FNBP1L (formin binding protein 1 like) - Rat Genome Database

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Gene: FNBP1L (formin binding protein 1 like) Chlorocebus sabaeus
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Symbol: FNBP1L
Name: formin binding protein 1 like
RGD ID: 18646030
Description: ENCODES a protein that exhibits GTPase binding (inferred); lipid binding (inferred); INVOLVED IN cilium assembly (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cell cortex (inferred); cytoplasm (inferred); cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: formin-binding protein 1-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12039,686,836 - 39,788,948 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2039,686,742 - 39,788,893 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603378,243,490 - 78,351,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
FNBP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12039,686,836 - 39,788,948 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2039,686,742 - 39,788,893 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603378,243,490 - 78,351,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FNBP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,448,118 - 93,554,661 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,448,118 - 93,554,661 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,913,675 - 94,020,218 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,737,613 - 93,792,806 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,625,859 - 93,728,685NCBI
Celera192,167,769 - 92,274,276 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef192,035,040 - 92,141,691 (+)NCBIHuRef
CHM1_1194,028,634 - 94,135,158 (+)NCBICHM1_1
T2T-CHM13v2.0193,293,865 - 93,400,393 (+)NCBIT2T-CHM13v2.0
Fnbp1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393122,332,368 - 122,413,363 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3122,332,368 - 122,413,364 (-)EnsemblGRCm39 Ensembl
GRCm383122,538,719 - 122,619,714 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3122,538,719 - 122,619,715 (-)EnsemblGRCm38mm10GRCm38
MGSCv373122,241,637 - 122,322,585 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363122,530,746 - 122,560,788 (-)NCBIMGSCv36mm8
Celera3128,939,499 - 128,990,860 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map353.63NCBI
Fnbp1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82213,331,871 - 213,432,821 (-)NCBIGRCr8
mRatBN7.22210,647,241 - 210,748,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2210,647,246 - 210,738,455 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2218,320,429 - 218,413,035 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02216,228,208 - 216,320,811 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02211,073,970 - 211,165,493 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02226,691,435 - 226,742,081 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2226,688,844 - 226,779,440 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,053,113 - 246,103,759 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,200,341 - 219,250,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,159,974 - 219,268,059 (-)NCBI
Celera2203,079,714 - 203,130,721 (-)NCBICelera
Cytogenetic Map2q42NCBI
Fnbp1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554231,119,471 - 1,220,835 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554231,115,828 - 1,220,316 (-)NCBIChiLan1.0ChiLan1.0
FNBP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,462,491 - 133,568,709 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11132,617,655 - 132,723,862 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0196,117,160 - 96,223,362 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,848,050 - 94,953,820 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,848,050 - 94,953,820 (+)Ensemblpanpan1.1panPan2
FNBP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1655,533,270 - 55,642,622 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl655,534,751 - 55,642,463 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha658,240,226 - 58,349,639 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0655,908,010 - 56,017,550 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl655,908,010 - 56,017,494 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1655,587,653 - 55,696,933 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0655,572,437 - 55,681,840 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0656,025,548 - 56,135,271 (-)NCBIUU_Cfam_GSD_1.0
Fnbp1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058103,158,535 - 103,276,451 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365375,671,331 - 5,790,054 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365375,671,517 - 5,789,480 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNBP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4123,675,065 - 123,779,630 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14123,675,062 - 123,779,645 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24135,331,073 - 135,435,677 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Fnbp1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247424,076,926 - 4,157,578 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247424,061,342 - 4,211,201 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 49
Low 19 11
Below cutoff 1

Sequence


RefSeq Acc Id: ENSCSAT00000017055   ⟹   ENSCSAP00000016547
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2039,686,742 - 39,788,893 (-)Ensembl
RefSeq Acc Id: XM_007977919   ⟹   XP_007976110
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12039,686,836 - 39,788,947 (-)NCBI
Vero_WHO_p1.0NW_02366603378,243,490 - 78,351,474 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977920   ⟹   XP_007976111
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12039,686,836 - 39,788,948 (-)NCBI
Vero_WHO_p1.0NW_02366603378,243,537 - 78,351,468 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977922   ⟹   XP_007976113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12039,686,836 - 39,788,945 (-)NCBI
Vero_WHO_p1.0NW_02366603378,243,537 - 78,351,468 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977923   ⟹   XP_007976114
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12039,686,836 - 39,788,945 (-)NCBI
Vero_WHO_p1.0NW_02366603378,243,537 - 78,351,474 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007976110 (Get FASTA)   NCBI Sequence Viewer  
  XP_007976111 (Get FASTA)   NCBI Sequence Viewer  
  XP_007976113 (Get FASTA)   NCBI Sequence Viewer  
  XP_007976114 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016547
  ENSCSAP00000016547.1
RefSeq Acc Id: XP_007976111   ⟸   XM_007977920
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007976110   ⟸   XM_007977919
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007976114   ⟸   XM_007977923
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S6Q8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007976113   ⟸   XM_007977922
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000016547   ⟸   ENSCSAT00000017055


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017055.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  6.10.140.470 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  F_BAR UniProtKB/TrEMBL
  FCH_dom UniProtKB/TrEMBL
  FNBP1L_F-BAR UniProtKB/TrEMBL
  FNBP1L_SH3 UniProtKB/TrEMBL
  HR1_rho-bd UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene FNBP1L ENTREZGENE
PANTHER FCH AND DOUBLE SH3 DOMAINS PROTEIN UniProtKB/TrEMBL
  PTHR15735:SF14 UniProtKB/TrEMBL
Pfam FCH UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/TrEMBL
  REM_1 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART FCH UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A0D9S6Q8 ENTREZGENE, UniProtKB/TrEMBL