Ensembl chr16:22,481,747...22,485,186 		JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:79,256,996...79,316,967
Ensembl chr 1:79,256,835...79,316,789 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:99,353,125...99,388,429
Ensembl chr 1:99,353,210...99,387,262 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:52,231,481...52,309,276
Ensembl chr22:52,230,835...52,309,306 		JBrowse link
G RAB7B RAB7B, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:23,341,090...23,367,414
Ensembl chr25:23,341,490...23,367,398 		JBrowse link
G SYT7 synaptotagmin 7 involved_in ISO (MGI:3690533|PMID:16982801) UniProt PMID:16982801 MGI:3690533 NCBI chr 1:12,267,591...12,333,181
Ensembl chr 1:12,267,685...12,333,185 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:26284655) MGI PMID:26284655 NCBI chr26:38,386,000...38,482,236 JBrowse link
pigment granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (PMID:8758925) MGI PMID:8758925 NCBI chr18:16,440,560...16,643,187
Ensembl chr18:16,441,733...16,637,895 		JBrowse link
G LYST lysosomal trafficking regulator acts_upstream_of_or_within ISO (PMID:1278263) MGI PMID:1278263 NCBI chr25:72,827,997...73,048,645
Ensembl chr25:72,828,006...72,991,970 		JBrowse link
platelet alpha granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NBEAL2 neurobeachin like 2 acts_upstream_of_or_within ISO (PMID:25258341)
(PMID:23861251), (PMID:23863626)		 MGI PMID:23861251 PMID:23863626 PMID:25258341 NCBI chr22:8,385,109...8,414,553
Ensembl chr22:8,385,229...8,414,655 		JBrowse link
G VPS33B VPS33B late endosome and lysosome associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,838,289...8,862,914
Ensembl chr29:8,838,735...8,862,977 		JBrowse link
G ZNF385A zinc finger protein 385A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11927637) Ensembl
MGI		 PMID:11927637 GO_REF:0000107 NCBI chr11:50,483,974...50,507,178
Ensembl chr11:50,483,666...50,507,233 		JBrowse link
platelet dense granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA1 ATP binding cassette subfamily A member 1 involved_in ISO (PMID:15163665) BHF-UCL PMID:15163665 NCBI chr12:34,587,123...34,734,936
Ensembl chr12:34,587,118...34,731,642 		JBrowse link
G AP3B1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO (PMID:9931340) MGI PMID:9931340 NCBI chr 4:72,225,658...72,524,971
Ensembl chr 4:72,225,599...72,524,933 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 acts_upstream_of_or_within ISO (PMID:15265785) MGI PMID:15265785 NCBI chr 6:38,623,639...38,642,217
Ensembl chr 6:38,639,659...38,640,261 		JBrowse link
G DTNBP1 dystrobrevin binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1936982) Ensembl
MGI
TreeGrafter		 PMID:1936982 GO_REF:0000107 GO_REF:0000118 NCBI chr17:56,500,523...56,650,925
Ensembl chr17:56,500,574...56,651,491 		JBrowse link
G RAB38 RAB38, member RAS oncogene family ISO RGD PMID:18983523 RGD:2324691 NCBI chr 1:79,256,996...79,316,967
Ensembl chr 1:79,256,835...79,316,789 		JBrowse link
G SLC35D3 solute carrier family 35 member D3 involved_in ISO (MGI:3801266|PMID:17062724), (MGI:5444075|PMID:22611153) UniProt PMID:17062724 PMID:22611153 MGI:3801266 MGI:5444075 NCBI chr13:36,475,017...36,478,506
Ensembl chr13:36,475,981...36,478,292 		JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYNJ1 synaptojanin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:59,421,561...59,523,076
Ensembl chr 2:59,422,110...59,523,176 		JBrowse link
positive regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDCD6IP programmed cell death 6 interacting protein involved_in ISO (PMID:22660413) UniProt PMID:22660413 NCBI chr15:78,265,099...78,339,307
Ensembl chr15:78,265,252...78,339,873 		JBrowse link
G SDC1 syndecan 1 involved_in ISO (PMID:22660413) UniProt PMID:22660413 NCBI chr14:87,499,732...87,523,122
Ensembl chr14:87,499,574...87,525,026 		JBrowse link
G SDC4 syndecan 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:18,490,474...18,513,329
Ensembl chr 2:18,490,485...18,513,332 		JBrowse link
G SDCBP syndecan binding protein involved_in ISO (PMID:22660413) UniProt PMID:22660413 NCBI chr 8:54,536,286...54,565,884 JBrowse link
positive regulation of secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCG1 ATP binding cassette subfamily G member 1 ISO RGD PMID:29540530 RGD:41404656 NCBI chr 2:86,098,818...86,176,101
Ensembl chr 2:86,099,414...86,179,949 		JBrowse link
G OSBP oxysterol binding protein ISO RGD PMID:29540530 RGD:41404656 NCBI chr 1:14,009,735...14,053,232
Ensembl chr 1:14,010,020...14,051,605 		JBrowse link
G PTBP1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chr 6:546,010...560,086
Ensembl chr 6:545,964...562,630 		JBrowse link
