Snx10 (sorting nexin 10) - Rat Genome Database

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Gene: Snx10 (sorting nexin 10) Heterocephalus glaber
Analyze
Symbol: Snx10
Name: sorting nexin 10
RGD ID: 18915059
Description: ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); ATPase binding (ortholog); INVOLVED IN bone mineralization involved in bone maturation (ortholog); bone remodeling (ortholog); bone resorption (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 8 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN apical cytoplasm (ortholog); centrosome (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247394,209,036 - 4,233,519 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247394,210,840 - 4,274,768 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snx10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247394,209,036 - 4,233,519 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247394,210,840 - 4,274,768 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNX10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38726,291,862 - 26,374,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl726,291,862 - 26,374,383 (+)EnsemblGRCh38hg38GRCh38
GRCh37726,331,482 - 26,414,003 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36726,298,040 - 26,380,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 34726,104,754 - 26,187,187NCBI
Celera726,320,523 - 26,402,976 (+)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef726,213,196 - 26,295,663 (+)NCBIHuRef
CHM1_1726,331,091 - 26,413,549 (+)NCBICHM1_1
T2T-CHM13v2.0726,427,536 - 26,510,069 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2726,382,693 - 26,465,116 (+)NCBI
Snx10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39651,500,882 - 51,567,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl651,500,881 - 51,567,659 (+)EnsemblGRCm39 Ensembl
GRCm38651,523,900 - 51,590,679 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl651,523,901 - 51,590,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv37651,473,902 - 51,540,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36651,474,106 - 51,520,253 (+)NCBIMGSCv36mm8
Celera652,041,831 - 52,108,565 (+)NCBICelera
Cytogenetic Map6B3NCBI
cM Map624.95NCBI
Snx10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8481,943,262 - 82,007,667 (+)NCBIGRCr8
mRatBN7.2480,612,648 - 80,677,005 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl480,612,669 - 80,676,996 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx485,837,043 - 85,902,896 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0481,612,448 - 81,678,303 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,044,763 - 80,107,193 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0481,311,490 - 81,375,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl481,311,490 - 81,374,158 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,977,387 - 146,041,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4479,789,556 - 79,853,215 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1480,065,685 - 80,129,343 (+)NCBI
Celera475,513,406 - 75,574,707 (+)NCBICelera
Cytogenetic Map4q24NCBI
Snx10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541028,137,426 - 28,178,814 (+)NCBIChiLan1.0ChiLan1.0
SNX10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,119,435 - 31,201,532 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1779,444,161 - 79,526,258 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0726,935,357 - 27,017,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1726,537,519 - 26,618,862 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl726,537,189 - 26,620,720 (+)Ensemblpanpan1.1panPan2
SNX10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11439,567,701 - 39,642,475 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1439,567,471 - 39,640,872 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,058,554 - 39,132,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01439,506,523 - 39,581,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1439,506,054 - 39,581,109 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11439,621,497 - 39,695,665 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01439,308,572 - 39,382,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01439,659,123 - 39,733,270 (+)NCBIUU_Cfam_GSD_1.0
Snx10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511883,837,104 - 83,901,879 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364783,048,691 - 3,114,876 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364783,048,801 - 3,113,610 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1846,064,580 - 46,142,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11846,064,575 - 46,142,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,838,880 - 50,917,745 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,999,253 - 32,044,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2131,998,277 - 32,081,843 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604272,631,259 - 72,716,109 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000023752   ⟹   ENSHGLP00000023535
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247394,209,036 - 4,223,723 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000023753   ⟹   ENSHGLP00000023536
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247394,212,524 - 4,233,519 (-)Ensembl
RefSeq Acc Id: XM_004839525   ⟹   XP_004839582
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247394,210,840 - 4,274,767 (-)NCBI
RefSeq Acc Id: XM_013070284   ⟹   XP_012925738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247394,210,840 - 4,257,349 (-)NCBI
RefSeq Acc Id: XM_021254101   ⟹   XP_021109760
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247394,210,840 - 4,274,768 (-)NCBI
RefSeq Acc Id: XM_021254102   ⟹   XP_021109761
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247394,210,840 - 4,274,768 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004839582 (Get FASTA)   NCBI Sequence Viewer  
  XP_012925738 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109760 (Get FASTA)   NCBI Sequence Viewer  
  XP_021109761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000023536
  ENSHGLP00100029615
GenBank Protein JAO02061 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021109761   ⟸   XM_021254102
- UniProtKB: A0A0P6JDK5 (UniProtKB/TrEMBL),   G5BD46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021109760   ⟸   XM_021254101
- UniProtKB: A0A0P6JDK5 (UniProtKB/TrEMBL),   G5BD46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004839582   ⟸   XM_004839525
- UniProtKB: A0A0P6JDK5 (UniProtKB/TrEMBL),   G5BD46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012925738   ⟸   XM_013070284
- UniProtKB: A0A0P6JDK5 (UniProtKB/TrEMBL),   G5BD46 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000023535   ⟸   ENSHGLT00000023752
RefSeq Acc Id: ENSHGLP00000023536   ⟸   ENSHGLT00000023753


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016783 Ensembl, ENTREZGENE
  ENSHGLG00100042532 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000023753 ENTREZGENE
  ENSHGLT00100051786 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
InterPro PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX10/11 UniProtKB/TrEMBL
KEGG Report hgl:101713644 UniProtKB/TrEMBL
NCBI Gene Snx10 ENTREZGENE
PANTHER PTHR46209 UniProtKB/TrEMBL
  SORTING NEXIN-10 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF64268 UniProtKB/TrEMBL
UniProt A0A0P6JDK5 ENTREZGENE, UniProtKB/TrEMBL
  G5BD46 ENTREZGENE, UniProtKB/TrEMBL