TBC1D20 (TBC1 domain family member 20) - Rat Genome Database

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Gene: TBC1D20 (TBC1 domain family member 20) Pan paniscus
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Symbol: TBC1D20
Name: TBC1 domain family member 20
RGD ID: 11985140
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN acrosome assembly (ortholog); camera-type eye development (ortholog); COPII-coated vesicle cargo loading (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); Polyglucosan Body Myopathy 1 with or without Immunodeficiency (ortholog); Warburg micro syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); integral component of Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.120414,066 - 429,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20414,066 - 431,032 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v020644,646 - 670,860 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TBC1D20
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.120414,066 - 429,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl20414,066 - 431,032 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v020644,646 - 670,860 (-)NCBIMhudiblu_PPA_v0panPan3
TBC1D20
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl20423,596 - 462,566 (-)EnsemblGRCh38hg38GRCh38
GRCh3820435,480 - 462,543 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3720416,124 - 443,177 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3620364,124 - 391,187 (-)NCBINCBI36hg18NCBI36
Build 3420364,125 - 391,147NCBI
Celera20510,958 - 538,015 (-)NCBI
Cytogenetic Map20p13NCBI
HuRef20367,459 - 394,130 (-)NCBIHuRef
CHM1_120416,126 - 443,204 (-)NCBICHM1_1
Tbc1d20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,135,745 - 152,155,914 (+)NCBIGRCm39mm39
GRCm39 Ensembl2152,135,748 - 152,155,916 (+)Ensembl
GRCm382152,293,826 - 152,313,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2152,293,828 - 152,313,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv372152,119,608 - 152,138,326 (+)NCBIGRCm37mm9NCBIm37
MGSCv362151,985,313 - 152,004,031 (+)NCBImm8
Celera2158,107,984 - 158,126,733 (+)NCBICelera
Cytogenetic Map2G3NCBI
Tbc1d20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23140,768,537 - 140,787,010 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl3140,768,537 - 140,785,121 (+)Ensembl
Rnor_6.03147,772,006 - 147,790,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3147,772,165 - 147,789,158 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03154,120,296 - 154,137,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43142,623,713 - 142,640,197 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13142,529,285 - 142,545,770 (+)NCBI
Celera3139,520,860 - 139,537,468 (+)NCBICelera
Cytogenetic Map3q41NCBI
Tbc1d20
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955597291,541 - 314,292 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955597291,541 - 313,799 (-)NCBIChiLan1.0ChiLan1.0
TBC1D20
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12420,400,647 - 20,419,652 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2420,400,791 - 20,419,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2420,054,600 - 20,073,599 (+)NCBI
ROS_Cfam_1.02421,093,909 - 21,112,923 (+)NCBI
UMICH_Zoey_3.12420,368,969 - 20,388,211 (+)NCBI
UNSW_CanFamBas_1.02420,475,176 - 20,494,176 (+)NCBI
UU_Cfam_GSD_1.02420,905,480 - 20,924,706 (+)NCBI
Tbc1d20
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640169,603,422 - 169,624,377 (+)NCBI
SpeTri2.0NW_00493648518,034,776 - 18,055,741 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBC1D20
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1734,760,379 - 34,779,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11734,760,379 - 34,778,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21739,584,314 - 39,589,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBC1D20
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,065,975 - 56,093,521 (+)NCBI
ChlSab1.1 Ensembl256,066,042 - 56,094,333 (+)Ensembl
Vero_WHO_p1.0NW_0236660787,861,563 - 7,886,879 (-)NCBI
Tbc1d20
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247411,525,739 - 1,550,774 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034947803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000051058   ⟹   ENSPPAP00000028212
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20414,066 - 429,189 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051063   ⟹   ENSPPAP00000028217
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20417,171 - 431,032 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000051065   ⟹   ENSPPAP00000028219
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl20417,171 - 428,360 (-)Ensembl
RefSeq Acc Id: XM_034947803   ⟹   XP_034803694
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v020644,646 - 670,860 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034803694 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_034803694   ⟸   XM_034947803
RefSeq Acc Id: ENSPPAP00000028212   ⟸   ENSPPAT00000051058
RefSeq Acc Id: ENSPPAP00000028219   ⟸   ENSPPAT00000051065
RefSeq Acc Id: ENSPPAP00000028217   ⟸   ENSPPAT00000051063


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037161 Ensembl, ENTREZGENE
NCBI Gene TBC1D20 ENTREZGENE