positive regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNCA synuclein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,083,154...38,194,068
Ensembl chr 7:38,081,509...38,191,479 		JBrowse link
positive regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA1 annexin A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:84,207,818...84,226,438
Ensembl chr12:84,207,820...84,226,562 		JBrowse link
G ANXA2 annexin A2 involved_in ISO (PMID:2138016) UniProt PMID:2138016 NCBI chr26:23,100,000...23,147,687
Ensembl chr26:23,099,992...23,145,457 		JBrowse link
G C2CD5 C2 calcium dependent domain containing 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:22,267,508...22,362,927
Ensembl chr11:22,267,415...22,362,969 		JBrowse link
G DOC2B double C2 domain beta involved_in ISO PMID:18596155 UniProt PMID:18596155 RGD:8554556 NCBI chr16:17,890...51,080
Ensembl chr16:19,294...49,309 		JBrowse link
G KIF5B kinesin family member 5B ISO RGD PMID:24203699 RGD:11059541 NCBI chr 9:31,321,615...31,369,549
Ensembl chr 9:31,320,549...31,369,519 		JBrowse link
G PLA2G4A phospholipase A2 group IVA ISO RGD PMID:17148545 RGD:1642447 NCBI chr25:42,443,480...42,590,895
Ensembl chr25:42,443,385...42,590,431 		JBrowse link
G SYT1 synaptotagmin 1 involved_in ISO PMID:20688915 RGD
ParkinsonsUK-UCL		 PMID:18508778 PMID:20688915 RGD:11535104 RGD:7241021 NCBI chr11:74,442,890...75,032,756
Ensembl chr11:74,795,207...75,032,915 		JBrowse link
G SYT3 synaptotagmin 3 ISO RGD PMID:18508778 RGD:7241021 NCBI chr 6:43,678,535...43,698,347
Ensembl chr 6:43,677,790...43,697,766 		JBrowse link
proacrosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIAA0319L KIAA0319 like acts_upstream_of_or_within ISO (PMID:29991750) MGI PMID:29991750 NCBI chr20:97,317,057...97,447,004
Ensembl chr20:97,320,211...97,445,917 		JBrowse link
G SOX30 SRY-box transcription factor 30 involved_in ISO (MGI:6191912|PMID:29866902) UniProt PMID:29866902 MGI:6191912 NCBI chr23:60,013,384...60,038,682
Ensembl chr23:60,014,046...60,037,997 		JBrowse link
regulation of calcium-dependent activation of synaptic vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CACNA1B calcium voltage-gated channel subunit alpha1 B involved_in ISO PMID:7832825 SynGO PMID:7832825 RGD:13792530 NCBI chr12:75,441...335,980
Ensembl chr12:78,011...335,820 		JBrowse link
G ERC1 ELKS/RAB6-interacting/CAST family member 1 involved_in ISO (PMID:25209271) SynGO PMID:25209271 NCBI chr11:989,376...1,530,470
Ensembl chr11:1,030,294...1,524,817 		JBrowse link
G ERC2 ELKS/RAB6-interacting/CAST family member 2 involved_in ISO (PMID:25209271) SynGO PMID:25209271 NCBI chr22:16,851,862...17,817,504
Ensembl chr22:17,034,445...17,817,522 		JBrowse link
G PRRT2 proline rich transmembrane protein 2 involved_in ISO (PMID:27052163) SynGO PMID:27052163 NCBI chr 5:26,838,280...26,841,918
Ensembl chr 5:26,839,454...26,841,916 		JBrowse link
G RIMBP2 RIMS binding protein 2 involved_in ISO (PMID:27671655) SynGO PMID:27671655 NCBI chr11:125,770,331...126,170,664 JBrowse link
G RIMS1 regulating synaptic membrane exocytosis 1 involved_in ISO (PMID:21241895) SynGO PMID:21241895 NCBI chr17:2,690,430...3,176,794
Ensembl chr17:2,690,418...3,176,738 		JBrowse link
G RIMS2 regulating synaptic membrane exocytosis 2 involved_in ISO (PMID:21241895) SynGO PMID:21241895 NCBI chr 8:98,354,271...99,097,457
Ensembl chr 8:98,354,131...99,097,577 		JBrowse link
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAR1A secretion associated Ras related GTPase 1A acts_upstream_of_or_within ISO (PMID:19966784) MGI PMID:19966784 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19966784) Ensembl
MGI		 PMID:19966784 GO_REF:0000107 NCBI chr 7:57,363,133...57,463,056
Ensembl chr 7:57,387,167...57,462,276 		JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103217211 prolactin regulatory element-binding protein-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr10:50,173,637...50,175,528 JBrowse link
G MAPK15 mitogen-activated protein kinase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:137,932,291...137,938,392
Ensembl chr 8:137,932,364...137,938,626 		JBrowse link
G PREB prolactin regulatory element binding involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr14:80,485,178...80,489,081
Ensembl chr14:80,485,252...80,488,438 		JBrowse link
G SAR1A secretion associated Ras related GTPase 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:61,134,657...61,154,551
Ensembl chr 9:61,144,503...61,154,226 		JBrowse link
G SAR1B secretion associated Ras related GTPase 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:37,409,666...37,433,462
Ensembl chr23:37,406,770...37,444,447 		JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:17005010) UniProt PMID:17005010 NCBI chr12:1,718,520...1,763,562
