ATP6V1B1 (ATPase H+ transporting V1 subunit B1) - Rat Genome Database

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Gene: ATP6V1B1 (ATPase H+ transporting V1 subunit B1) Chlorocebus sabaeus
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Symbol: ATP6V1B1
Name: ATPase H+ transporting V1 subunit B1
RGD ID: 18371753
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN adult behavior (ortholog); ATP metabolic process (ortholog); chloride ion homeostasis (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Distal Renal Tubular Acidosis (ortholog); Distal Renal Tubular Acidosis 2 with Progressive Nerve Deafness (ortholog); FOUND IN basolateral plasma membrane (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit B, kidney isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,149,074 - 36,179,145 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,149,006 - 36,177,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,844,812 - 75,873,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ATP6V1B1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,149,074 - 36,179,145 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,149,006 - 36,177,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,844,812 - 75,873,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ATP6V1B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,935,900 - 70,965,431 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,935,900 - 70,965,431 (+)EnsemblGRCh38hg38GRCh38
GRCh37271,163,030 - 71,192,561 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,016,506 - 71,046,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 34271,074,674 - 71,104,207NCBI
Celera271,013,684 - 71,043,243 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,899,497 - 70,928,997 (+)NCBIHuRef
CHM1_1271,092,347 - 71,121,872 (+)NCBICHM1_1
T2T-CHM13v2.0270,946,950 - 70,976,433 (+)NCBIT2T-CHM13v2.0
Atp6v1b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,719,999 - 83,735,837 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,719,972 - 83,735,837 (+)EnsemblGRCm39 Ensembl
GRCm38683,743,017 - 83,758,855 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,742,990 - 83,758,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,693,011 - 83,708,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,708,675 - 83,724,468 (+)NCBIMGSCv36mm8
Celera685,725,645 - 85,742,032 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
Atp6v1b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,781,444 - 117,800,103 (+)NCBIGRCr8
mRatBN7.24116,223,799 - 116,242,475 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,223,799 - 116,242,475 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,702,538 - 121,721,050 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,477,711 - 117,496,243 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,091,403 - 116,109,889 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,417,100 - 115,435,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,416,580 - 115,437,206 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,004,952 - 180,024,878 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,931,972 - 117,950,626 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14118,176,425 - 118,194,509 (+)NCBI
Celera4105,216,251 - 105,234,921 (+)NCBICelera
Cytogenetic Map4q34NCBI
Atp6v1b1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,256,096 - 14,282,410 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,256,096 - 14,281,572 (-)NCBIChiLan1.0ChiLan1.0
ATP6V1B1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21255,422,316 - 55,451,990 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A55,415,443 - 55,455,984 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A71,000,096 - 71,030,306 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A72,113,863 - 72,143,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,113,859 - 72,143,612 (+)Ensemblpanpan1.1panPan2
ATP6V1B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11069,261,311 - 69,287,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1069,252,926 - 69,287,542 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1069,150,000 - 69,176,357 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01070,284,983 - 70,311,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1070,284,465 - 70,311,193 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11070,008,448 - 70,034,801 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01070,265,123 - 70,291,413 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,570,051 - 70,596,395 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1b1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629213,431,918 - 13,458,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649115,112,321 - 15,139,525 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649115,112,422 - 15,138,716 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1B1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,561,236 - 71,591,845 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,560,102 - 71,591,885 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,019,974 - 75,027,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Atp6v1b1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247622,443,765 - 2,480,464 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247622,445,840 - 2,480,377 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 23 14 35
Below cutoff 13 3 25

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007970306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000013306   ⟹   ENSCSAP00000011311
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1436,149,006 - 36,177,671 (-)Ensembl
RefSeq Acc Id: XM_007970306   ⟹   XP_007968497
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11436,149,074 - 36,179,145 (-)NCBI
Vero_WHO_p1.0NW_02366604575,844,812 - 75,873,514 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007968497 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011311
  ENSCSAP00000011311.1
Reference Protein Sequences
RefSeq Acc Id: XP_007968497   ⟸   XM_007970306
- UniProtKB: A0A0D9RRS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011311   ⟸   ENSCSAT00000013306


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015215 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013306.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.12240 UniProtKB/TrEMBL
InterPro ATPase_a/bsu_AS UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_nucl-bd UniProtKB/TrEMBL
  ATPase_V1-cplx_bsu UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  V-ATPase_su_B/beta UniProtKB/TrEMBL
KEGG Report csab:103220084 UniProtKB/TrEMBL
NCBI Gene ATP6V1B1 ENTREZGENE
PANTHER PTHR43389 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT B, KIDNEY ISOFORM UniProtKB/TrEMBL
Pfam ATP-synt_ab UniProtKB/TrEMBL
  ATP-synt_ab_N UniProtKB/TrEMBL
PIRSF V-ATPsynth_beta/V-ATPase_B UniProtKB/TrEMBL
PROSITE ATPASE_ALPHA_BETA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RRS2 ENTREZGENE, UniProtKB/TrEMBL