SNAP23 (synaptosome associated protein 23) - Rat Genome Database

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Gene: SNAP23 (synaptosome associated protein 23) Chlorocebus sabaeus
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Symbol: SNAP23
Name: synaptosome associated protein 23
RGD ID: 18631828
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); exocytosis (ortholog); membrane fusion (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptosomal-associated protein 23
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,443,478 - 40,485,211 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,442,615 - 40,482,346 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,526,825 - 100,568,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SNAP23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,443,478 - 40,485,211 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,442,615 - 40,482,346 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048100,526,825 - 100,568,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SNAP23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,491,129 - 42,533,058 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,491,233 - 42,545,356 (+)EnsemblGRCh38hg38GRCh38
GRCh371542,787,832 - 42,825,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,575,127 - 40,612,548 (+)NCBINCBI36Build 36hg18NCBI36
Celera1519,555,540 - 19,592,958 (+)NCBICelera
Cytogenetic Map15q15.1-q15.2NCBI
HuRef1519,635,345 - 19,673,071 (+)NCBIHuRef
CHM1_11542,905,940 - 42,943,698 (+)NCBICHM1_1
T2T-CHM13v2.01540,297,171 - 40,339,102 (+)NCBIT2T-CHM13v2.0
Snap23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,398,137 - 120,436,829 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,398,152 - 120,431,736 (+)EnsemblGRCm39 Ensembl
GRCm382120,567,655 - 120,601,255 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,567,671 - 120,601,255 (+)EnsemblGRCm38mm10GRCm38
MGSCv372120,393,407 - 120,426,458 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362120,259,112 - 120,292,163 (+)NCBIMGSCv36mm8
Celera2121,720,414 - 121,753,492 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Snap23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,966,184 - 127,999,929 (+)NCBIGRCr8
mRatBN7.23107,514,088 - 107,546,177 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,514,131 - 107,544,320 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3111,188,811 - 111,219,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03119,784,379 - 119,814,692 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03117,444,773 - 117,475,086 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03112,333,972 - 112,362,960 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03118,880,898 - 118,909,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43107,361,066 - 107,362,878 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3106,422,362 - 106,451,900 (+)NCBICelera
Cytogenetic Map3q35NCBI
Snap23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,190,623 - 9,225,103 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554169,191,123 - 9,225,103 (+)NCBIChiLan1.0ChiLan1.0
SNAP23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,741,494 - 31,783,820 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,898,461 - 35,940,783 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,456,247 - 21,494,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,608,479 - 39,650,759 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,612,445 - 39,650,759 (+)Ensemblpanpan1.1panPan2
SNAP23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,453,931 - 9,493,506 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,456,084 - 9,492,329 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha309,511,812 - 9,550,895 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0309,589,363 - 9,628,453 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl309,591,559 - 9,629,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1309,508,701 - 9,547,616 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,615,029 - 9,654,170 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,747,912 - 9,786,884 (+)NCBIUU_Cfam_GSD_1.0
Snap23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,932,868 - 87,970,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,784,054 - 5,820,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,784,070 - 5,818,644 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1128,847,931 - 128,888,947 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11128,849,465 - 128,888,972 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,742,362 - 143,781,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Snap23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248049,610,308 - 9,641,933 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248049,609,777 - 9,643,670 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006877   ⟹   ENSCSAP00000005069
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2640,442,615 - 40,482,346 (-)Ensembl
RefSeq Acc Id: XM_008016895   ⟹   XP_008015086
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12640,443,478 - 40,482,716 (-)NCBI
Vero_WHO_p1.0NW_023666048100,529,334 - 100,568,648 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008016896   ⟹   XP_008015087
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12640,444,725 - 40,485,211 (-)NCBI
Vero_WHO_p1.0NW_023666048100,526,825 - 100,568,648 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038009881   ⟹   XP_037865809
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048100,529,813 - 100,568,648 (+)NCBI
Protein Sequences
Protein RefSeqs XP_008015086 (Get FASTA)   NCBI Sequence Viewer  
  XP_008015087 (Get FASTA)   NCBI Sequence Viewer  
  XP_037865809 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005069
  ENSCSAP00000005069.1
RefSeq Acc Id: XP_008015086   ⟸   XM_008016895
- UniProtKB: A0A0D9R8Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008015087   ⟸   XM_008016896
- UniProtKB: A0A0D9R8Y0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000005069   ⟸   ENSCSAT00000006877
RefSeq Acc Id: XP_037865809   ⟸   XM_038009881
- UniProtKB: A0A0D9R8Y0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008814 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006877.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro SNAP-25_dom UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report csab:103245766 UniProtKB/TrEMBL
NCBI Gene SNAP23 ENTREZGENE
PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN UniProtKB/TrEMBL
  SYNAPTOSOMAL-ASSOCIATED PROTEIN 23 UniProtKB/TrEMBL
Pfam SNAP-25 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A0D9R8Y0 ENTREZGENE, UniProtKB/TrEMBL