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Gene: SNX10 (sorting nexin 10) Chlorocebus sabaeus

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Symbol:

SNX10

Name:

sorting nexin 10

RGD ID:

18536144

Description:

ENCODES a protein that exhibits 1-phosphatidylinositol binding (inferred); ATPase binding (inferred); lipid binding (inferred); INVOLVED IN bone mineralization involved in bone maturation (ortholog); bone remodeling (ortholog); bone resorption (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 8 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN apical cytoplasm (inferred); centrosome (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX10 (sorting nexin 10)	NCBI	Ortholog
Mus musculus (house mouse):	Snx10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx10 (sorting nexin 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	31,999,253 - 32,044,967 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	31,998,277 - 32,081,843 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	72,631,259 - 72,716,109 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive osteopetrosis 8 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Liver Neoplasms (ISO)

osteopetrosis (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bone mineralization involved in bone maturation (IEA,ISO)

bone remodeling (IEA,ISO)

bone resorption (IEA,ISO)

calcium ion homeostasis (IEA,ISO)

cellular homeostasis (IEA,ISO)

cellular response to leukemia inhibitory factor (IEA,ISO)

cilium assembly (IEA)

endocytosis (IEA,ISO)

endosome organization (IEA)

establishment of localization in cell (IEA,ISO)

gastric acid secretion (IEA,ISO)

intracellular protein transport (IEA)

osteoclast differentiation (IEA)

protein localization to centrosome (IEA)

protein localization to cilium (IEA)

protein transport (IEA)

ruffle assembly (IEA,ISO)

tooth eruption (IEA,ISO)

vesicle organization (IEA)

Cellular Component

apical cytoplasm (IEA)

centrosome (IEA)

cytoplasm (IEA)

endomembrane system (IEA)

endoplasmic reticulum (IEA)

endosome (IEA)

extrinsic component of endosome membrane (IEA)

membrane (IEA)

nucleus (IEA)

secretory granule (IEA)

Molecular Function

1-phosphatidylinositol binding (IEA)

ATPase binding (IEA)

lipid binding (IEA)

phosphatidylinositol binding (IEA)

phosphatidylinositol phosphate binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SNX10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	31,999,253 - 32,044,967 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	31,998,277 - 32,081,843 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	72,631,259 - 72,716,109 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SNX10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	26,291,862 - 26,374,383 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	26,291,862 - 26,374,383 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	26,331,482 - 26,414,003 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	26,298,040 - 26,380,474 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	26,104,754 - 26,187,187	NCBI
Celera	7	26,320,523 - 26,402,976 (+)	NCBI		Celera
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	26,213,196 - 26,295,663 (+)	NCBI		HuRef
CHM1_1	7	26,331,091 - 26,413,549 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	26,427,536 - 26,510,069 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	26,382,693 - 26,465,116 (+)	NCBI

Snx10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	51,500,882 - 51,567,659 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	51,500,881 - 51,567,659 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	51,523,900 - 51,590,679 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	51,523,901 - 51,590,679 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	51,473,902 - 51,540,669 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	51,474,106 - 51,520,253 (+)	NCBI		MGSCv36	mm8
Celera	6	52,041,831 - 52,108,565 (+)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	24.95	NCBI

Snx10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	81,943,262 - 82,007,667 (+)	NCBI		GRCr8
mRatBN7.2	4	80,612,648 - 80,677,005 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	80,612,669 - 80,676,996 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	85,837,043 - 85,902,896 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	81,612,448 - 81,678,303 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	80,044,763 - 80,107,193 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	81,311,490 - 81,375,248 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	81,311,490 - 81,374,158 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	145,977,387 - 146,041,212 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	79,789,556 - 79,853,215 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	80,065,685 - 80,129,343 (+)	NCBI
Celera	4	75,513,406 - 75,574,707 (+)	NCBI		Celera
Cytogenetic Map	4	q24	NCBI

Snx10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955410	28,137,426 - 28,178,814 (+)	NCBI	ChiLan1.0	ChiLan1.0

SNX10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	31,119,435 - 31,201,532 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	79,444,161 - 79,526,258 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	26,935,357 - 27,017,461 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	26,537,519 - 26,618,862 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	26,537,189 - 26,620,720 (+)	Ensembl	panpan1.1		panPan2

