SYT9 (synaptotagmin 9) - Rat Genome Database

Name: SYT9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: SYT9 (synaptotagmin 9) Chlorocebus sabaeus

Analyze

Symbol:

SYT9

Name:

synaptotagmin 9

RGD ID:

18752946

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN calcium-dependent activation of synaptic vesicle fusion (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); regulation of calcium ion-dependent exocytosis (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; insulin secretion pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN dense core granule (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); secretory granule (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synaptotagmin-9

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYT9 (synaptotagmin 9)	NCBI	Ortholog
Mus musculus (house mouse):	Syt9 (synaptotagmin IX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Syt9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Syt9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYT9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYT9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Syt9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYT9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Syt9 (synaptotagmin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	57,375,933 - 57,587,370 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	57,376,232 - 57,587,368 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,222 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-dependent activation of synaptic vesicle fusion (ISO)

calcium-ion regulated exocytosis (IEA)

cellular response to calcium ion (IEA)

positive regulation of calcium ion-dependent exocytosis (ISO)

regulation of calcium ion-dependent exocytosis (IEA,ISO)

regulation of dopamine secretion (IEA)

regulation of insulin secretion (ISO)

Cellular Component

dense core granule (IEA,ISO)

exocytic vesicle (IEA)

hippocampal mossy fiber to CA3 synapse (ISO)

membrane (IEA)

plasma membrane (IEA)

secretory granule (ISO)

synaptic vesicle membrane (ISO)

Molecular Function

calcium ion binding (IEA)

calcium-dependent phospholipid binding (IEA)

clathrin binding (IEA)

identical protein binding (ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

phosphatidylserine binding (IEA)

protein binding (ISO)

SNARE binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (ISO)

insulin secretion pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SYT9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	57,375,933 - 57,587,370 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	57,376,232 - 57,587,368 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,222 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SYT9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	7,238,778 - 7,469,043 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	7,238,778 - 7,469,043 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	7,273,135 - 7,490,274 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	7,229,757 - 7,446,849 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	7,229,756 - 7,446,844	NCBI
Celera	11	7,392,278 - 7,609,358 (+)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	6,931,552 - 7,148,808 (+)	NCBI		HuRef
CHM1_1	11	7,272,108 - 7,489,194 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	7,297,482 - 7,527,410 (+)	NCBI		T2T-CHM13v2.0

Syt9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	106,969,929 - 107,147,863 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	106,969,935 - 107,147,863 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	107,370,349 - 107,548,656 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	107,370,728 - 107,548,656 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	114,514,304 - 114,692,169 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	107,161,967 - 107,339,832 (+)	NCBI		MGSCv36	mm8
Celera	7	107,353,714 - 107,524,578 (+)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	56.33	NCBI

Syt9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	170,687,666 - 170,868,146 (+)	NCBI		GRCr8
mRatBN7.2	1	161,275,882 - 161,456,384 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	161,275,734 - 161,455,007 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	169,545,386 - 169,723,290 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	176,731,378 - 176,909,284 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	169,415,608 - 169,593,508 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	171,592,703 - 171,769,780 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	171,592,797 - 171,769,780 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	178,591,031 - 178,768,239 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	164,722,168 - 164,928,937 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	164,817,644 - 165,024,414 (+)	NCBI
Celera	1	159,180,385 - 159,358,526 (+)	NCBI		Celera
Cytogenetic Map	1	q33	NCBI

Syt9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	23,061,163 - 23,221,962 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	23,061,163 - 23,221,986 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYT9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	9,654,086 - 9,870,593 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	9,619,499 - 9,833,193 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	7,350,612 - 7,565,272 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	7,032,803 - 7,247,187 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	7,032,803 - 7,247,187 (+)	Ensembl	panpan1.1		panPan2

SYT9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	30,985,059 - 31,123,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	30,986,521 - 31,162,414 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	30,500,261 - 30,692,179 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	31,795,334 - 31,987,496 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	31,737,706 - 32,027,664 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	31,067,861 - 31,259,788 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	31,230,498 - 31,422,621 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	31,526,042 - 31,718,284 (+)	NCBI		UU_Cfam_GSD_1.0

