STX1B (syntaxin 1B) - Rat Genome Database

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Gene: STX1B (syntaxin 1B) Canis lupus familiaris
Analyze
Symbol: STX1B
Name: syntaxin 1B
RGD ID: 12414533
Description: ENCODES a protein that exhibits protein carrier activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN protein localization to membrane (ortholog); regulation of exocytosis (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autistic disorder (ortholog); Constipation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoplasmic side of membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: STX1B2; syntaxin 1B2; syntaxin-1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,209,972 - 17,219,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha618,777,682 - 18,795,209 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0617,332,948 - 17,350,471 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,333,052 - 17,350,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,133,312 - 17,150,823 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,052,453 - 17,069,975 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,364,988 - 17,382,509 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STX1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,209,972 - 17,219,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha618,777,682 - 18,795,209 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0617,332,948 - 17,350,471 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,333,052 - 17,350,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,133,312 - 17,150,823 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,052,453 - 17,069,975 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,364,988 - 17,382,509 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
STX1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,989,256 - 31,010,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,989,256 - 31,010,897 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371631,000,577 - 31,021,959 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,910,869 - 30,929,276 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341630,910,868 - 30,929,276NCBI
Celera1629,275,546 - 29,296,879 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,563,033 - 28,574,857 (-)NCBIHuRef
CHM1_11632,317,577 - 32,338,829 (-)NCBICHM1_1
T2T-CHM13v2.01631,376,698 - 31,398,083 (-)NCBIT2T-CHM13v2.0
Stx1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,403,072 - 127,423,703 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,403,072 - 127,424,146 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm387127,803,900 - 127,824,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,803,900 - 127,824,549 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv377134,950,358 - 134,968,045 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367127,598,364 - 127,615,438 (-)NCBIMGSCv36mm8
Celera7127,641,815 - 127,659,486 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.75NCBI
Stx1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,846,016 - 191,864,878 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1191,833,743 - 191,871,633 (-)EnsemblGRCr8
mRatBN7.21182,415,544 - 182,434,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,415,546 - 182,441,280 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,768,540 - 190,784,704 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,954,630 - 197,970,797 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,625,066 - 190,641,183 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1191,162,169 - 191,178,307 (-)NCBI
Lyon_Normotensive1196,164,417 - 196,180,581 (-)NCBI
Lyon_Hypertensive1192,831,950 - 192,848,115 (-)NCBI
F344_StmMcwi1191,122,287 - 191,138,415 (-)NCBI
Rnor_6.01199,251,842 - 199,270,465 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,251,844 - 199,270,627 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01206,276,724 - 206,292,888 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41187,092,014 - 187,108,481 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1180,069,042 - 180,085,214 (-)NCBICelera
RGSC_v3.11187,239,062 - 187,258,524 (-)NCBI
Cytogenetic Map1q37NCBI
Stx1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,838,684 - 7,857,700 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554937,838,684 - 7,857,700 (-)NCBIChiLan1.0ChiLan1.0
STX1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,195,264 - 34,218,552 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,996,671 - 39,019,969 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,956,426 - 23,979,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,356,907 - 31,378,864 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,356,907 - 31,378,870 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
Stx1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap110123,788,456 - 123,806,828 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024409344125,272,960 - 125,280,193 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,370,452 - 13,378,120 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,370,678 - 13,378,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,974,127 - 10,991,873 (-)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1310,974,127 - 10,991,846 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,670,296 - 10,688,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STX1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1527,989,585 - 28,007,873 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660681,769,965 - 1,788,800 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1527,683,526 - 27,702,032 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Stx1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,054,762 - 14,073,890 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462478214,057,346 - 14,073,911 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Stx1b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1274,081,584 - 74,097,853 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in STX1B
94 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000026565   ⟹   ENSCAFP00000024672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000079998   ⟹   ENSCAFP00000050537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,433 - 17,217,234 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000085274   ⟹   ENSCAFP00000065093
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,720 - 17,217,537 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000090306   ⟹   ENSCAFP00000061005
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,720 - 17,217,234 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845022736   ⟹   ENSCAFP00845017829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl617,333,052 - 17,350,471 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845022775   ⟹   ENSCAFP00845017857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl617,341,010 - 17,350,471 (+)Ensembl
RefSeq Acc Id: XM_038478529   ⟹   XP_038334457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1617,133,312 - 17,150,823 (+)NCBI
RefSeq Acc Id: XM_038539780   ⟹   XP_038395708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0617,364,988 - 17,382,509 (+)NCBI
RefSeq Acc Id: XM_038542446   ⟹   XP_038398374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha618,777,682 - 18,795,209 (+)NCBI
RefSeq Acc Id: XM_038603860   ⟹   XP_038459788
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0617,052,453 - 17,069,975 (+)NCBI
RefSeq Acc Id: XM_038668584   ⟹   XP_038524512
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0617,332,948 - 17,350,471 (+)NCBI
Ensembl Acc Id: ENSCAFP00000050537   ⟸   ENSCAFT00000079998
Ensembl Acc Id: ENSCAFP00000061005   ⟸   ENSCAFT00000090306
Ensembl Acc Id: ENSCAFP00000024672   ⟸   ENSCAFT00000026565
Ensembl Acc Id: ENSCAFP00000065093   ⟸   ENSCAFT00000085274
RefSeq Acc Id: XP_038334457   ⟸   XM_038478529
RefSeq Acc Id: XP_038459788   ⟸   XM_038603860
RefSeq Acc Id: XP_038524512   ⟸   XM_038668584
- UniProtKB: A0A8I3NPQ4 (UniProtKB/TrEMBL),   A0A8C0L090 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038398374   ⟸   XM_038542446
- UniProtKB: A0A8I3NPQ4 (UniProtKB/TrEMBL),   A0A8C0L090 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395708   ⟸   XM_038539780
- UniProtKB: A0A8C0L090 (UniProtKB/TrEMBL),   A0A8I3NPQ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845017857   ⟸   ENSCAFT00845022775
Ensembl Acc Id: ENSCAFP00845017829   ⟸   ENSCAFT00845022736
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016780 Ensembl
  ENSCAFG00845012794 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845022736 ENTREZGENE
  ENSCAFT00845022736.1 UniProtKB/TrEMBL
  ENSCAFT00845022775.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.70 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report cfa:489918 UniProtKB/TrEMBL
NCBI Gene STX1B ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  PTHR19957:SF334 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A8C0L090 ENTREZGENE
  A0A8I3NHU0_CANLF UniProtKB/TrEMBL
  A0A8I3NPQ4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:49723 ENTREZGENE