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Gene: STX1B (syntaxin 1B) Chlorocebus sabaeus

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Symbol:

STX1B

Name:

syntaxin 1B

RGD ID:

18654589

Description:

ENCODES a protein that exhibits protein carrier activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN protein localization to membrane (ortholog); regulation of exocytosis (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autistic disorder (ortholog); Constipation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoplasmic side of membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

syntaxin-1B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX1B (syntaxin 1B)	NCBI	Ortholog
Mus musculus (house mouse):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX1B (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX1B (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX1B (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stx1b (syntaxin 1B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	5	27,989,585 - 28,007,873 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666068	1,769,965 - 1,788,800 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	5	27,683,526 - 27,702,032 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	27,684,082 - 27,694,814 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

attention deficit hyperactivity disorder (ISO)

autistic disorder (ISO)

Constipation (ISO)

Developmental Disabilities (ISO)

Duchenne muscular dystrophy (ISO)

dyslexia (ISO)

epilepsy (ISO)

Febrile Seizures (ISO)

generalized epilepsy (ISO)

generalized epilepsy with febrile seizures plus (ISO)

generalized epilepsy with febrile seizures plus 9 (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

ovarian serous cystadenocarcinoma (ISO)

thymoma (ISO)

Tremor (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion-regulated exocytosis of neurotransmitter (IEA)

exocytic insertion of neurotransmitter receptor to postsynaptic membrane (IEA)

exocytosis (IEA)

intracellular protein transport (IEA)

negative regulation of synaptic vesicle recycling (IEA)

positive regulation of excitatory postsynaptic potential (IEA)

positive regulation of neurotransmitter secretion (IEA)

positive regulation of spontaneous neurotransmitter secretion (IEA)

protein localization to membrane (ISO)

regulation of exocytosis (ISO)

regulation of gene expression (IEA)

regulation of synaptic vesicle priming (IEA)

spontaneous neurotransmitter secretion (IEA)

synaptic vesicle exocytosis (IEA)

synaptic vesicle fusion to presynaptic active zone membrane (IEA)

vesicle fusion (IEA)

vesicle-mediated transport (IEA,ISO)

Cellular Component

axon (IEA)

centrosome (ISO)

cytoplasm (ISO)

cytoplasmic side of membrane (ISO)

endomembrane system (IEA)

membrane (IEA)

neuromuscular junction (IEA)

nuclear lamina (ISO)

nucleoplasm (ISO)

nucleus (ISO)

plasma membrane (IEA)

presynapse (IEA)

presynaptic active zone membrane (IEA)

presynaptic membrane (ISO)

SNARE complex (IEA)

synaptic vesicle (IEA)

Molecular Function

protein carrier activity (ISO)

protein domain specific binding (ISO)

protein kinase binding (IEA)

signaling receptor binding (IEA)

SNAP receptor activity (IEA)

SNARE binding (IEA)

vesicle docking activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

STX1B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	5	27,989,585 - 28,007,873 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666068	1,769,965 - 1,788,800 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	5	27,683,526 - 27,702,032 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	27,684,082 - 27,694,814 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM

STX1B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	30,989,256 - 31,010,638 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	30,989,256 - 31,010,897 (-)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	16	31,000,577 - 31,021,959 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	30,910,869 - 30,929,276 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	30,910,868 - 30,929,276	NCBI
Celera	16	29,275,546 - 29,296,879 (+)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	28,563,033 - 28,574,857 (-)	NCBI		HuRef
CHM1_1	16	32,317,577 - 32,338,829 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	31,376,698 - 31,398,083 (-)	NCBI		T2T-CHM13v2.0

Stx1b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	127,403,072 - 127,423,703 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	127,403,072 - 127,424,146 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	127,803,900 - 127,824,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	127,803,900 - 127,824,549 (-)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	7	134,950,358 - 134,968,045 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	127,598,364 - 127,615,438 (-)	NCBI		MGSCv36	mm8
Celera	7	127,641,815 - 127,659,486 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.75	NCBI

Stx1b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	191,846,016 - 191,864,878 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	191,833,743 - 191,871,633 (-)	Ensembl				GRCr8
mRatBN7.2	1	182,415,544 - 182,434,385 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	182,415,546 - 182,441,280 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	190,768,540 - 190,784,704 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,954,630 - 197,970,797 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	190,625,066 - 190,641,183 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	191,162,169 - 191,178,307 (-)	NCBI
Lyon_Normotensive	1	196,164,417 - 196,180,581 (-)	NCBI
Lyon_Hypertensive	1	192,831,950 - 192,848,115 (-)	NCBI
F344_StmMcwi	1	191,122,287 - 191,138,415 (-)	NCBI
Rnor_6.0	1	199,251,842 - 199,270,465 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	199,251,844 - 199,270,627 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	1	206,276,724 - 206,292,888 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	187,092,014 - 187,108,481 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	180,069,042 - 180,085,214 (-)	NCBI		Celera
RGSC_v3.1	1	187,239,062 - 187,258,524 (-)	NCBI
Cytogenetic Map	1	q37	NCBI

Stx1b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	7,838,684 - 7,857,700 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955493	7,838,684 - 7,857,700 (-)	NCBI	ChiLan1.0	ChiLan1.0

STX1B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	34,195,264 - 34,218,552 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	38,996,671 - 39,019,969 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	23,956,426 - 23,979,646 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	31,356,907 - 31,378,864 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	31,356,907 - 31,378,870 (-)	Ensembl		PanPan1.1 Ensembl	panPan2	panpan1.1

