STX1B (syntaxin 1B) - Rat Genome Database

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Gene: STX1B (syntaxin 1B) Sus scrofa
Analyze
Symbol: STX1B
Name: syntaxin 1B
RGD ID: 14019821
Description: ENCODES a protein that exhibits cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity (ortholog); INVOLVED IN B cell chemotaxis (ortholog); cholesterol catabolic process (ortholog); liver regeneration (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); epilepsy (ortholog); Febrile Seizures (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear lamina (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: syntaxin-1B
RGD Orthologs
Human
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,439,581 - 17,459,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,439,563 - 17,459,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,848,121 - 17,856,072 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STX1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,439,581 - 17,459,516 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,439,563 - 17,459,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,848,121 - 17,856,072 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STX1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,989,256 - 31,010,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,989,256 - 31,010,638 (-)EnsemblGRCh38hg38GRCh38
GRCh371631,000,577 - 31,021,959 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,910,869 - 30,929,276 (-)NCBINCBI36Build 36hg18NCBI36
Build 341630,910,868 - 30,929,276NCBI
Celera1629,275,546 - 29,296,879 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,563,033 - 28,574,857 (-)NCBIHuRef
CHM1_11632,317,577 - 32,338,829 (-)NCBICHM1_1
T2T-CHM13v2.01631,376,698 - 31,398,083 (-)NCBIT2T-CHM13v2.0
STX1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,683,526 - 27,702,032 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,684,082 - 27,694,814 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,769,965 - 1,788,800 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478214,057,346 - 14,073,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478214,054,762 - 14,073,890 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in STX1B
500 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system reproductive system respiratory system
High
Medium 19
Low 2 2 3 4 4 3
Below cutoff 8 1 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000029053   ⟹   ENSSSCP00000023858
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl317,439,581 - 17,459,516 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000072674   ⟹   ENSSSCP00000068304
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl317,447,819 - 17,459,516 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083613   ⟹   ENSSSCP00000059988
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl317,439,581 - 17,457,654 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000106101   ⟹   ENSSSCP00000074829
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl317,447,819 - 17,457,654 (+)Ensembl
RefSeq Acc Id: XM_013987714   ⟹   XP_013843168
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1317,445,172 - 17,459,517 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086411   ⟹   XP_020942070
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1317,439,563 - 17,459,517 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020942070   ⟸   XM_021086411
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TG69 (UniProtKB/TrEMBL),   I3LIF3 (UniProtKB/TrEMBL),   A0A8D0XWW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843168   ⟸   XM_013987714
- Peptide Label: isoform X2
- UniProtKB: A0A8D1BIP1 (UniProtKB/TrEMBL),   A0A8D0MYG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000059988   ⟸   ENSSSCT00000083613
RefSeq Acc Id: ENSSSCP00000023858   ⟸   ENSSSCT00000029053
RefSeq Acc Id: ENSSSCP00000068304   ⟸   ENSSSCT00000072674
RefSeq Acc Id: ENSSSCP00000074829   ⟸   ENSSSCT00000106101
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021238 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015019895 UniProtKB/TrEMBL
  ENSSSCG00025048076 UniProtKB/TrEMBL
  ENSSSCG00030066442 UniProtKB/TrEMBL
  ENSSSCG00035078025 UniProtKB/TrEMBL
  ENSSSCG00040071486 UniProtKB/TrEMBL
  ENSSSCG00045036199 UniProtKB/TrEMBL
  ENSSSCG00050076814 UniProtKB/TrEMBL
  ENSSSCG00055029929 UniProtKB/TrEMBL
  ENSSSCG00060020947 UniProtKB/TrEMBL
  ENSSSCG00065078756 UniProtKB/TrEMBL
  ENSSSCG00070009635 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029053 ENTREZGENE
  ENSSSCT00000029053.2 UniProtKB/TrEMBL
  ENSSSCT00000083613.2 UniProtKB/TrEMBL
  ENSSSCT00000106101.1 UniProtKB/TrEMBL
  ENSSSCT00015026643.1 UniProtKB/TrEMBL
  ENSSSCT00015026730.1 UniProtKB/TrEMBL
  ENSSSCT00025065399.1 UniProtKB/TrEMBL
  ENSSSCT00025065765.1 UniProtKB/TrEMBL
  ENSSSCT00030092834.1 UniProtKB/TrEMBL
  ENSSSCT00030092858.1 UniProtKB/TrEMBL
  ENSSSCT00030092887.1 UniProtKB/TrEMBL
  ENSSSCT00035106382.1 UniProtKB/TrEMBL
  ENSSSCT00035106390.1 UniProtKB/TrEMBL
  ENSSSCT00035106494.1 UniProtKB/TrEMBL
  ENSSSCT00035106560.1 UniProtKB/TrEMBL
  ENSSSCT00035106675.1 UniProtKB/TrEMBL
  ENSSSCT00040098256.1 UniProtKB/TrEMBL
  ENSSSCT00040098358.1 UniProtKB/TrEMBL
  ENSSSCT00040098444.1 UniProtKB/TrEMBL
  ENSSSCT00045062219.1 UniProtKB/TrEMBL
  ENSSSCT00045062275.1 UniProtKB/TrEMBL
  ENSSSCT00050105596.1 UniProtKB/TrEMBL
  ENSSSCT00050105602.1 UniProtKB/TrEMBL
  ENSSSCT00055059501.1 UniProtKB/TrEMBL
  ENSSSCT00055059529.1 UniProtKB/TrEMBL
  ENSSSCT00055059552.1 UniProtKB/TrEMBL
  ENSSSCT00060028393.1 UniProtKB/TrEMBL
  ENSSSCT00060028397.1 UniProtKB/TrEMBL
  ENSSSCT00065109434.1 UniProtKB/TrEMBL
  ENSSSCT00065109439.1 UniProtKB/TrEMBL
  ENSSSCT00065109444.1 UniProtKB/TrEMBL
  ENSSSCT00065109456.1 UniProtKB/TrEMBL
  ENSSSCT00070018699.1 UniProtKB/TrEMBL
  ENSSSCT00070018704.1 UniProtKB/TrEMBL
  ENSSSCT00070018731.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.70 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene STX1B ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  PTHR19957:SF334 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A4X1TG69 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TK88_PIG UniProtKB/TrEMBL
  A0A4X1TKB0_PIG UniProtKB/TrEMBL
  A0A5G2Q9K0_PIG UniProtKB/TrEMBL
  A0A8D0MYG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XW88_PIG UniProtKB/TrEMBL
  A0A8D0XWW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BIP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BMJ7_PIG UniProtKB/TrEMBL
  A0A8D1FVG8_PIG UniProtKB/TrEMBL
  A0A8D1J6B5_PIG UniProtKB/TrEMBL
  A0A8W4F6N2_PIG UniProtKB/TrEMBL
  I3LIF3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98352 ENTREZGENE