Ensembl chr12:1,724,838...1,761,941 		JBrowse link
regulation of endosomal vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPHK1 sphingosine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:45,290,147...45,295,175
Ensembl chr16:45,290,421...45,293,128 		JBrowse link
regulation of endosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TOM1 target of myb1 membrane trafficking protein involved_in ISO (PMID:25588840) UniProt PMID:25588840 NCBI chr19:18,062,890...18,110,306
Ensembl chr19:18,062,948...18,111,585 		JBrowse link
regulation of extracellular exosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDCD6IP programmed cell death 6 interacting protein involved_in ISO (PMID:24105262) UniProt PMID:24105262 NCBI chr15:78,265,099...78,339,307
Ensembl chr15:78,265,252...78,339,873 		JBrowse link
G STAM signal transducing adaptor molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:17,590,252...17,662,278
Ensembl chr 9:17,590,268...17,663,986 		JBrowse link
G TSG101 tumor susceptibility 101 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:46,401,889...46,451,122
Ensembl chr 1:46,402,024...46,450,916 		JBrowse link
regulation of melanosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GPR143 G protein-coupled receptor 143 involved_in ISO (MGI:3813974|PMID:18697795) UniProt PMID:18697795 MGI:3813974 NCBI chr  X:8,178,818...8,223,291
Ensembl chr  X:8,179,154...8,222,603 		JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:5574413|PMID:24769727) BHF-UCL PMID:24769727 MGI:5574413 NCBI chr10:29,732,934...29,864,157
Ensembl chr10:29,729,305...29,864,205 		JBrowse link
regulation of SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEPTIN8 septin 8 involved_in ISO PMID:19196426 UniProt PMID:19196426 RGD:13702278 NCBI chr23:35,567,687...35,595,051
Ensembl chr23:35,567,347...35,594,588 		JBrowse link
G STXBP6 syntaxin binding protein 6 involved_in IEA InterPro GO_REF:0000002 NCBI chr24:1,761,659...2,012,533
Ensembl chr24:1,758,660...2,012,322 		JBrowse link
regulation of synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC2A4 solute carrier family 2 member 4 involved_in ISO PMID:28111082 SynGO PMID:28111082 RGD:13702195 NCBI chr16:6,654,626...6,660,640
Ensembl chr16:6,654,608...6,661,495 		JBrowse link
regulation of synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CPLX1 complexin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:47,959,109...48,002,338
Ensembl chr27:47,959,091...48,002,527 		JBrowse link
G CPLX2 complexin 2 involved_in ISO (PMID:11163241) SynGO PMID:11163241 NCBI chr23:77,943,553...78,031,083
Ensembl chr23:78,025,798...78,027,094 		JBrowse link
G CPLX3 complexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:8,640,661...8,649,510
Ensembl chr26:8,641,551...8,645,155 		JBrowse link
G GRIK5 glutamate ionotropic receptor kainate type subunit 5 acts_upstream_of_or_within ISO (PMID:12533602) MGI PMID:12533602 NCBI chr 6:36,199,358...36,273,355
Ensembl chr 6:36,199,349...36,269,591 		JBrowse link
G RAB3A RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11359932) Ensembl
MGI
TreeGrafter		 PMID:11359932 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:16,671,388...16,678,780
Ensembl chr 6:16,670,431...16,678,644 		JBrowse link
G VAMP1 vesicle associated membrane protein 1 involved_in ISO (PMID:21282288) SynGO PMID:21282288 NCBI chr11:6,510,717...6,520,429 JBrowse link
regulation of synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLC9A6 solute carrier family 9 member A6 involved_in ISO PMID:33372133 SynGO PMID:33372133 RGD:405650253 NCBI chr  X:110,997,985...111,060,164
Ensembl chr  X:110,998,281...111,060,252 		JBrowse link
regulation of vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLAMF1 signaling lymphocytic activation molecule family member 1 acts_upstream_of_or_within ISO (PMID:22493499) MGI PMID:22493499 NCBI chr20:3,282,862...3,320,943
Ensembl chr20:3,282,774...3,322,926 		JBrowse link
G STXBP1 syntaxin binding protein 1 ISO RGD PMID:24532794 RGD:12903988 NCBI chr12:10,440,061...10,519,798
Ensembl chr12:10,439,801...10,519,777 		JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:20303854
(MGI:3836866|PMID:19136969)		 ParkinsonsUK-UCL PMID:19136969 PMID:20303854 MGI:3836866 RGD:11541109 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007 		JBrowse link
secretory granule maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYT4 synaptotagmin 4 involved_in ISO PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007 		JBrowse link
secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18511498) Ensembl
MGI		 PMID:18511498 GO_REF:0000107 NCBI chr21:27,456,553...27,473,196
Ensembl chr21:27,456,259...27,470,728 		JBrowse link