SNX10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	39,567,701 - 39,642,475 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	39,567,471 - 39,640,872 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	39,058,554 - 39,132,699 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	39,506,523 - 39,581,109 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	39,506,054 - 39,581,109 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	39,621,497 - 39,695,665 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	39,308,572 - 39,382,686 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	39,659,123 - 39,733,270 (+)	NCBI		UU_Cfam_GSD_1.0

Snx10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	83,837,104 - 83,901,879 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	3,048,691 - 3,114,876 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	3,048,801 - 3,113,610 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	46,064,580 - 46,142,945 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	46,064,575 - 46,142,983 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	50,838,880 - 50,917,745 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Snx10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	4,209,036 - 4,233,519 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624739	4,210,840 - 4,274,768 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SNX10
1158 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007981823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007981824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007981825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038004761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000012286 ⟹ ENSCSAP00000010328

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	21	31,998,277 - 32,081,843 (-)	Ensembl

RefSeq Acc Id:

XM_007981823 ⟹ XP_007980014

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	31,999,253 - 32,025,641 (-)	NCBI
Vero_WHO_p1.0	NW_023666042	72,631,260 - 72,716,109 (+)	NCBI

Sequence:

show sequence

ATCCACTCCAGTTTGGAGGTTGCAAATCACCCATTGTGGATATCTTATTTTTCAGATTGATTGT
GTCCTGTGCTGAAGATGTTTCCGGAACAACAGAAAGAGGAATTTGTAAGTGTCTGGGTTCGAGA
TCCTAGGATTCAGAAGGAGGACTTCTGGCATTCTTACATTGACTATGAGATATGTATTCATACT
AATAGCATGTGTTTTACAATGAAAACATCCTGTGTACGAAGAAGATACAGAGAATTCGTGTGGC
TGAGGCAGAGACTCCAAAGTAATGCGTTGCTGGTACAACTTCCAGAACTTCCATCTAAAAACCT
ATTTTTCAACATGAACAATCGCCAGCATGTGGATCAGCGTCGCCAGGGTCTGGAAGATTTCCTC
AGAAAAGTCCTACAGAATGCACTTTTGCTTTCAGATAGCAGCCTTCACCTCTTCTTACAGAGCC
ATCTGAATTCAGAAGACATTGAGGCGTGTGTTTCTGGGCAGACTAAGTATTCTGTGGAAGAAGC
AATTCACAAGTTTGCCTTGATGAACAGACGTTTCCCTGAAGAAGATGAAGAAGGAAAAAAAGAA
AATGATATAGATTATGATTCAGAAAGTTCATCCTCTGGGCTTGGACACAGTAGTGATGACAGCA
GTTCACATGGATGTAAAGTAAATACAGCTCCGCAGGAATCCTGAAAAATAATTCTAATGTTACT
ATCTTAGGAATAGCAAATTATGTCCAGTCATAGAGAAGAAAGCTTCGTGATAATACATTCTTAC
CTAAAGTTCACTGTCATGATGTTAGGTATTTAAATTCTTAAAGCTGTTGGGTTGTTTATTAGTG
GTATTTTTATGTTGTCTTATTTTAGGTAGGCTTCTGTGTAAAGCTAAAAATCCTGTGAATGCAA
TACTATCCTTTACAGGCAGGCATTATTGGTAAACAAGATCTTGCCCTCAAATGAAATGACTTAC
ATGCTTTAAAAAACCTAGGTGGTTTTATTGAATTTAAAAAGATAGGCAACTAAGTAGCATTTAA
AATCAAGATAGAGCATTCCTTCTTGTATCAGTGGGGCAGTGTTACCGTAAACAGTAAACACGGT
GTATATGTTGTTAACCCCGATGAAGAGTAACAGTGTAGACCAGACTGCCTCTCTCAGACATGTG
GCTGATATTTTGTGGATACCTCCTGTGCACTGGCAAAACACTATACGCTTTTGGGTGTTTGACT
GAAATATTTTAAGAGTATCTAACCTTTCCAGTATTCTGTTTCACGCTTAGATGGAAATGTATCT
TATGAATAGAGTCATATTAAAATAATGTTTACATCTTAGAAAAAACATAGATAGTGCTAGTACT
ATTACTTATAATTCCAGTATATAGATTCAGAAATACATTTTCATTGTCCAAAATCAGCTTCAAC
AAATGGTTTTTGGAGACAAATCATTTTTTTCATTATCATTGCATAATTAGACCTACAGGTTAAT
GATTTATTTTTTGACTAAATGTGCAATTTCTTATCACTAGATAACTTTCAGTATCAGTGGTGGT
TACTTACTACTTAAATCAGAGGAAGGATTTTATAAAAATAAATTTAATTTTACCAATAAATATT
CCCATAATTTAGAAAAGGATGTCAACTTGCTAATTTCAGAAATAATTATTCATTTTTTAAAAAC
ACCTTCTTTTAAAGCATCTACTTGAAGATTGGTATAATTTTCATAAAATGTCTTTTTTTTTAGT
GTCCCAAAGATATCTTAGGTAAACTATTTTGAACTTCAGATTTCAGATGAGGCAACATTTTCTT
GAGATAATTACCCAAGTTTCTTCCATGTGGAATGGTACAAAATATTTCTGTGAAACTAACAGGA
AGATATTTTCAGATAACTAGGATAACTTGTTGCTTTGTCACCCAGCCTAATTGAAGAGTGGCAG
AAGCTACTACAAAAAGCAACCTTTTCATTTTCACTAGGAGTTTAAAAGCTATTGTATTATTAAA
AAGTCTTTACAATGCTTGTTTCAAAGAACCAACAGAAAAAAAAGCTAACAAAACTAAGAACTAA
CATTTAAAAAATTAAATTTAGAATGATTTCTTTAATTTGTCCTTTTTTTCTTTGGTCTAAAACA
TTATTAAATTTTTGTAAATATTTTGA