Syt9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	54,380,287 - 54,545,088 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936841	542,417 - 708,797 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936841	542,211 - 706,272 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYT9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	2,191,765 - 2,391,921 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	2,191,757 - 2,395,157 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	2,674,959 - 2,877,021 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Syt9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624817	8,996,893 - 9,166,331 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624817	8,996,880 - 9,171,226 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	20		20
Low	16	20	40
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008008133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008008144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008008152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008008160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008008170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037999773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005240677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000002422 ⟹ ENSCSAP00000000734

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	57,376,232 - 57,587,368 (-)	Ensembl

RefSeq Acc Id:

XM_008008133 ⟹ XP_008006324

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	57,375,933 - 57,587,350 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,221 (-)	NCBI

Sequence:

show sequence

AGAGGGACCCGGCGGGAGACAGAGAAAACCTGACCGACCGGCTGGCGAAGAGCTGCATGCAACC
GGTGGGAGGCCGGGCCGGCTGGGTCTGAGGCTCGGGATCGGGCTCGGACCGTTTCCCGGCGGGT
CCCTGGCGGTGAGCGCGGACGGCCCGGAAACGGCGGCTCTGAGCTGGCAGGCGGAGGGCTGTCT
CCTGCGCCCGCCTGCCCGGCGCGGTCCGAGGATGCGGGGGGGCGATGCCCGGGGCCAGGGACGC
GCTCTGTCACCAGGCGCTGCAGCTGCTGGCCGAGCTCTGTGCCCGTGGGGCCCTGGAGCACGAC
AGCTGCCAGGATTTCATCTACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCGACCCAGATA
TCTCAGTGAGCCTGCTGACCCTTGTGGTCACTGCCTGTGGTCTTGCTCTCTTTGGCGTGTCTCT
CTTCGTATCTTGGAAACTCTGCTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAA
GACAACAACCAGGAGCCTCTTAACTACACGGACACAGAGACCAATGAGCAGGAGAACAGTGAGG
ACTTCCTAGACCCTCCCACACCCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGA
CATTCCCCTCTCCGCCCAGACGGGAGTCCAGGAGAACTGTGCCCATGGCGTCCGCGTGCAGCGC
CAAGTCACAGAGCCAACCTCCTCGGCTCGGCATAATTCAATCCGAAGACAACTCAACTTGTCAA
ACCCGGACTTCAATATCCAGCAGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAA
ACCAGAGTTATATAAGCAGAGGTCATTGGATAATGATGACGGGAGACAGAGTAACAGCAAGGCT
TGTGGGAAACTGAACTTCATTTTAAAATATGACTGTGACTTAGAACAGCTCATAGTGAAGATTC
ACAAAGCTGTCAATTTGCCCGCCAAGGACTTTTCTGGGACTTCAGATCCTTATGTCAAGATCTA
TTTGCTTCCTGATCGGAAAACAAAACACCAGACTAAAGTTCACAGAAAGACCCTGAACCCTGTG
TTTGATGAAGTGTTTTTATTTCCGGTTCCCTACAATGACCTTGAAGCACGGAAGCTTCACTTCT
CTGTGTACGACTTTGACAGGTTCTCTCGTCATGACTTAATCGGCCAAGTGGTGGTGGATCACTT
CTTAGACTTGGCTGATTTCCCCATGGAGTGCATCCTTTGGAAGGATATCGAATATGTCACCAAT
GTCGACAACCAAGATAAAAGCATGTTTCCATATGTTTTCTCCCTGCAACTCTTCTCACACACTT
CTACACCTGACTTCACCAGAAATCTGAAAAAGGCAGAATGCTCTTTCCTGTTATCGGACTCCTG
GATCGGAGTTTCCCAGCTGGCACAAATGCCAGCTGCAGGACATAGGTGTGCCACTGATGACCTA
CAGGACAACGTGGATCTGGGAGAGCTGATGTTTTCCCTGTGCTATCTTCCAACGGCTGGCAGGC
TGACTATTACCATTATAAAAGCAAGGAATTTAAAGGCAATGGACATAACAGGAGCATCAGATCC
CTACGTGAAAGTCTCACTGATGTGTGATGGCAGACGACTGAAGAAGAGGAAAACATCCACCAAG
AGGAATACCTTGAATCCTGTTTACAACGAAGCCATAGTCTTTGATGTCCCTCCCGAGAACATTG
ACCAAATCCACTTGTCCATAGCAGTCATGGACTATGACCGTGTAGGTCACAATGAGATCATCGG
CGTGTGTCAAGTAGGCAACGAGGCTGAGAGGCTGGGCAGAGACCACTGGAGTGAAATGTTGTCA
TATCCTCGGAAGCCCATTGCACACTGGCATTCCCTGGTGGAGGGCTCCAAATCCCTGCTGCAGC
TCACCTCAAGGCGGAACAGGGTAGCAGCACACACCTCCTGCTCCAAGGACGACAGCATCCTCTA
AACGATGACCATGGGTAAGAGGACTGCTTGCGCCAAGGACACAATAGGACAACCATCTCACAAA
GATCTTAAGTAACTTTTTCCATCCAGCAACACCCAGACAATTTCAGTGACCAAACGCTCAGCTG
TAACCACAGCAATAACTGGCCTTCTTTCCAGACCGGGTTTGGTGAACCTGAATGGTTCAGCCAC
GTTCTGCAGGTGGCCCAAGGTGATGTGCTGCAGGGTAGCCTGTCTCTCATGCCAAGAACCAAGA
TTGGACTATGAATGAAAATAAATGATAGATATAGTGACAGTACCCAGAGTA