G CREB1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO (PMID:21408140) MGI PMID:21408140 NCBI chr10:93,316,774...93,395,187
Ensembl chr10:93,316,840...93,388,832 		JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO (PMID:11889581) MGI PMID:11889581 NCBI chr 2:78,500,755...78,557,275
Ensembl chr 2:78,503,317...78,503,757 		JBrowse link
G MTA1 metastasis associated 1 involved_in ISO PMID:10933808 UniProt PMID:10933808 RGD:8554658 NCBI chr24:83,315,917...83,368,746 JBrowse link
G SERPINE2 serpin family E member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16319172) RGD
MGI
Ensembl		 PMID:16319172 GO_REF:0000107 RGD:2317924 NCBI chr10:109,921,619...109,988,137
Ensembl chr10:109,921,598...109,987,513 		JBrowse link
G SRGN serglycin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:62,217,836...62,235,110
Ensembl chr 9:62,217,525...62,235,238 		JBrowse link
SNARE complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLTRN collectrin, amino acid transport regulator involved_in ISO (PMID:16330323) GO_Central PMID:16330323 NCBI chr  X:14,103,046...14,154,936
Ensembl chr  X:14,102,497...14,154,123 		JBrowse link
G LOC103221223 vesicle-associated membrane protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:12,164,561...12,165,161 JBrowse link
G SNAP25 synaptosome associated protein 25 involved_in ISO PMID:9671503
PMID:12680753		 CAFA PMID:9671503 PMID:12680753 RGD:12793015 RGD:12793053 NCBI chr 2:27,857,093...27,944,487
Ensembl chr 2:27,858,319...27,944,496 		JBrowse link
G SNCA synuclein alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,083,154...38,194,068
Ensembl chr 7:38,081,509...38,191,479 		JBrowse link
G STX1A syntaxin 1A involved_in ISO PMID:9671503
PMID:12680753		 CAFA PMID:9671503 PMID:12680753 RGD:12793015 RGD:12793053 NCBI chr28:9,347,495...9,367,948
Ensembl chr28:9,347,532...9,368,585 		JBrowse link
G STX4 syntaxin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:27,725,121...27,734,442
Ensembl chr 5:27,724,495...27,732,736 		JBrowse link
G STXBP1 syntaxin binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,440,061...10,519,798
Ensembl chr12:10,439,801...10,519,777 		JBrowse link
G STXBP6 syntaxin binding protein 6 acts_upstream_of ISO (PMID:12145319) ParkinsonsUK-UCL PMID:12145319 NCBI chr24:1,761,659...2,012,533
Ensembl chr24:1,758,660...2,012,322 		JBrowse link
G UVRAG UV radiation resistance associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24550300) Ensembl
MGI
TreeGrafter		 PMID:24550300 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:67,032,575...67,353,207
Ensembl chr 1:67,032,436...67,353,166 		JBrowse link
G VAMP1 vesicle associated membrane protein 1 involved_in ISO (MGI:5567905|PMID:21151919) BHF-UCL PMID:21151919 MGI:5567905 NCBI chr11:6,510,717...6,520,429 JBrowse link
G VAMP2 vesicle associated membrane protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:7,539,098...7,542,466 JBrowse link
G VAMP3 vesicle associated membrane protein 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:123,973,672...123,984,230
Ensembl chr20:123,971,992...123,984,187 		JBrowse link
G VAMP4 vesicle associated membrane protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:57,381,143...57,421,886
Ensembl chr25:57,384,757...57,421,893 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO (MGI:5567905|PMID:21151919) BHF-UCL PMID:21151919 MGI:5567905 NCBI chr  X:129,937,026...129,984,071
Ensembl chr  X:129,937,046...129,984,119 		JBrowse link
G VAMP8 vesicle associated membrane protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:21,575,057...21,580,054
Ensembl chr14:21,575,161...21,579,820 		JBrowse link
synaptic vesicle budding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARF1 ADP ribosylation factor 1 ISO RGD PMID:9590176 RGD:9684955 NCBI chr25:1,628,836...1,644,502
Ensembl chr25:1,628,751...1,644,499 		JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP1G1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO PMID:22539861 SynGO PMID:22539861 RGD:12050120 NCBI chr 5:54,850,831...54,944,915
Ensembl chr 5:54,850,694...54,944,900 		JBrowse link
G AP1S2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) SynGO PMID:20203623 NCBI chr  X:14,283,175...14,310,453 JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:1,901,669...1,951,352
Ensembl chr 6:1,901,507...1,951,314 		JBrowse link
synaptic vesicle budding from presynaptic endocytic zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNM1 dynamin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:9,874,098...9,927,737
Ensembl chr12:9,878,966...9,927,744 		JBrowse link
G DNM3 dynamin 3 involved_in ISO (MGI:5285027|PMID:21689597) SynGO PMID:21689597 MGI:5285027 NCBI chr25:56,735,877...57,285,557