hide sequence

RefSeq Acc Id:

XM_007981824 ⟹ XP_007980015

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	31,999,253 - 32,044,967 (-)	NCBI
Vero_WHO_p1.0	NW_023666042	72,667,852 - 72,716,109 (+)	NCBI

Sequence:

show sequence

TCCAGAGTAGCTGGGATTACAGATTGATTGTGTCCTGTGCTGAAGATGTTTCCGGAACAACAGA
AAGAGGAATTTGTAAGTGTCTGGGTTCGAGATCCTAGGATTCAGAAGGAGGACTTCTGGCATTC
TTACATTGACTATGAGATATGTATTCATACTAATAGCATGTGTTTTACAATGAAAACATCCTGT
GTACGAAGAAGATACAGAGAATTCGTGTGGCTGAGGCAGAGACTCCAAAGTAATGCGTTGCTGG
TACAACTTCCAGAACTTCCATCTAAAAACCTATTTTTCAACATGAACAATCGCCAGCATGTGGA
TCAGCGTCGCCAGGGTCTGGAAGATTTCCTCAGAAAAGTCCTACAGAATGCACTTTTGCTTTCA
GATAGCAGCCTTCACCTCTTCTTACAGAGCCATCTGAATTCAGAAGACATTGAGGCGTGTGTTT
CTGGGCAGACTAAGTATTCTGTGGAAGAAGCAATTCACAAGTTTGCCTTGATGAACAGACGTTT
CCCTGAAGAAGATGAAGAAGGAAAAAAAGAAAATGATATAGATTATGATTCAGAAAGTTCATCC
TCTGGGCTTGGACACAGTAGTGATGACAGCAGTTCACATGGATGTAAAGTAAATACAGCTCCGC
AGGAATCCTGAAAAATAATTCTAATGTTACTATCTTAGGAATAGCAAATTATGTCCAGTCATAG
AGAAGAAAGCTTCGTGATAATACATTCTTACCTAAAGTTCACTGTCATGATGTTAGGTATTTAA
ATTCTTAAAGCTGTTGGGTTGTTTATTAGTGGTATTTTTATGTTGTCTTATTTTAGGTAGGCTT
CTGTGTAAAGCTAAAAATCCTGTGAATGCAATACTATCCTTTACAGGCAGGCATTATTGGTAAA
CAAGATCTTGCCCTCAAATGAAATGACTTACATGCTTTAAAAAACCTAGGTGGTTTTATTGAAT
TTAAAAAGATAGGCAACTAAGTAGCATTTAAAATCAAGATAGAGCATTCCTTCTTGTATCAGTG
GGGCAGTGTTACCGTAAACAGTAAACACGGTGTATATGTTGTTAACCCCGATGAAGAGTAACAG
TGTAGACCAGACTGCCTCTCTCAGACATGTGGCTGATATTTTGTGGATACCTCCTGTGCACTGG
CAAAACACTATACGCTTTTGGGTGTTTGACTGAAATATTTTAAGAGTATCTAACCTTTCCAGTA
TTCTGTTTCACGCTTAGATGGAAATGTATCTTATGAATAGAGTCATATTAAAATAATGTTTACA
TCTTAGAAAAAACATAGATAGTGCTAGTACTATTACTTATAATTCCAGTATATAGATTCAGAAA
TACATTTTCATTGTCCAAAATCAGCTTCAACAAATGGTTTTTGGAGACAAATCATTTTTTTCAT
TATCATTGCATAATTAGACCTACAGGTTAATGATTTATTTTTTGACTAAATGTGCAATTTCTTA
TCACTAGATAACTTTCAGTATCAGTGGTGGTTACTTACTACTTAAATCAGAGGAAGGATTTTAT
AAAAATAAATTTAATTTTACCAATAAATATTCCCATAATTTAGAAAAGGATGTCAACTTGCTAA
TTTCAGAAATAATTATTCATTTTTTAAAAACACCTTCTTTTAAAGCATCTACTTGAAGATTGGT
ATAATTTTCATAAAATGTCTTTTTTTTTAGTGTCCCAAAGATATCTTAGGTAAACTATTTTGAA
CTTCAGATTTCAGATGAGGCAACATTTTCTTGAGATAATTACCCAAGTTTCTTCCATGTGGAAT
GGTACAAAATATTTCTGTGAAACTAACAGGAAGATATTTTCAGATAACTAGGATAACTTGTTGC
TTTGTCACCCAGCCTAATTGAAGAGTGGCAGAAGCTACTACAAAAAGCAACCTTTTCATTTTCA
CTAGGAGTTTAAAAGCTATTGTATTATTAAAAAGTCTTTACAATGCTTGTTTCAAAGAACCAAC
AGAAAAAAAAGCTAACAAAACTAAGAACTAACATTTAAAAAATTAAATTTAGAATGATTTCTTT
AATTTGTCCTTTTTTTCTTTGGTCTAAAACATTATTAAATTTTTGTAAATATTTTGA

