TBC1D20 (TBC1 domain family member 20) - Rat Genome Database

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Gene: TBC1D20 (TBC1 domain family member 20) Chlorocebus sabaeus
Analyze
Symbol: TBC1D20
Name: TBC1 domain family member 20
RGD ID: 18581277
Description: ENCODES a protein that exhibits GTPase activator activity (inferred); small GTPase binding (inferred); INVOLVED IN acrosome assembly (ortholog); camera-type eye development (ortholog); Golgi organization (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 1 (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,065,975 - 56,093,521 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,066,042 - 56,094,333 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,861,563 - 7,886,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TBC1D20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,065,975 - 56,093,521 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,066,042 - 56,094,333 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,861,563 - 7,886,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TBC1D20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3820435,480 - 462,533 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl20423,596 - 462,566 (-)EnsemblGRCh38hg38GRCh38
GRCh3720416,124 - 443,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3620364,124 - 391,187 (-)NCBINCBI36Build 36hg18NCBI36
Build 3420364,125 - 391,147NCBI
Celera20510,958 - 538,015 (-)NCBICelera
Cytogenetic Map20p13NCBI
HuRef20367,459 - 394,130 (-)NCBIHuRef
CHM1_120416,126 - 443,204 (-)NCBICHM1_1
T2T-CHM13v2.020479,231 - 506,260 (-)NCBIT2T-CHM13v2.0
Tbc1d20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,135,745 - 152,155,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,135,748 - 152,155,916 (+)EnsemblGRCm39 Ensembl
GRCm382152,293,826 - 152,313,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,293,828 - 152,313,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,119,608 - 152,138,326 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362151,985,313 - 152,004,031 (+)NCBIMGSCv36mm8
Celera2158,107,984 - 158,126,733 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map274.83NCBI
Tbc1d20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,228,699 - 161,247,319 (+)NCBIGRCr8
mRatBN7.23140,768,537 - 140,787,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3140,768,537 - 140,785,121 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3144,673,328 - 144,690,001 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,257,161 - 153,273,834 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03150,997,769 - 151,014,273 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03147,772,006 - 147,790,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,772,165 - 147,789,158 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,120,296 - 154,137,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,623,713 - 142,640,197 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13142,529,285 - 142,545,770 (+)NCBI
Celera3139,520,860 - 139,537,468 (+)NCBICelera
Cytogenetic Map3q41NCBI
Tbc1d20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597291,541 - 314,292 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955597291,541 - 313,799 (-)NCBIChiLan1.0ChiLan1.0
TBC1D20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,524,951 - 1,551,103 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1201,521,783 - 1,547,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v020644,646 - 670,860 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.120414,066 - 429,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20414,066 - 431,032 (-)Ensemblpanpan1.1panPan2
TBC1D20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,400,647 - 20,419,652 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,400,791 - 20,419,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,054,600 - 20,073,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02421,093,909 - 21,112,923 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2421,093,893 - 21,112,920 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12420,368,969 - 20,388,211 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02420,475,176 - 20,494,176 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02420,905,480 - 20,924,706 (+)NCBIUU_Cfam_GSD_1.0
Tbc1d20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,603,422 - 169,624,377 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,034,732 - 18,055,767 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,034,776 - 18,055,741 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,760,347 - 34,779,701 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,760,379 - 34,778,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,584,314 - 39,589,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tbc1d20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247411,525,569 - 1,550,806 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247411,525,739 - 1,550,774 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000008546   ⟹   ENSCSAP00000006685
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl256,066,042 - 56,094,333 (+)Ensembl
RefSeq Acc Id: XM_007963086   ⟹   XP_007961277
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1256,065,975 - 56,093,521 (+)NCBI
Vero_WHO_p1.0NW_0236660787,861,563 - 7,886,879 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007961277 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006685
  ENSCSAP00000006685.1
RefSeq Acc Id: XP_007961277   ⟸   XM_007963086
- UniProtKB: A0A0D9RDJ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000006685   ⟸   ENSCSAT00000008546


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010456 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008546.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.1310 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  TBC20/Gyp8-like UniProtKB/TrEMBL
KEGG Report csab:103216010 UniProtKB/TrEMBL
NCBI Gene TBC1D20 ENTREZGENE
PANTHER PTHR20913 UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 20 UniProtKB/TrEMBL
Pfam RabGAP-TBC UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
UniProt A0A0D9RDJ6 ENTREZGENE, UniProtKB/TrEMBL