Ensembl chr25:56,746,215...57,285,498 		JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:77,214,391...77,325,626
Ensembl chr 1:77,213,836...77,324,875 		JBrowse link
G SNAP91 synaptosome associated protein 91 involved_in ISO (MGI:5707086|PMID:26412491) SynGO PMID:26412491 MGI:5707086 NCBI chr13:8,221,601...8,374,205 JBrowse link
synaptic vesicle fusion to presynaptic active zone membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRRT2 proline rich transmembrane protein 2 involved_in ISO (MGI:5792766|PMID:27052163) UniProt PMID:27052163 MGI:5792766 NCBI chr 5:26,838,280...26,841,918
Ensembl chr 5:26,839,454...26,841,916 		JBrowse link
G SNAP23 synaptosome associated protein 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:40,443,478...40,485,211
Ensembl chr26:40,442,615...40,482,346 		JBrowse link
G SNAP25 synaptosome associated protein 25 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:27,857,093...27,944,487
Ensembl chr 2:27,858,319...27,944,496 		JBrowse link
G SNAP29 synaptosome associated protein 29 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:4,797,690...4,827,573
Ensembl chr19:4,797,725...4,830,251 		JBrowse link
G SNAP47 synaptosome associated protein 47 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:1,923,751...1,968,543
Ensembl chr25:1,923,555...1,968,497 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19217378) Ensembl
MGI		 PMID:19217378 GO_REF:0000107 NCBI chr20:10,147,577...10,150,721
Ensembl chr20:10,148,099...10,150,641 		JBrowse link
G STX11 syntaxin 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:29,045,674...29,084,602
Ensembl chr13:29,048,119...29,048,982 		JBrowse link
G STX19 syntaxin 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:86,673,139...86,688,288
Ensembl chr22:86,673,654...86,691,972 		JBrowse link
G STX1A syntaxin 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:9,347,495...9,367,948
Ensembl chr28:9,347,532...9,368,585 		JBrowse link
G STX1B syntaxin 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:27,683,526...27,702,032
Ensembl chr 5:27,684,082...27,694,814 		JBrowse link
G STX2 syntaxin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:126,174,446...126,225,342
Ensembl chr11:126,178,803...126,224,277 		JBrowse link
G STX3 syntaxin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:13,866,853...13,916,803
Ensembl chr 1:13,874,526...13,916,997 		JBrowse link
G STX4 syntaxin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:27,725,121...27,734,442
Ensembl chr 5:27,724,495...27,732,736 		JBrowse link
synaptic vesicle lumen acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP6AP1 ATPase H+ transporting accessory protein 1 involved_in IEA Ensembl GO_REF:0000107
G ATP6AP2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:37,742,550...37,769,022
Ensembl chr  X:37,742,545...37,769,062 		JBrowse link
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:63,754,523...63,818,537
Ensembl chr16:63,753,521...63,816,551 		JBrowse link
G ATP6V0A4 ATPase H+ transporting V0 subunit a4 involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr21:107,407,831...107,505,300 JBrowse link
G ATP6V0C ATPase H+ transporting V0 subunit c involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr 5:2,387,891...2,394,111
Ensembl chr 5:2,387,812...2,394,180 		JBrowse link
G ATP6V0D1 ATPase H+ transporting V0 subunit d1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:59,976,118...60,018,414
Ensembl chr 5:60,002,544...60,017,894 		JBrowse link
G ATP6V1A ATPase H+ transporting V1 subunit A involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr22:67,049,745...67,112,971
Ensembl chr22:67,048,796...67,081,962 		JBrowse link
G ATP6V1B1 ATPase H+ transporting V1 subunit B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:36,149,074...36,179,145
Ensembl chr14:36,149,006...36,177,671 		JBrowse link
G ATP6V1B2 ATPase H+ transporting V1 subunit B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:18,264,210...18,289,951
Ensembl chr 8:18,264,329...18,293,444 		JBrowse link
G ATP6V1C1 ATPase H+ transporting V1 subunit C1 involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr 8:97,878,970...97,930,552
Ensembl chr 8:97,879,019...97,926,263 		JBrowse link
G ATP6V1D ATPase H+ transporting V1 subunit D involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr24:44,578,057...44,598,918
Ensembl chr24:44,578,807...44,598,394 		JBrowse link
G ATP6V1F ATPase H+ transporting V1 subunit F involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr21:97,464,741...97,467,749
Ensembl chr21:97,464,146...97,468,370 		JBrowse link
G ATP6V1G1 ATPase H+ transporting V1 subunit G1 involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr12:24,994,480...25,004,618