hide sequence

RefSeq Acc Id:

XM_007981825 ⟹ XP_007980016

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	21	31,999,253 - 32,015,520 (-)	NCBI
Vero_WHO_p1.0	NW_023666042	72,699,624 - 72,716,109 (+)	NCBI

Sequence:

show sequence

AAATAACTTACCATTAATTCATGGAGCCCAAGAATCCAAGTAGATGAGGTTTTAATTTCAAGTG
AAGTTTGATTTTCCTTTCCTGAAGGCAGTTTGTTTATTCCTGCAGGCATTTATTTATTAATTAA
ATGATACTAATGGAATGCATTGGATGTATCAGGCATTCAAGTCTTACAAGACAGCCTAAGCTGC
CCTACAGGAGCTTAGCATCTGCTAGAGGAGGCCTACAGGAATTTGTAAGTGTCTGGGTTCGAGA
TCCTAGGATTCAGAAGGAGGACTTCTGGCATTCTTACATTGACTATGAGATATGTATTCATACT
AATAGCATGTGTTTTACAATGAAAACATCCTGTGTACGAAGAAGATACAGAGAATTCGTGTGGC
TGAGGCAGAGACTCCAAAGTAATGCGTTGCTGGTACAACTTCCAGAACTTCCATCTAAAAACCT
ATTTTTCAACATGAACAATCGCCAGCATGTGGATCAGCGTCGCCAGGGTCTGGAAGATTTCCTC
AGAAAAGTCCTACAGAATGCACTTTTGCTTTCAGATAGCAGCCTTCACCTCTTCTTACAGAGCC
ATCTGAATTCAGAAGACATTGAGGCGTGTGTTTCTGGGCAGACTAAGTATTCTGTGGAAGAAGC
AATTCACAAGTTTGCCTTGATGAACAGACGTTTCCCTGAAGAAGATGAAGAAGGAAAAAAAGAA
AATGATATAGATTATGATTCAGAAAGTTCATCCTCTGGGCTTGGACACAGTAGTGATGACAGCA
GTTCACATGGATGTAAAGTAAATACAGCTCCGCAGGAATCCTGAAAAATAATTCTAATGTTACT
ATCTTAGGAATAGCAAATTATGTCCAGTCATAGAGAAGAAAGCTTCGTGATAATACATTCTTAC
CTAAAGTTCACTGTCATGATGTTAGGTATTTAAATTCTTAAAGCTGTTGGGTTGTTTATTAGTG
GTATTTTTATGTTGTCTTATTTTAGGTAGGCTTCTGTGTAAAGCTAAAAATCCTGTGAATGCAA
TACTATCCTTTACAGGCAGGCATTATTGGTAAACAAGATCTTGCCCTCAAATGAAATGACTTAC
ATGCTTTAAAAAACCTAGGTGGTTTTATTGAATTTAAAAAGATAGGCAACTAAGTAGCATTTAA
AATCAAGATAGAGCATTCCTTCTTGTATCAGTGGGGCAGTGTTACCGTAAACAGTAAACACGGT
GTATATGTTGTTAACCCCGATGAAGAGTAACAGTGTAGACCAGACTGCCTCTCTCAGACATGTG
GCTGATATTTTGTGGATACCTCCTGTGCACTGGCAAAACACTATACGCTTTTGGGTGTTTGACT
GAAATATTTTAAGAGTATCTAACCTTTCCAGTATTCTGTTTCACGCTTAGATGGAAATGTATCT
TATGAATAGAGTCATATTAAAATAATGTTTACATCTTAGAAAAAACATAGATAGTGCTAGTACT
ATTACTTATAATTCCAGTATATAGATTCAGAAATACATTTTCATTGTCCAAAATCAGCTTCAAC
AAATGGTTTTTGGAGACAAATCATTTTTTTCATTATCATTGCATAATTAGACCTACAGGTTAAT
GATTTATTTTTTGACTAAATGTGCAATTTCTTATCACTAGATAACTTTCAGTATCAGTGGTGGT
TACTTACTACTTAAATCAGAGGAAGGATTTTATAAAAATAAATTTAATTTTACCAATAAATATT
CCCATAATTTAGAAAAGGATGTCAACTTGCTAATTTCAGAAATAATTATTCATTTTTTAAAAAC
ACCTTCTTTTAAAGCATCTACTTGAAGATTGGTATAATTTTCATAAAATGTCTTTTTTTTTAGT
GTCCCAAAGATATCTTAGGTAAACTATTTTGAACTTCAGATTTCAGATGAGGCAACATTTTCTT
