DNAJC13 (DnaJ heat shock protein family (Hsp40) member C13) - Rat Genome Database

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Gene: DNAJC13 (DnaJ heat shock protein family (Hsp40) member C13) Chlorocebus sabaeus
Analyze
Symbol: DNAJC13
Name: DnaJ heat shock protein family (Hsp40) member C13
RGD ID: 18546537
Description: INVOLVED IN regulation of early endosome to recycling endosome transport (ortholog); PARTICIPATES IN altered retromer-mediated pathway; Parkinson's disease pathway; retromer-mediated pathway; ASSOCIATED WITH alkaptonuria (ortholog); essential tremor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11557,727,636 - 57,846,469 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1557,726,576 - 57,846,478 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604130,715,919 - 30,836,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNAJC13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11557,727,636 - 57,846,469 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1557,726,576 - 57,846,478 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604130,715,919 - 30,836,232 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DNAJC13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383132,417,502 - 132,539,032 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3132,417,502 - 132,539,032 (+)EnsemblGRCh38hg38GRCh38
GRCh373132,136,346 - 132,257,876 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363133,619,243 - 133,740,566 (+)NCBINCBI36Build 36hg18NCBI36
Celera3130,562,832 - 130,684,152 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3129,515,775 - 129,637,299 (+)NCBIHuRef
CHM1_13132,099,536 - 132,220,871 (+)NCBICHM1_1
T2T-CHM13v2.03135,161,977 - 135,283,543 (+)NCBIT2T-CHM13v2.0
Dnajc13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399104,028,796 - 104,140,807 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9104,028,481 - 104,140,129 (-)EnsemblGRCm39 Ensembl
GRCm389104,151,597 - 104,263,608 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9104,151,282 - 104,262,930 (-)EnsemblGRCm38mm10GRCm38
MGSCv379104,053,927 - 104,165,260 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369104,009,627 - 104,124,570 (-)NCBIMGSCv36mm8
Celera9103,704,588 - 103,815,197 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Dnajc13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88113,646,573 - 113,756,104 (-)NCBIGRCr8
mRatBN7.28104,767,785 - 104,877,317 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8104,767,788 - 104,877,317 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8110,414,878 - 110,524,417 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08108,614,065 - 108,723,604 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08106,456,768 - 106,566,306 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08112,697,907 - 112,830,445 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8112,698,348 - 112,807,598 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08112,084,097 - 112,193,820 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48109,211,093 - 109,304,212 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18109,230,855 - 109,340,202 (-)NCBI
Celera8104,132,362 - 104,265,570 (-)NCBICelera
Cytogenetic Map8q32NCBI
Dnajc13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555015,976,182 - 6,093,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555015,980,407 - 6,111,424 (-)NCBIChiLan1.0ChiLan1.0
DNAJC13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22130,370,262 - 130,489,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13130,374,990 - 130,494,225 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03129,492,658 - 129,612,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13136,970,007 - 137,088,775 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3136,970,007 - 137,088,775 (+)Ensemblpanpan1.1panPan2
DNAJC13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12329,389,120 - 29,506,339 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2329,389,979 - 29,506,343 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2329,363,599 - 29,480,811 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02329,902,287 - 30,019,700 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2329,902,343 - 30,019,691 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12329,595,604 - 29,713,015 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02329,654,643 - 29,772,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02329,903,248 - 30,021,073 (+)NCBIUU_Cfam_GSD_1.0
Dnajc13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560269,007,767 - 69,123,177 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365295,785,538 - 5,883,097 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365295,768,229 - 5,883,841 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1373,573,926 - 73,707,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11373,573,887 - 73,707,951 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21381,147,749 - 81,279,638 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Dnajc13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247308,517,998 - 8,648,318 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247308,497,781 - 8,649,058 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 8 53
Low 12 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000008639   ⟹   ENSCSAP00000006783
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1557,726,576 - 57,846,478 (-)Ensembl
RefSeq Acc Id: XM_008009116   ⟹   XP_008007307
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11557,727,636 - 57,846,468 (-)NCBI
Vero_WHO_p1.0NW_02366604130,715,919 - 30,836,232 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008009117   ⟹   XP_008007308
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11557,727,636 - 57,846,468 (-)NCBI
Vero_WHO_p1.0NW_02366604130,715,929 - 30,836,232 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005241914
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604130,716,658 - 30,836,125 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008007307 (Get FASTA)   NCBI Sequence Viewer  
  XP_008007308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006783.1
Reference Protein Sequences
RefSeq Acc Id: XP_008007308   ⟸   XM_008009117
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RDU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008007307   ⟸   XM_008009116
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RDU4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006783   ⟸   ENSCSAT00000008639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010558 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008639.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  GRV2/DNAJC13 UniProtKB/TrEMBL
  GRV2/DNAJC13_N UniProtKB/TrEMBL
  GYF-like_dom_sf UniProtKB/TrEMBL
  GYF_2 UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103241669 UniProtKB/TrEMBL
NCBI Gene DNAJC13 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 13 UniProtKB/TrEMBL
  PTHR36983 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  GYF_2 UniProtKB/TrEMBL
  RME-8_N UniProtKB/TrEMBL
PROSITE DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF55277 UniProtKB/TrEMBL
UniProt A0A0D9RDU4 ENTREZGENE, UniProtKB/TrEMBL