Ensembl chr12:24,994,051...25,004,668 		JBrowse link
G ATP6V1G2 ATPase H+ transporting V1 subunit G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:40,440,321...40,442,701
Ensembl chr17:40,440,605...40,445,669 		JBrowse link
G ATP6V1H ATPase H+ transporting V1 subunit H involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:49,809,668...49,926,735
Ensembl chr 8:49,809,580...49,926,706 		JBrowse link
G CLCN3 chloride voltage-gated channel 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21378974) Ensembl
MGI		 PMID:21378974 GO_REF:0000107 NCBI chr 7:115,826,756...115,926,842
Ensembl chr 7:115,826,778...115,928,609 		JBrowse link
G LOC103227203 V-type proton ATPase subunit e 2 involved_in ISO (PMID:28793259) SynGO PMID:28793259 NCBI chr21:118,438,435...118,446,060
Ensembl chr21:118,439,143...118,444,214 		JBrowse link
G SLC17A7 solute carrier family 17 member 7 acts_upstream_of_or_within ISO (PMID:19169251) MGI PMID:19169251 NCBI chr 6:42,609,766...42,622,004
Ensembl chr 6:42,609,706...42,621,925 		JBrowse link
synaptic vesicle maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLG4 discs large MAGUK scaffold protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15603741) Ensembl
MGI		 PMID:15603741 GO_REF:0000107 NCBI chr16:6,562,953...6,592,247
Ensembl chr16:6,562,691...6,590,867 		JBrowse link
G LOC103219228 protein unc-13 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:45,230,661...45,461,934
Ensembl chr12:45,230,659...45,461,339 		JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:77,214,391...77,325,626
Ensembl chr 1:77,213,836...77,324,875 		JBrowse link
G RAB3A RAB3A, member RAS oncogene family involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11359932) Ensembl
MGI		 PMID:11359932 GO_REF:0000107 NCBI chr 6:16,671,388...16,678,780
Ensembl chr 6:16,670,431...16,678,644 		JBrowse link
G SNAPIN SNAP associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19217378) Ensembl
MGI		 PMID:19217378 GO_REF:0000107 NCBI chr20:10,147,577...10,150,721
Ensembl chr20:10,148,099...10,150,641 		JBrowse link
G STXBP1 syntaxin binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15145078) Ensembl
MGI		 PMID:15145078 GO_REF:0000107 NCBI chr12:10,440,061...10,519,798
Ensembl chr12:10,439,801...10,519,777 		JBrowse link
G UNC13A unc-13 homolog A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10440375) TreeGrafter
MGI		 PMID:10440375 GO_REF:0000118 NCBI chr 6:16,082,703...16,167,165
Ensembl chr 6:16,084,168...16,154,812 		JBrowse link
G UNC13C unc-13 homolog C involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr26:28,806,368...29,196,031 JBrowse link
G ZDHHC15 zinc finger DHHC-type palmitoyltransferase 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15603741) Ensembl
MGI		 PMID:15603741 GO_REF:0000107 NCBI chr  X:64,906,439...65,063,936 JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STX12 syntaxin 12 involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chr20:104,966,763...105,020,908
Ensembl chr20:104,966,581...105,020,901 		JBrowse link
G STX6 syntaxin 6 involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chr25:48,380,359...48,427,279
Ensembl chr25:48,397,712...48,426,676 		JBrowse link
G STX7 syntaxin 7 involved_in ISO (PMID:34408265) SynGO PMID:34408265 NCBI chr13:41,029,992...41,086,589
Ensembl chr13:41,030,073...41,088,308 		JBrowse link
G VAMP4 vesicle associated membrane protein 4 involved_in ISO PMID:17004320
PMID:26607000		 SynGO PMID:17004320 PMID:26607000 RGD:11058152 RGD:12050136 NCBI chr25:57,381,143...57,421,886
Ensembl chr25:57,384,757...57,421,893 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A involved_in ISO PMID:17004320 SynGO PMID:17004320 RGD:12050136 NCBI chr 9:105,330,089...105,828,029
Ensembl chr 9:105,330,143...105,695,049 		JBrowse link
T cell secretory granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRGN serglycin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:62,217,836...62,235,110
Ensembl chr 9:62,217,525...62,235,238 		JBrowse link
vesicle budding from membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA2 annexin A2 involved_in ISO (PMID:23861394) UniProt PMID:23861394 NCBI chr26:23,100,000...23,147,687
Ensembl chr26:23,099,992...23,145,457 		JBrowse link
G AP2M1 adaptor related protein complex 2 subunit mu 1 involved_in ISO (PMID:25898166) ARUK-UCL PMID:25898166 NCBI chr15:5,242,025...5,251,272 JBrowse link
G AP2M1 adaptor related protein complex 2 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:5,241,223...5,245,120 JBrowse link
G CHMP4A charged multivesicular body protein 4A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,192,581...1,196,989
Ensembl chr24:1,192,842...1,197,742 		JBrowse link