hide sequence

RefSeq Acc Id:

XM_008008152 ⟹ XP_008006343

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	57,375,933 - 57,587,339 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,218 (-)	NCBI

Sequence:

show sequence

GCGGGAGACAGAGAAAACCTGACCGACCGGCTGGCGAAGAGCTGCATGCAACCGGTGGGAGGCC
GGGCCGGCTGGGTCTGAGGCTCGGGATCGGGCTCGGACCGTTTCCCGGCGGGTCCCTGGCGGTG
AGCGCGGACGGCCCGGAAACGGCGGCTCTGAGCTGGCAGGCGGAGGGCTGTCTCCTGCGCCCGC
CTGCCCGGCGCGGTCCGAGGATGCGGGGGGGCGATGCCCGGGGCCAGGGACGCGCTCTGTCACC
AGGCGCTGCAGCTGCTGGCCGAGCTCTGTGCCCGTGGGGCCCTGGAGCACGACAGCTGCCAGGA
TTTCATCTACCACCTGCGGGACCGTGCCAGACCCCGGCTCCGCGACCCAGATATCTCAGTGAGC
CTGCTGACCCTTGTGGTCACTGCCTGTGGTCTTGCTCTCTTTGGCGTGTCTCTCTTCGTATCTT
GGAAACTCTGCTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAAGACAACAACCA
GGAGCCTCTTAACTACACGGACACAGAGACCAATGAGCAGGAGAACAGTGAGGACTTCCTAGAC
CCTCCCACACCCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGACATTCCCCTCT
CCGCCCAGACGGGAGTCCAGGAGAACTGTGCCCATGGCGTCCGCGTGCAGCGCCAAGTCACAGA
GCCAACCTCCTCGGCTCGGCATAATTCAATCCGAAGACAACTCAACTTGTCAAACCCGGACTTC
AATATCCAGCAGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAAACCAGAGTTAT
ATAAGCAGAGGTCATTGGATAATGATGACGGGAGACAGAGTAACAGCAAGGCTTGTGGGAAACT
GAACTTCATTTTAAAATATGACTGTGACTTAGAACAGCTCATAGTGAAGATTCACAAAGCTGTC
AATTTGCCCGCCAAGGACTTTTCTGGGACTTCAGATCCTTATGTCAAGATCTATTTGCTTCCTG
ATCGGAAAACAAAACACCAGACTAAAGTTCACAGAAAGACCCTGAACCCTGTGTTTGATGAAGT
GTTTTTATTTCCGGTTCCCTACAATGACCTTGAAGCACGGAAGCTTCACTTCTCTGTGTACGAC
TTTGACAGGTTCTCTCGTCATGACTTAATCGGCCAAGTGGTGGTGGATCACTTCTTAGACTTGG
CTGATTTCCCCATGGAGTGCATCCTTTGGAAGGATATCGAATATGTCACCAATGTCGACAACCA
AGATAAAAGCATGTTTCCATATGTTTTCTCCCTGCAACTCTTCTCACACACTTCTACACCTGAC
TTCACCAGAAATCTGAAAAAGGCAGAATGCTCTTTCCTGTTATCGGACTCCTGGATCGGAGTTT
CCCAGCTGGCACAAATGCCAGCTGCAGGACATAGGTGTGCCACTGATGACCTACAGGACAACGT
GGATCTGGGAGAGCTGATGTTTTCCCTGTGCTATCTTCCAACGGCTGGCAGGCTGACTATTACC
ATTATAAAAGCAAGGAATTTAAAGGCAATGGACATAACAGGAGCATCAGATCCCTACGTGAAAG
TCTCACTGATGTGTGATGGCAGACGACTGAAGAAGAGGAAAACATCCACCAAGAGGAATACCTT
GAATCCTGTTTACAACGAAGCCATAGTCTTTGATGTCCCTCCCGAGAACATTGACCAAATCCAC
TTGTCCATAGCAGTCATGGACTATGACCGTGTAGGTCACAATGAGATCATCGGCGTGTGTCAAG
TAGGCAACGAGGCTGAGAGGCTGGGCAGAGACCACTGGAGTGAAATGTTGTCATATCCTCGGAA
GCCCATTGCACACTGGCATTCCCTGGTGGAGAAACGATGACCATGGGTAAGAGGACTGCTTGCG
CCAAGGACACAATAGGACAACCATCTCACAAAGATCTTAAGTAACTTTTTCCATCCAGCAACAC
CCAGACAATTTCAGTGACCAAACGCTCAGCTGTAACCACAGCAATAACTGGCCTTCTTTCCAGA
CCGGGTTTGGTGAACCTGAATGGTTCAGCCACGTTCTGCAGGTGGCCCAAGGTGATGTGCTGCA
GGGTAGCCTGTCTCTCATGCCAAGAACCAAGATTGGACTATGAATGAAAATAAATGATAGATAT
AGTGACAGTACCCAGAGTA

