SEC31B (SEC31 homolog B, COPII coat complex component) - Rat Genome Database

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Gene: SEC31B (SEC31 homolog B, COPII coat complex component) Chlorocebus sabaeus
Analyze
Symbol: SEC31B
Name: SEC31 homolog B, COPII coat complex component
RGD ID: 18489405
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN COPII-coated vesicle cargo loading (inferred); endoplasmic reticulum organization (inferred); endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN COPII vesicle coat (inferred); endoplasmic reticulum (inferred); endoplasmic reticulum exit site (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein transport protein Sec31B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,505,655 - 93,537,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,506,626 - 93,537,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604854,546,134 - 54,589,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEC31B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,505,655 - 93,537,525 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl993,506,626 - 93,537,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604854,546,134 - 54,589,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SEC31B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,486,647 - 100,519,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,486,646 - 100,519,864 (-)EnsemblGRCh38hg38GRCh38
GRCh3710102,246,404 - 102,279,618 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,236,393 - 102,269,585 (-)NCBINCBI36Build 36hg18NCBI36
Celera1095,984,251 - 96,017,442 (-)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1095,875,263 - 95,908,412 (-)NCBIHuRef
CHM1_110102,531,040 - 102,564,247 (-)NCBICHM1_1
T2T-CHM13v2.010101,369,754 - 101,402,965 (-)NCBIT2T-CHM13v2.0
Sec31b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,505,396 - 44,534,287 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,505,396 - 44,534,303 (-)EnsemblGRCm39 Ensembl
GRCm381944,516,957 - 44,545,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,516,957 - 44,545,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv371944,591,447 - 44,620,338 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,570,268 - 44,599,159 (-)NCBIMGSCv36mm8
Celera1945,284,673 - 45,313,471 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1937.98NCBI
Sec31b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81253,324,081 - 253,353,779 (-)NCBIGRCr8
mRatBN7.21243,376,283 - 243,404,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,378,456 - 243,404,557 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1251,524,347 - 251,549,778 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01258,225,458 - 258,250,968 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,874,538 - 250,899,977 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01264,266,279 - 264,294,687 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1264,268,338 - 264,294,630 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01271,709,442 - 271,737,734 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,567,756 - 249,593,300 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1239,193,219 - 239,218,674 (-)NCBICelera
Cytogenetic Map1q54NCBI
Sec31b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554859,615,879 - 9,655,826 (+)NCBIChiLan1.0ChiLan1.0
SEC31B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,370,529 - 112,406,135 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,375,843 - 112,408,915 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01097,086,792 - 97,120,604 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,567,924 - 100,600,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,568,891 - 100,598,141 (-)Ensemblpanpan1.1panPan2
SEC31B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,210,213 - 13,246,170 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,200,000 - 13,243,682 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,357,182 - 13,417,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,655,397 - 13,715,439 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,658,388 - 13,717,164 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,201,826 - 13,261,919 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,240,326 - 13,303,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,402,557 - 13,434,535 (-)NCBIUU_Cfam_GSD_1.0
Sec31b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,525,170 - 33,559,191 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366005,129,947 - 5,162,427 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366005,129,047 - 5,162,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC31B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,588,091 - 111,624,073 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114111,585,917 - 111,626,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2463,919,155 - 63,955,465 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 12 12
Low 24 17 48
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007963841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007963848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038009460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000003607   ⟹   ENSCSAP00000001884
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl993,506,626 - 93,537,155 (-)Ensembl
RefSeq Acc Id: XM_007963846   ⟹   XP_007962037
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1993,505,745 - 93,537,525 (-)NCBI
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007963847   ⟹   XP_007962038
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1993,505,745 - 93,537,525 (-)NCBI
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007963848   ⟹   XP_007962039
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1993,505,737 - 93,537,525 (-)NCBI
Vero_WHO_p1.0NW_02366604854,546,173 - 54,589,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038009453   ⟹   XP_037865381
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,134 - 54,584,782 (-)NCBI
RefSeq Acc Id: XM_038009454   ⟹   XP_037865382
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
RefSeq Acc Id: XM_038009455   ⟹   XP_037865383
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
RefSeq Acc Id: XM_038009456   ⟹   XP_037865384
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
RefSeq Acc Id: XM_038009457   ⟹   XP_037865385
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
RefSeq Acc Id: XM_038009458   ⟹   XP_037865386
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,589,271 (-)NCBI
RefSeq Acc Id: XM_038009459   ⟹   XP_037865387
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,569,640 (-)NCBI
RefSeq Acc Id: XM_038009460   ⟹   XP_037865388
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604854,546,204 - 54,569,641 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007962039   ⟸   XM_007963848
- Peptide Label: isoform X5
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962038   ⟸   XM_007963847
- Peptide Label: isoform X5
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007962037   ⟸   XM_007963846
- Peptide Label: isoform X3
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001884   ⟸   ENSCSAT00000003607
RefSeq Acc Id: XP_037865381   ⟸   XM_038009453
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865385   ⟸   XM_038009457
- Peptide Label: isoform X4
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865383   ⟸   XM_038009455
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865386   ⟸   XM_038009458
- Peptide Label: isoform X6
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865384   ⟸   XM_038009456
- Peptide Label: isoform X4
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865382   ⟸   XM_038009454
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865388   ⟸   XM_038009460
- Peptide Label: isoform X7
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865387   ⟸   XM_038009459
- Peptide Label: isoform X6
- UniProtKB: A0A0D9QZU5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005583 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003607.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.1030 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  Functional domain of the splicing factor Prp18 UniProtKB/TrEMBL
InterPro SEC31-like UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene SEC31B ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC31B UniProtKB/TrEMBL
  PTHR13923 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0D9QZU5 ENTREZGENE, UniProtKB/TrEMBL