GAGATAATTACCCAAGTTTCTTCCATGTGGAATGGTACAAAATATTTCTGTGAAACTAACAGGA
AGATATTTTCAGATAACTAGGATAACTTGTTGCTTTGTCACCCAGCCTAATTGAAGAGTGGCAG
AAGCTACTACAAAAAGCAACCTTTTCATTTTCACTAGGAGTTTAAAAGCTATTGTATTATTAAA
AAGTCTTTACAATGCTTGTTTCAAAGAACCAACAGAAAAAAAAGCTAACAAAACTAAGAACTAA
CATTTAAAAAATTAAATTTAGAATGATTTCTTTAATTTGTCCTTTTTTTCTTTGGTCTAAAACA
TTATTAAATTTTTGTAAATATTTTGA

hide sequence

RefSeq Acc Id:

XM_038004760 ⟹ XP_037860688

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666042	72,631,259 - 72,716,109 (+)	NCBI

RefSeq Acc Id:

XM_038004761 ⟹ XP_037860689

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666042	72,684,392 - 72,716,109 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007980014	(Get FASTA)	NCBI Sequence Viewer
	XP_007980015	(Get FASTA)	NCBI Sequence Viewer
	XP_007980016	(Get FASTA)	NCBI Sequence Viewer
	XP_037860688	(Get FASTA)	NCBI Sequence Viewer
	XP_037860689	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010328
	ENSCSAP00000010328.1

RefSeq Acc Id:	XP_007980015 ⟸ XM_007981824
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RNY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007980014 ⟸ XM_007981823
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RNY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007980016 ⟸ XM_007981825
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSCSAP00000010328 ⟸ ENSCSAT00000012286

RefSeq Acc Id:	XP_037860688 ⟸ XM_038004760
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RNY9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860689 ⟸ XM_038004761
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RNY9 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014190	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012286.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
InterPro	Phox	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SNX10/11	UniProtKB/TrEMBL
KEGG Report	csab:103226339	UniProtKB/TrEMBL
NCBI Gene	SNX10	ENTREZGENE
PANTHER	PTHR46209	UniProtKB/TrEMBL
	SORTING NEXIN-10	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
SMART	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF64268	UniProtKB/TrEMBL
UniProt	A0A0D9RNY9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM