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Gene: CCDC38 (coiled-coil domain containing 38) Chlorocebus sabaeus

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Symbol:

CCDC38

Name:

coiled-coil domain containing 38

RGD ID:

18448309

Description:

ENCODES a protein that exhibits ubiquitin-modified histone reader activity (inferred); INVOLVED IN intraciliary anterograde transport (ortholog); sperm flagellum assembly (ortholog); spermatogenesis (ortholog); FOUND IN centrosome (inferred); cilium (inferred); cytoskeleton (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 38

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	91,252,125 - 91,319,449 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	91,252,852 - 91,301,116 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	153,810,034 - 153,887,754 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome assembly (IEA)

chromatin organization (IEA)

intraciliary anterograde transport (IEA,ISO)

sperm flagellum assembly (IEA,ISO)

spermatogenesis (IEA,ISO)

Cellular Component

centrosome (IEA)

cilium (IEA)

cytoskeleton (IEA)

manchette (IEA)

perinuclear region of cytoplasm (IEA)

sperm flagellum (IEA)

sperm head (IEA)

Molecular Function

protein binding (ISO)

ubiquitin-modified histone reader activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CCDC38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	91,252,125 - 91,319,449 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	91,252,852 - 91,301,116 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	153,810,034 - 153,887,754 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CCDC38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	95,867,048 - 95,943,233 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	95,867,048 - 95,942,635 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	96,260,826 - 96,336,392 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	94,784,958 - 94,860,559 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	95,929,959 - 96,005,323 (-)	NCBI		Celera
Cytogenetic Map	12	q23.1	NCBI
HuRef	12	93,325,373 - 93,400,863 (-)	NCBI		HuRef
CHM1_1	12	96,226,420 - 96,301,795 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	95,843,468 - 95,919,803 (-)	NCBI		T2T-CHM13v2.0

Ccdc38
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	93,376,451 - 93,420,189 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	93,376,494 - 93,420,189 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	93,540,589 - 93,584,327 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	93,540,632 - 93,584,327 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	93,003,377 - 93,047,071 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	92,970,431 - 93,014,125 (+)	NCBI		MGSCv36	mm8
Celera	10	95,527,164 - 95,571,152 (+)	NCBI		Celera
Cytogenetic Map	10	C2	NCBI
cM Map	10	48.55	NCBI

Ccdc38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	29,943,046 - 30,017,512 (+)	NCBI		GRCr8
mRatBN7.2	7	28,055,883 - 28,129,938 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	28,059,798 - 28,130,441 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	34,402,861 - 34,477,750 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	34,402,738 - 34,477,932 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	34,471,944 - 34,543,214 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	30,601,969 - 30,643,967 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	25,155,317 - 25,228,545 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

Ccdc38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	32,243,658 - 32,274,298 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	32,242,811 - 32,285,252 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	103,941,301 - 104,016,486 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	103,937,695 - 104,012,714 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	93,459,847 - 93,534,527 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	96,848,954 - 96,923,294 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	96,849,800 - 96,903,044 (-)	Ensembl	panpan1.1		panPan2

CCDC38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	35,698,722 - 35,744,820 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	35,699,803 - 35,733,993 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	36,085,380 - 36,131,778 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	36,363,755 - 36,410,233 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	36,364,836 - 36,410,038 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	35,636,474 - 35,682,897 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	35,730,830 - 35,777,452 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	35,994,411 - 36,040,843 (-)	NCBI		UU_Cfam_GSD_1.0

Ccdc38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	24,207,045 - 24,256,099 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936507	11,981,342 - 12,021,722 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936507	11,980,455 - 12,021,722 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	87,569,798 - 87,616,183 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	87,569,440 - 87,615,264 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	91,770,317 - 91,818,206 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ccdc38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	11,386,595 - 11,429,356 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	11,377,381 - 11,431,315 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008004303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008004304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_499336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000001620 ⟹ ENSCSAP00000014460

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	11	91,252,852 - 91,301,116 (-)	Ensembl

RefSeq Acc Id:

XM_008004303 ⟹ XP_008002494

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	91,252,439 - 91,319,449 (-)	NCBI
Vero_WHO_p1.0	NW_023666037	153,810,034 - 153,887,754 (+)	NCBI

Sequence:

show sequence

GGCTGTGGCCGCCTGCCATGTCCCCGTGCGCCGAGGGTCTCCAGGAGGCCACCGGGCTCCGGCC
ACTGGCAGGACTCAGTGGAGGACGAAAAACCGCAGCCTGCGCCGCCCGGGGCCGGGAGGGTGGG
GCGGGGGCGGGCGCTCGCAGCCGCTGCCCTTTGCTCGCCTCCCTCAACCACAGCAACCGGGGCG
GGCCAGGCAACAAAATGTCCTCAAATTTATCGCCAACACTGAATTCTGGAGATAAAGTAAAGGA
TGGCTCAATCAAAGAGGACAGGCCTTATAAGATCTTTTTCAGAGATCTCTTTCTTTTCAAAGAA
AATGAAATGGAAGCAAAGAAAACGGAAAAACTTATGAACCATAACATGAAAGTCTACCAGAAAA
CTACTTTTTCATCCAGAATGAAGAGTCGTTCATACCTGAGCCAACTAGCTTTCTACCCTAAAAG
GGGTGGTAGGTCATTTGAAAAGTTTGGGCCAGGTCCTGCTCCAATTTCTAGATTTCTAGAAGGT
TCAGACACAAAAAGGACTGTCCATGAATTTATTAATGACCAGAGAGACAGGTTTCTGCTTGAGT
ATGCTTTGTCAACCAAAAGAAACACAATCAAAAAGTTTGAAAAAGACATAGCAATGAGGGAACG
GCAACTCAAAAAAGCAGAGAAAAAGCTCCAAGATGATGCACTGGCCTTTGAAGAGTTCCTTCGA
GAAAACGACCAGAGATCTGTAGACGCTCTTAAATTGGCAGCACAGGAAACGATAAACAAACTCC
AAATGACAACAGAGCTGAAGAAAGCAAGCATGGAGGTACAAGCAGTGAAAAGTGAAATAGCAAA
AACAGAATTCCTCCTCAAGGAGTACATGAAATATGGTTTTTTTCTGCTGCAATTGTCTCCAAAA
CATTGGCAAATCCAGCAAGCACTAAAAAGAGCACAGGCATCAAAAAGTAAAGCAAATATCATCC
TTCCAAAAATATTAGCAAAATTATCATTACATTCGAGTAAAAAGGAAGGCATTCTTGAGGAGTT
TGGGGGGACAGCCATCCTTTCAGAAGATGCTTCTCAGGGAAGAGACAGCCAAGGAAAGCCAAGC
AGAATCCTGACTCGCACCTCAGAGAAAATCAAATCAAACCTGACTGAAAGTTTCGGTTCAGAAG
ACAGTTTGGAATTCCTTTTAGATGATGAAATGGACTTTGATTTGGAGCCAGCGCTTTATTTCAA
GGAACCAGAGGAGTTACTTCAAGTCCTCAGAGAGCTGGAAGAGCAGAATCTTACTTTGTTTCAA
TATTCCCAAGATGTAGATGAAAATCTTGAAGAGGTAAACAAAAGAGAAAAAGTTATACAGGATA
AAACAAATAGCAACATAGAGTTTCTTTTGGAGCAAGAAGAAATGCTTAAAGCTAATTGTGTGAG
AGAAGAGGAGAAAGCAGCAGAATTGCAATTAAGGTCCAGGCTCTTTAGCTTTGGAGAATTTAAT
TCAGATGCTCAGGAAATACTGATAGACTCACTTAGTAAAAAGATTACTGAAGTATACAAAGTCT
GCATTGGAGATGCTGAGGATGACGGCCTCAACCCAATTCAAAAGCTGGTAAAAGTAGAGTCTCG
CCTGGTAGAACTGTGTGACCTCATCGAATCCATTCCCAGAGAAAATGTGGAGGCAATTGAGAGG
ATGAAACAGAAAGAACGGCGGCAAAAGTTTCGTGATGAGAAAATGAGAGAAAAACAAAGACACC
AAGAGGAAAGGCTAAAAGCTGCTCTGGAAAAAGCAGTAGCACAACCAAAGAAAAAGTTGGGAAG
ACGACTTGTCTATCATTCAAAACCTCCATCTGCTAACAAACAGCAGCTACCTTTAGTCAATGAA
ACAAAAACAAAAGCACAAGAAGAAGAATATTTTTTTACTTGAATAAAAGCAGTAAGACATTTTA
TTACCAGAATGTCTTAGGTATGTTTTGTAAATCTTGGCTTTCACTAATGGCAATATTCTGCCCC
ATGTACCAGGCCTAATCAATTTGAGGAAGACAGGCCCTTATTCTAAGGGCCATAGGATTAGGAA
TAAGTTATTTTCTTTTGTTGAAGTCTTTATTCATATCATAAGTATTAGTCCATATAGTTCAACA
TTGTTATCTATACTTTGAGTTGTTCCACTTGGGGATACACAAAGATAGTTTACTGATAAAATTG
TATGGTAAATGACCACTGAAGTGTAATAATGGCCATTCTCTTACAACATGAGAATGTAAATGAT
ATATTTTCTCAACGCATCTGTAGGGAAGTTCATAGCACGCTGTTATTACTATGGAATATACATT
TTAACAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008002494	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000014460
	ENSCSAP00000014460.1

RefSeq Acc Id:	XP_008002494 ⟸ XM_008004303
- UniProtKB:	A0A0D9S0S1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000014460 ⟸ ENSCSAT00000001620

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000003598	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000001620.1	UniProtKB/TrEMBL
InterPro	CFAP_domain-containing	UniProtKB/TrEMBL
	DUF4200	UniProtKB/TrEMBL
NCBI Gene	CCDC38	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 38	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DUF4200	UniProtKB/TrEMBL
UniProt	A0A0D9S0S1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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