GRIK5 (glutamate ionotropic receptor kainate type subunit 5) - Rat Genome Database

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Gene: GRIK5 (glutamate ionotropic receptor kainate type subunit 5) Chlorocebus sabaeus
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Symbol: GRIK5
Name: glutamate ionotropic receptor kainate type subunit 5
RGD ID: 18356404
Description: ENCODES a protein that exhibits glutamate receptor activity (ortholog); glutamate-gated receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); chemical synaptic transmission (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); chronic obstructive pulmonary disease (ortholog); congenital hypoplastic anemia (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glutamate receptor ionotropic, kainate 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,199,358 - 36,273,355 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,199,349 - 36,269,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,441,791 - 14,521,580 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GRIK5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,199,358 - 36,273,355 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,199,349 - 36,269,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,441,791 - 14,521,580 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GRIK5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,998,324 - 42,070,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,998,321 - 42,070,206 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,502,476 - 42,574,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,194,313 - 47,261,797 (-)NCBINCBI36Build 36hg18NCBI36
Build 341947,194,312 - 47,261,797NCBI
Celera1939,302,092 - 39,369,575 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,934,282 - 39,001,175 (-)NCBIHuRef
CHM1_11942,504,085 - 42,571,606 (-)NCBICHM1_1
T2T-CHM13v2.01944,817,686 - 44,889,570 (-)NCBIT2T-CHM13v2.0
Grik5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,709,274 - 24,775,421 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,709,274 - 24,771,771 (-)EnsemblGRCm39 Ensembl
GRCm38725,009,849 - 25,075,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,009,849 - 25,072,346 (-)EnsemblGRCm38mm10GRCm38
MGSCv37725,794,868 - 25,857,388 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,718,636 - 24,781,058 (-)NCBIMGSCv36mm8
Celera719,625,658 - 19,688,340 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.73NCBI
Grik5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,733,736 - 89,795,769 (-)NCBIGRCr8
mRatBN7.2180,605,878 - 80,667,896 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,605,892 - 80,667,125 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,998,459 - 86,059,573 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,549,318 - 94,610,432 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,754,221 - 87,815,339 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,885,516 - 81,946,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,885,521 - 81,946,714 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,137,805 - 83,207,039 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,313,801 - 80,384,390 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,391,911 - 80,462,398 (-)NCBI
Celera175,051,832 - 75,112,171 (-)NCBICelera
Cytogenetic Map1q21NCBI
Grik5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555812,928 - 864,874 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555804,907 - 865,395 (+)NCBIChiLan1.0ChiLan1.0
GRIK5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,103,370 - 48,174,201 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,971,984 - 50,042,814 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,886,108 - 38,956,938 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,389,253 - 47,549,018 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,389,804 - 47,544,604 (-)Ensemblpanpan1.1panPan2
GRIK5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,270,157 - 112,321,672 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,270,424 - 112,321,672 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,702,486 - 111,753,731 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,887,140 - 112,941,269 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,889,737 - 112,941,269 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,443,154 - 112,494,596 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,079,617 - 112,130,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,005,888 - 113,057,155 (+)NCBIUU_Cfam_GSD_1.0
Grik5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,062,693 - 16,121,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706410,938 - 464,714 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706410,806 - 469,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIK5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,845,656 - 49,902,080 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,840,671 - 49,901,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,891,687 - 45,922,679 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Grik5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907653,895 - 710,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907653,568 - 711,358 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000001509   ⟹   ENSCSAP00000014567
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl636,199,349 - 36,269,591 (-)Ensembl
RefSeq Acc Id: XM_007996951   ⟹   XP_007995142
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1636,199,358 - 36,273,355 (-)NCBI
Vero_WHO_p1.0NW_02366607314,441,791 - 14,515,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037991313   ⟹   XP_037847241
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607314,441,791 - 14,521,580 (-)NCBI
RefSeq Acc Id: XM_037991314   ⟹   XP_037847242
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607314,441,791 - 14,516,010 (-)NCBI
RefSeq Acc Id: XM_037991315   ⟹   XP_037847243
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607314,441,791 - 14,511,630 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007995142 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847241 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847242 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847243 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014567
  ENSCSAP00000014567.1
RefSeq Acc Id: XP_007995142   ⟸   XM_007996951
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S128 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000014567   ⟸   ENSCSAT00000001509
RefSeq Acc Id: XP_037847241   ⟸   XM_037991313
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037847242   ⟸   XM_037991314
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037847243   ⟸   XM_037991315
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000003483 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000001509.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Periplasmic binding protein-like II UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/TrEMBL
  Ionotropic_Glu_rcpt UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene GRIK5 ENTREZGENE
PANTHER GLUTAMATE RECEPTOR IONOTROPIC, KAINATE 5 UniProtKB/TrEMBL
  IONOTROPIC GLUTAMATE RECEPTOR UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Lig_chan UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/TrEMBL
PRINTS NMDARECEPTOR UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/TrEMBL
  PBPe UniProtKB/TrEMBL
Superfamily-SCOP Periplasmic binding protein-like II UniProtKB/TrEMBL
  SSF53822 UniProtKB/TrEMBL
UniProt A0A0D9S128 ENTREZGENE, UniProtKB/TrEMBL