STX1B (syntaxin 1B) - Rat Genome Database
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Gene: STX1B (syntaxin 1B) Chlorocebus sabaeus
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Symbol: STX1B
Name: syntaxin 1B
RGD ID: 18654589
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); protein kinase binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN calcium ion-regulated exocytosis of neurotransmitter (ortholog); exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); negative regulation of synaptic vesicle recycling (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); Duchenne muscular dystrophy (ortholog); epilepsy (ortholog); FOUND IN axon (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntaxin-1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,683,526 - 27,702,032 (-)NCBI
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)Ensembl
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
STX1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,683,526 - 27,702,032 (-)NCBI
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)Ensembl
STX1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1630,989,256 - 31,010,638 (-)EnsemblGRCh38hg38GRCh38
GRCh381630,989,256 - 31,010,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,000,577 - 31,021,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,910,869 - 30,929,276 (-)NCBINCBI36hg18NCBI36
Build 341630,910,868 - 30,929,276NCBI
Celera1629,275,546 - 29,296,879 (+)NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,563,033 - 28,574,857 (-)NCBIHuRef
CHM1_11632,317,577 - 32,338,959 (-)NCBICHM1_1
Stx1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,403,072 - 127,423,703 (-)NCBIGRCm39mm39
GRCm387127,803,900 - 127,824,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,803,900 - 127,824,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,950,358 - 134,968,045 (-)NCBIGRCm37mm9NCBIm37
MGSCv367127,598,364 - 127,615,438 (-)NCBImm8
Celera7127,641,815 - 127,659,486 (-)NCBICelera
Cytogenetic Map7F3NCBI
Stx1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01199,251,842 - 199,270,465 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,251,844 - 199,270,627 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,276,724 - 206,292,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,092,014 - 187,108,481 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,239,062 - 187,258,524 (-)NCBI
Celera1180,069,042 - 180,085,214 (-)NCBICelera
Cytogenetic Map1q37NCBI
Stx1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,838,684 - 7,857,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,838,684 - 7,857,700 (-)NCBIChiLan1.0ChiLan1.0
STX1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,356,907 - 31,378,864 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,356,907 - 31,378,870 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,956,426 - 23,979,646 (+)NCBIMhudiblu_PPA_v0panPan3
STX1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1617,209,972 - 17,219,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Stx1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493650113,370,678 - 13,378,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,439,581 - 17,459,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,439,563 - 17,459,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,848,121 - 17,856,072 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Stx1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,054,762 - 14,073,890 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 18 58
Low 18 16 2
Below cutoff 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007990460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000003782   ⟹   ENSCSAP00000002058
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)Ensembl
RefSeq Acc Id: XM_007990460   ⟹   XP_007988651
RefSeq Status:
Type: CODING
Position:
Vervet AssemblyChrPosition (strand)Source
ChlSab1.1527,683,526 - 27,702,032 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007988651 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_007988651   ⟸   XM_007990460
RefSeq Acc Id: ENSCSAP00000002058   ⟸   ENSCSAT00000003782


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005756 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCSAP00000002058 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003782 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  STX1 UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene STX1B ENTREZGENE
PANTHER PTHR19957:SF84 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A0D9R0B9_CHLSB UniProtKB/TrEMBL