STX1B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	17,209,972 - 17,219,903 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	17,210,433 - 17,241,363 (+)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	18,777,682 - 18,795,209 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	17,332,948 - 17,350,471 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	17,333,052 - 17,350,471 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	17,133,312 - 17,150,823 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,052,453 - 17,069,975 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	17,364,988 - 17,382,509 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stx1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	10	123,788,456 - 123,806,828 (+)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024409344	125,272,960 - 125,280,193 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	13,370,452 - 13,378,120 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	13,370,678 - 13,378,933 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	17,439,581 - 17,459,516 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	3	17,439,563 - 17,459,517 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	17,848,121 - 17,856,072 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Stx1b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	14,054,762 - 14,073,890 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624782	14,057,346 - 14,073,911 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl

Stx1b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	74,081,584 - 74,097,853 (+)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in STX1B
383 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007990460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000003782 ⟹ ENSCSAP00000002058

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	5	27,684,082 - 27,694,814 (-)	Ensembl

RefSeq Acc Id:

XM_007990460 ⟹ XP_007988651

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
mChlSab1.0.hap1	5	27,989,585 - 28,007,873 (-)	NCBI
Vero_WHO_p1.0	NW_023666068	1,769,965 - 1,788,800 (+)	NCBI
ChlSab1.1	5	27,683,526 - 27,702,032 (-)	NCBI

Sequence:

show sequence

CGAGGCGGGAGACCGGGAGCAGCAACAGAGGCAGGAGGACGAGGAGGAGGAGGAGGAGCCGTCG
CAGGATGAAGGATCGGACTCAGGAGCTGCGGAGTGCGAAAGACAGTGATGATGAAGAGGAGGTG
GTCCACGTGGATCGGGACCACTTCATGGATGAGTTCTTTGAACAGGTGGAAGAGATCCGGGGCT
GCATTGAGAAACTGTCGGAGGATGTGGAGCAGGTGAAAAAACAGCATAGCGCCATCCTGGCTGC
CCCCAACCCAGATGAGAAGACCAAACAGGAGCTGGAGGACCTCACTGCAGACATCAAGAAGACG
GCCAACAAGGTTCGGTCCAAATTGAAAGCGATCGAGCAAAGCATTGAACAGGAGGAGGGGCTCA
ACCGTTCCTCCGCGGACCTGCGCATCCGCAAGACCCAGCACTCCACACTGTCCCGGAAGTTCGT
GGAGGTAATGACCGAATATAACGCGACCCAGTCCAAGTACCGGGACCGCTGCAAGGACCGGATC
CAGCGGCAACTGGAGATCACTGGAAGGACCACCACCAACGAAGAACTGGAAGACATGCTGGAGA
GCGGGAAGCTGGCTATCTTCACAGATGACATCAAAATGGACTCACAGATGACGAAGCAGGCGCT
GAATGAGATCGAGACAAGGCACAATGAGATCATCAAGCTGGAAACCAGCATCCGTGAGCTGCAC
GACATGTTTGTGGACATGGCCATGCTTGTAGAGAGCCAGGGAGAGATGATTGACCGCATCGAGT
ACAACGTGGAACATTCTGTAGACTACGTGGAGCGAGCTGTGTCTGACACCAAGAAAGCAGTGAA
ATATCAGAGCAAGGCCCGGAGGAAGAAAATCATGATCATCATTTGCTGTGTGGTGCTGGGGGTG
GTCTTGGCGTCATCCATTGGGGGGACGCTGGGCTTGTAGGCCCCCCACCCTTCTCTCTCCCAGA
CCCCTCCCCCACCACATCGGGAGCAATACCCCCACCACCCCTTTCACTCCATCCCCTGCTCCAG
GCTCACCCCCAAAACAGACCCAGGCAGCCCCACCCCTCCTCCACCCCCATGGCAGACCCTGGTG
TCCCTGGACCTTACCCGGCCATGGACCTCCCTGCCCCCGCACGTAGATCGCAGCAGGCGTGATT
ACACATGCACACCAACATGCATGCCGCCGGCACATGCTCAAGACGTGTGGACACCCCAGCGTGT
GTGTGCGTGTGATGTGTGTGATGCACCAGAGCACCCCCCTGACCCCGCCTCGGGTATGTGTGCG
TGGTCTGAGCTTCCCCCTTCACCGGGGCTGTTGTGTAGACTGCAGCCGAGTGTAACACAGCTGC
CCACCACGCCCCTCTCTGTCCTCTGTGAACGGTGTGTGTGTGTGAGTGAGACCACAGATCTGTG
GACACGCCATTCGTGTACGTGGAATTTTGTGTTTGAGTGTTTGAACCTAATGCAACAGCAACAA
AGCCACTGATACC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007988651	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000002058
	ENSCSAP00000002058.1

RefSeq Acc Id:	XP_007988651 ⟸ XM_007990460
- UniProtKB:	A0A0D9R0B9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000002058 ⟸ ENSCSAT00000003782

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005756	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003782.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
	1.20.58.70	UniProtKB/TrEMBL
InterPro	SNARE	UniProtKB/TrEMBL
	Syntaxin	UniProtKB/TrEMBL
	Syntaxin/epimorphin_CS	UniProtKB/TrEMBL
	Syntaxin_N	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
NCBI Gene	STX1B	ENTREZGENE
PANTHER	PTHR19957	UniProtKB/TrEMBL
	PTHR19957:SF334	UniProtKB/TrEMBL
Pfam	SNARE	UniProtKB/TrEMBL
	Syntaxin	UniProtKB/TrEMBL
PROSITE	SYNTAXIN	UniProtKB/TrEMBL
	T_SNARE	UniProtKB/TrEMBL
SMART	SynN	UniProtKB/TrEMBL
	t_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47661	UniProtKB/TrEMBL
UniProt	A0A0D9R0B9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - CTD

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