G CHMP4B charged multivesicular body protein 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:38,093,909...38,139,932
Ensembl chr 2:38,093,829...38,140,367 		JBrowse link
G CHMP4C charged multivesicular body protein 4C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:77,143,302...77,174,874
Ensembl chr 8:77,143,612...77,173,852 		JBrowse link
G CHMP5 charged multivesicular body protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:46,989,349...47,006,035
Ensembl chr12:46,988,340...47,006,742 		JBrowse link
G CHMP6 charged multivesicular body protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:72,943,048...72,951,121
Ensembl chr16:72,943,122...72,950,694 		JBrowse link
G CHMP7 charged multivesicular body protein 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:21,370,334...21,390,036
Ensembl chr 8:21,373,968...21,387,698 		JBrowse link
G FNBP1L formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,686,836...39,788,948
Ensembl chr20:39,686,742...39,788,893 		JBrowse link
G P2RX7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:15905573) MGI PMID:15905573 NCBI chr11:116,505,975...116,560,151
Ensembl chr11:116,529,346...116,563,059 		JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:77,214,391...77,325,626
Ensembl chr 1:77,213,836...77,324,875 		JBrowse link
G S100A10 S100 calcium binding protein A10 involved_in ISO (PMID:23861394) UniProt PMID:23861394 NCBI chr20:11,690,580...11,701,561 JBrowse link
G VPS4A vacuolar protein sorting 4 homolog A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:58,081,800...58,095,115
Ensembl chr 5:58,082,521...58,095,173 		JBrowse link
G WASL WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr21:92,480,392...92,546,725
Ensembl chr21:92,482,918...92,546,481 		JBrowse link
vesicle fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2CD5 C2 calcium dependent domain containing 5 acts_upstream_of_or_within ISO (PMID:21907143) MGI PMID:21907143 NCBI chr11:22,267,508...22,362,927
Ensembl chr11:22,267,415...22,362,969 		JBrowse link
G CAV2 caveolin 2 involved_in ISO (PMID:12743374) BHF-UCL PMID:12743374 NCBI chr21:85,197,452...85,206,521
Ensembl chr21:85,197,537...85,206,588 		JBrowse link
G CHP1 calcineurin like EF-hand protein 1 ISO RGD PMID:8626580 RGD:724726 NCBI chr26:41,734,698...41,785,273
Ensembl chr26:41,733,063...41,785,586 		JBrowse link
G CORO1A coronin 1A involved_in
acts_upstream_of		 IEA
ISO		 (PMID:24270184) Ensembl
MGI		 PMID:24270184 GO_REF:0000107 NCBI chr 5:26,482,269...26,488,537
Ensembl chr 5:26,480,753...26,487,929 		JBrowse link
G DYSF dysferlin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:35,488,393...35,715,222
Ensembl chr14:35,488,391...35,651,395 		JBrowse link
G EEA1 early endosome antigen 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:88,164,064...88,318,305
Ensembl chr11:88,167,550...88,318,218 		JBrowse link
G FER1L5 fer-1 like family member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:974,499...1,038,043
Ensembl chr14:993,160...1,037,840 		JBrowse link
G GNAI3 G protein subunit alpha i3 ISO RGD PMID:12038977 RGD:728690 NCBI chr20:23,950,819...24,000,069
Ensembl chr20:23,954,384...23,999,072 		JBrowse link
G GOSR1 golgi SNAP receptor complex member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:24,206,226...24,256,628
Ensembl chr16:24,206,296...24,254,812 		JBrowse link
G GOSR2 golgi SNAP receptor complex member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:60,630,505...60,664,596
Ensembl chr16:60,630,509...60,646,133 		JBrowse link
G LOC103221223 vesicle-associated membrane protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:12,164,561...12,165,161 JBrowse link
G STX10 syntaxin 10 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:11,827,440...11,833,825 JBrowse link
G STX12 syntaxin 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:104,966,763...105,020,908
Ensembl chr20:104,966,581...105,020,901 		JBrowse link
G STX16 syntaxin 16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:5,462,910...5,489,416
Ensembl chr 2:5,460,383...5,488,693 		JBrowse link
G STX17 syntaxin 17 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:39,457,816...39,525,138
Ensembl chr12:39,462,367...39,516,531 		JBrowse link
G STX5 syntaxin 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:11,071,099...11,094,880
Ensembl chr 1:11,071,118...11,096,189 		JBrowse link
G STX6 syntaxin 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:48,380,359...48,427,279
Ensembl chr25:48,397,712...48,426,676 		JBrowse link
G STX7 syntaxin 7 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:15133481 GO_REF:0000118 RGD:4892614 NCBI chr13:41,029,992...41,086,589
Ensembl chr13:41,030,073...41,088,308 		JBrowse link