hide sequence

RefSeq Acc Id:

XM_008008160 ⟹ XP_008006351

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	57,375,933 - 57,587,329 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,216 (-)	NCBI

Sequence:

show sequence

GAGAAAACCTGACCGACCGGCTGGCGAAGAGCTGCATGCAACCGGTGGGAGGCCGGGCCGGCTG
GGTCTGAGGCTCGGGATCGGGCTCGGACCGTTTCCCGGCGGGTCCCTGGCGGTGAGCGCGGACG
GCCCGGAAACGGCGGCTCTGAGCTGGCAGGCGGAGGGCTGTCTCCTGCGCCCGCCTGCCCGGCG
CGGTCCGAGGATGCGGGGGGGCGATGCCCGGGGCCAGGGACGCGCTCTGTCACCAGGCGCTGCA
GCTGCTGGCCGAGCTCTGTGCCCGTGGGGCCCTGGAGCACGACAGCTGCCAGGATTTCATCTAC
CACCTGCGGGACCGTGCCAGACCCCGGCTCCGCGACCCAGATATCTCAGTGAGCCTGCTGACCC
TTGTGGTCACTGCCTGTGGTCTTGCTCTCTTTGGCGTGTCTCTCTTCGTATCTTGGAAACTCTG
CTGGGTTCCGTGGCGAGAACGAGGCCTGCCCTCTGGTAGCAAAGACAACAACCAGGAGCCTCTT
AACTACACGGACACAGAGACCAATGAGCAGGAGAACAGTGAGGACTTCCTAGACCCTCCCACAC
CCTGCCCTGACTCCTCCATGAAGATCAGCCACACCTCCCCTGACATTCCCCTCTCCGCCCAGAC
GGGAGTCCAGGAGAACTGTGCCCATGGCGTCCGCGTGCAGCGCCAAGTCACAGAGCCAACCTCC
TCGGCTCGGCATAATTCAATCCGAAGACAACTCAACTTGTCAAACCCGGACTTCAATATCCAGC
AGCTTCAAAAACAGGAACAGTTGACTGGAATTGGTAGAATTAAACCAGAGTTATATAAGCAGAG
GTCATTGGATAATGATGACGGGAGACAGAGTAACAGCAAGGCTTGTGGGAAACTGAACTTCATT
TTAAAATATGACTGTGACTTAGAACAGCTCATAGTGAAGATTCACAAAGCTGTCAATTTGCCCG
CCAAGGACTTTTCTGGGACTTCAGATCCTTATGTCAAGATCTATTTGCTTCCTGATCGGAAAAC
AAAACACCAGACTAAAGTTCACAGAAAGACCCTGAACCCTGTGTTTGATGAAGTGTTTTTATTT
CCGGTTCCCTACAATGACCTTGAAGCACGGAAGCTTCACTTCTCTGTGTACGACTTTGACAGGT
TCTCTCGTCATGACTTAATCGGCCAAGTGGTGGTGGATCACTTCTTAGACTTGGCTGATTTCCC
CATGGAGTGCATCCTTTGGAAGGATATCGAATATGTCACCAATGACAACGTGGATCTGGGAGAG
CTGATGTTTTCCCTGTGCTATCTTCCAACGGCTGGCAGGCTGACTATTACCATTATAAAAGCAA
GGAATTTAAAGGCAATGGACATAACAGGAGCATCAGATCCCTACGTGAAAGTCTCACTGATGTG
TGATGGCAGACGACTGAAGAAGAGGAAAACATCCACCAAGAGGAATACCTTGAATCCTGTTTAC
AACGAAGCCATAGTCTTTGATGTCCCTCCCGAGAACATTGACCAAATCCACTTGTCCATAGCAG
TCATGGACTATGACCGTGTAGGTCACAATGAGATCATCGGCGTGTGTCAAGTAGGCAACGAGGC
TGAGAGGCTGGGCAGAGACCACTGGAGTGAAATGTTGTCATATCCTCGGAAGCCCATTGCACAC
TGGCATTCCCTGGTGGAGGGCTCCAAATCCCTGCTGCAGCTCACCTCAAGGCGGAACAGGGTAG
