STX1B (syntaxin 1B) - Rat Genome Database
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Gene: STX1B (syntaxin 1B) Canis lupus familiaris
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Symbol: STX1B
Name: syntaxin 1B
RGD ID: 12414533
Description: ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN negative regulation of synaptic vesicle recycling (ortholog); positive regulation of neurotransmitter secretion (ortholog); protein localization to membrane (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); Duchenne muscular dystrophy (ortholog); epilepsy (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: STX1B2; syntaxin 1B2; syntaxin-1B
Orthologs:
Homo sapiens (human) : STX1B (syntaxin 1B)  HGNC  Alliance
Mus musculus (house mouse) : Stx1b (syntaxin 1B)  MGI  Alliance
Rattus norvegicus (Norway rat) : Stx1b (syntaxin 1B)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Stx1b (syntaxin 1B)
Pan paniscus (bonobo/pygmy chimpanzee) : STX1B (syntaxin 1B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Stx1b (syntaxin 1B)
Sus scrofa (pig) : STX1A (syntaxin 1A)
Chlorocebus sabaeus (African green monkey) : STX1B (syntaxin 1B)
Heterocephalus glaber (naked mole-rat) : Stx1b (syntaxin 1B)
more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1617,209,972 - 17,219,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
STX1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1617,209,972 - 17,219,903 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
STX1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1630,989,256 - 31,010,638 (-)EnsemblGRCh38hg38GRCh38
GRCh381630,989,256 - 31,010,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,000,577 - 31,021,829 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,910,869 - 30,929,276 (-)NCBINCBI36hg18NCBI36
Build 341630,910,868 - 30,929,276NCBI
Celera1629,275,546 - 29,296,879 (+)NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,563,033 - 28,574,857 (-)NCBIHuRef
CHM1_11632,317,577 - 32,338,959 (-)NCBICHM1_1
Stx1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,403,072 - 127,423,703 (-)NCBI
GRCm387127,803,900 - 127,824,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,803,900 - 127,824,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,950,358 - 134,968,045 (-)NCBIGRCm37mm9NCBIm37
MGSCv367127,598,364 - 127,615,438 (-)NCBImm8
Celera7127,641,815 - 127,659,486 (-)NCBICelera
Cytogenetic Map7F3NCBI
Stx1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01199,251,842 - 199,270,465 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,251,844 - 199,270,627 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,276,724 - 206,292,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,092,014 - 187,108,481 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,239,062 - 187,258,524 (-)NCBI
Celera1180,069,042 - 180,085,214 (-)NCBICelera
Cytogenetic Map1q37NCBI
Stx1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,838,684 - 7,857,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,838,684 - 7,857,700 (-)NCBIChiLan1.0ChiLan1.0
STX1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,356,907 - 31,378,864 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,356,907 - 31,378,870 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,956,426 - 23,979,646 (+)NCBIMhudiblu_PPA_v0panPan3
Stx1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493650113,370,678 - 13,378,933 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl310,974,126 - 10,991,874 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1310,974,127 - 10,991,846 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2310,670,296 - 10,688,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STX1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)Ensembl
ChlSab1.1527,683,526 - 27,702,032 (-)NCBI
Stx1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,054,762 - 14,073,890 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 2 8
Low 4 17 6 1 6 3 4 3
Below cutoff 1 5 3 5 3 6 8 7 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022420669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX03004381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000026565   ⟹   ENSCAFP00000024672
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,433 - 17,241,363 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079998   ⟹   ENSCAFP00000050537
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,433 - 17,217,234 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000085274   ⟹   ENSCAFP00000065093
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,720 - 17,217,537 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000090306   ⟹   ENSCAFP00000061005
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl617,210,720 - 17,217,234 (+)Ensembl
RefSeq Acc Id: XM_022420669   ⟹   XP_022276377
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1617,209,972 - 17,219,903 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_022276377 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_022276377   ⟸   XM_022420669
- Sequence:
RefSeq Acc Id: ENSCAFP00000050537   ⟸   ENSCAFT00000079998
RefSeq Acc Id: ENSCAFP00000061005   ⟸   ENSCAFT00000090306
RefSeq Acc Id: ENSCAFP00000024672   ⟸   ENSCAFT00000026565
RefSeq Acc Id: ENSCAFP00000065093   ⟸   ENSCAFT00000085274

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000016780 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000024672 UniProtKB/TrEMBL
  ENSCAFP00000050537 UniProtKB/TrEMBL
  ENSCAFP00000061005 UniProtKB/TrEMBL
  ENSCAFP00000065093 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000026565 UniProtKB/TrEMBL
  ENSCAFT00000079998 UniProtKB/TrEMBL
  ENSCAFT00000085274 UniProtKB/TrEMBL
  ENSCAFT00000090306 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  STX1 UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene STX1B ENTREZGENE
PANTHER PTHR19957:SF84 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A5F4C8E5_CANLF UniProtKB/TrEMBL
  A0A5F4D871_CANLF UniProtKB/TrEMBL
  A0A5F4DJQ1_CANLF UniProtKB/TrEMBL
  F1PGE7_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:49723 ENTREZGENE