G STX8 syntaxin 8 ISO RGD PMID:15133481 RGD:4892614 NCBI chr16:8,613,551...8,937,428 JBrowse link
G STX8 syntaxin 8 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:8,613,280...8,929,955 JBrowse link
G SYT11 synaptotagmin 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:7,993,426...8,019,256
Ensembl chr20:7,992,988...8,019,238 		JBrowse link
G SYT13 synaptotagmin 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:20,054,549...20,101,574
Ensembl chr 1:20,054,827...20,104,144 		JBrowse link
G SYT4 synaptotagmin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007 		JBrowse link
G VAMP2 vesicle associated membrane protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:7,539,098...7,542,466 JBrowse link
G VAMP3 vesicle associated membrane protein 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:123,973,672...123,984,230
Ensembl chr20:123,971,992...123,984,187 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:15133481 GO_REF:0000118 RGD:4892614 NCBI chr  X:129,937,026...129,984,071
Ensembl chr  X:129,937,046...129,984,119 		JBrowse link
G VAMP8 vesicle associated membrane protein 8 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:18535671) RGD
TreeGrafter
MGI		 PMID:15133481 PMID:18535671 GO_REF:0000118 RGD:4892614 NCBI chr14:21,575,057...21,580,054
Ensembl chr14:21,575,161...21,579,820 		JBrowse link
G VAV3 vav guanine nucleotide exchange factor 3 acts_upstream_of_or_within ISO (PMID:15249579) MGI PMID:15249579 NCBI chr20:25,631,104...26,023,854
Ensembl chr20:25,631,171...26,023,849 		JBrowse link
vesicle fusion to plasma membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TRARG1 trafficking regulator of GLUT4 (SLC2A4) 1 acts_upstream_of_or_within ISO (PMID:26629404) MGI PMID:26629404 NCBI chr16:981,216...998,973 JBrowse link
G TRARG1 trafficking regulator of GLUT4 (SLC2A4) 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:982,106...1,036,870 JBrowse link
vesicle fusion with Golgi apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BET1 Bet1 golgi vesicular membrane trafficking protein involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:16735505 GO_REF:0000118 RGD:4892613 NCBI chr21:55,014,065...55,024,958
Ensembl chr21:55,014,079...55,024,964 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:13,602,852...13,624,483
Ensembl chr20:13,602,870...13,622,650 		JBrowse link
G STX5 syntaxin 5 ISO RGD PMID:16735505 RGD:4892613 NCBI chr 1:11,071,099...11,094,880
Ensembl chr 1:11,071,118...11,096,189 		JBrowse link
G USO1 USO1 vesicle transport factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 7:24,236,601...24,325,575
Ensembl chr 7:24,236,698...24,325,630 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 ISO RGD PMID:16735505 RGD:4892613 NCBI chr  X:129,937,026...129,984,071
Ensembl chr  X:129,937,046...129,984,119 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:16735505 GO_REF:0000118 RGD:4892613 NCBI chr 9:105,330,089...105,828,029
Ensembl chr 9:105,330,143...105,695,049 		JBrowse link
G VTI1B vesicle transport through interaction with t-SNAREs 1B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:44,884,082...44,907,819
Ensembl chr24:44,884,315...44,907,771 		JBrowse link
G YIPF4 Yip1 domain family member 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:75,185,577...75,215,298
Ensembl chr14:75,186,925...75,215,276 		JBrowse link
G YIPF5 Yip1 domain family member 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:46,765,326...46,777,245
Ensembl chr23:46,766,484...46,777,244 		JBrowse link
G YIPF7 Yip1 domain family member 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:5,611,109...5,665,483
Ensembl chr27:5,636,522...5,665,563 		JBrowse link
vesicle fusion with vesicle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYT4 synaptotagmin 4 involved_in ISO PMID:16618809 ParkinsonsUK-UCL PMID:16618809 RGD:11535113 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    cellular process 15870
      cellular component organization or biogenesis 6767
        cellular component organization 6531
          organelle organization 3670
            vesicle organization 361
              Cvt vesicle assembly 0
              ciliary vesicle assembly 0
              contractile vacuole organization 0
              endosome organization + 66
              extracellular exosome assembly + 7
              gut granule assembly + 0
              phagolysosome assembly + 21
              pigment granule organization + 22
              secretory granule organization + 61
              synaptic vesicle maturation + 28
              vesicle budding from membrane + 67
              vesicle coating + 18
              vesicle fusion + 131
paths to the root