CAGCACACACCTCCTGCTCCAAGGACGACAGCATCCTCTAAACGATGACCATGGGTAAGAGGAC
TGCTTGCGCCAAGGACACAATAGGACAACCATCTCACAAAGATCTTAAGTAACTTTTTCCATCC
AGCAACACCCAGACAATTTCAGTGACCAAACGCTCAGCTGTAACCACAGCAATAACTGGCCTTC
TTTCCAGACCGGGTTTGGTGAACCTGAATGGTTCAGCCACGTTCTGCAGGTGGCCCAAGGTGAT
GTGCTGCAGGGTAGCCTGTCTCTCATGCCAAGAACCAAGATTGGACTATGAATGAAAATAAATG
ATAGATATAGTGACAGTACCCAGAGTA

hide sequence

RefSeq Acc Id:

XM_037999773 ⟹ XP_037855701

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	155,130,798 - 155,332,221 (-)	NCBI

RefSeq Acc Id:

XR_005240677

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666038	155,112,373 - 155,332,222 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008006324	(Get FASTA)	NCBI Sequence Viewer
	XP_008006343	(Get FASTA)	NCBI Sequence Viewer
	XP_008006351	(Get FASTA)	NCBI Sequence Viewer
	XP_037855701	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000000734.1

RefSeq Acc Id:	XP_008006324 ⟸ XM_008008133
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QWJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008006343 ⟸ XM_008008152
- Peptide Label:	isoform X3
- UniProtKB:	A0A0D9QWJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008006351 ⟸ XM_008008160
- Peptide Label:	isoform X4
- UniProtKB:	A0A0D9QWJ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000000734 ⟸ ENSCSAT00000002422

RefSeq Acc Id:	XP_037855701 ⟸ XM_037999773
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9QWJ5 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000004391	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000002422.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	Synaptotagmin	UniProtKB/TrEMBL
NCBI Gene	SYT9	ENTREZGENE
PANTHER	PTHR10024:SF180	UniProtKB/TrEMBL
	SYNAPTOTAGMIN	UniProtKB/TrEMBL
Pfam	PF00168	UniProtKB/TrEMBL
PRINTS	C2DOMAIN	UniProtKB/TrEMBL
	SYNAPTOTAGMN	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	A0A0D9QWJ5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations