ERC1 (ELKS/RAB6-interacting/CAST family member 1) - Rat Genome Database

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Gene: ERC1 (ELKS/RAB6-interacting/CAST family member 1) Chlorocebus sabaeus
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Symbol: ERC1
Name: ELKS/RAB6-interacting/CAST family member 1
RGD ID: 18453596
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); small GTPase binding (ortholog); INVOLVED IN I-kappaB phosphorylation (ortholog); positive regulation of NF-kappaB transcription factor activity (ortholog); regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); Macrocephaly, Dysmorphic Facies, and Psychomotor Retardation (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); podosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111989,376 - 1,530,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,030,294 - 1,524,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ERC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111989,376 - 1,530,470 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,030,294 - 1,524,817 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ERC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812989,959 - 1,495,933 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12990,509 - 1,495,933 (+)EnsemblGRCh38hg38GRCh38
GRCh37121,100,389 - 1,605,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612970,665 - 1,472,958 (+)NCBINCBI36Build 36hg18NCBI36
Celera122,707,077 - 3,211,656 (+)NCBICelera
Cytogenetic Map12p13.33NCBI
HuRef12952,225 - 1,457,980 (+)NCBIHuRef
CHM1_1121,099,408 - 1,604,090 (+)NCBICHM1_1
T2T-CHM13v2.012985,850 - 1,490,194 (+)NCBIT2T-CHM13v2.0
Erc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396119,547,757 - 119,830,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6119,547,757 - 119,825,128 (-)EnsemblGRCm39 Ensembl
GRCm386119,570,796 - 119,848,184 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6119,570,796 - 119,848,167 (-)EnsemblGRCm38mm10GRCm38
MGSCv376119,520,814 - 119,798,168 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366119,540,864 - 119,813,753 (-)NCBIMGSCv36mm8
Celera6121,405,104 - 121,685,429 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map656.86NCBI
Erc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84154,435,936 - 154,727,987 (-)NCBIGRCr8
mRatBN7.24152,763,664 - 153,055,724 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4152,767,419 - 153,055,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4159,025,966 - 159,332,211 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04154,809,683 - 155,115,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04153,433,030 - 153,739,286 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04152,087,393 - 152,380,023 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4152,087,379 - 152,380,184 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04219,174,705 - 219,465,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44155,931,377 - 156,221,104 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14156,234,169 - 156,465,945 (-)NCBI
Celera4141,623,820 - 141,910,539 (-)NCBICelera
Cytogenetic Map4q42NCBI
Erc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554543,586,667 - 4,031,130 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554543,584,910 - 4,036,276 (+)NCBIChiLan1.0ChiLan1.0
ERC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2106,489,987 - 7,025,406 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,486,819 - 7,022,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0121,066,034 - 1,597,562 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1121,027,967 - 1,550,182 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl121,027,967 - 1,545,431 (+)Ensemblpanpan1.1panPan2
ERC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12743,004,243 - 43,544,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2743,038,544 - 43,678,843 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha273,140,420 - 3,679,170 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02743,365,560 - 43,911,683 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2743,365,538 - 43,911,649 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12743,303,937 - 43,842,830 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02743,275,814 - 43,815,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,498,548 - 3,038,339 (-)NCBIUU_Cfam_GSD_1.0
Erc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945107,470,207 - 107,982,754 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366061,201,657 - 1,708,551 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366061,201,420 - 1,713,894 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl568,223,729 - 68,608,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1568,223,722 - 68,608,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2570,490,274 - 70,873,482 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Erc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473511,400,159 - 11,841,920 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473511,398,603 - 11,907,553 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ERC1
16182 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007967133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_007967143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037988643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_491527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_491528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_491529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_491530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_491531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000009738   ⟹   ENSCSAP00000007849
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl111,030,294 - 1,524,817 (+)Ensembl
RefSeq Acc Id: XM_007967133   ⟹   XP_007965324
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111990,044 - 1,526,487 (+)NCBI
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007967138   ⟹   XP_007965329
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111990,045 - 1,526,487 (+)NCBI
Vero_WHO_p1.0NW_0236660636,816,412 - 7,356,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007967139   ⟹   XP_007965330
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111990,045 - 1,526,487 (+)NCBI
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007967140   ⟹   XP_007965331
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111990,045 - 1,526,487 (+)NCBI
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007967143   ⟹   XP_007965334
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.111990,045 - 1,473,700 (+)NCBI
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037988632   ⟹   XP_037844560
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,044 (-)NCBI
RefSeq Acc Id: XM_037988633   ⟹   XP_037844561
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,343,491 (-)NCBI
RefSeq Acc Id: XM_037988634   ⟹   XP_037844562
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,328,845 (-)NCBI
RefSeq Acc Id: XM_037988635   ⟹   XP_037844563
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,325,333 (-)NCBI
RefSeq Acc Id: XM_037988636   ⟹   XP_037844564
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,786 (-)NCBI
RefSeq Acc Id: XM_037988637   ⟹   XP_037844565
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,044 (-)NCBI
RefSeq Acc Id: XM_037988638   ⟹   XP_037844566
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,812,077 - 7,356,045 (-)NCBI
RefSeq Acc Id: XM_037988639   ⟹   XP_037844567
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,044 (-)NCBI
RefSeq Acc Id: XM_037988640   ⟹   XP_037844568
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,043 (-)NCBI
RefSeq Acc Id: XM_037988641   ⟹   XP_037844569
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,043 (-)NCBI
RefSeq Acc Id: XM_037988642   ⟹   XP_037844570
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,045 (-)NCBI
RefSeq Acc Id: XM_037988643   ⟹   XP_037844571
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660636,869,522 - 7,356,043 (-)NCBI
RefSeq Acc Id: XP_007965324   ⟸   XM_007967133
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RGW0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007965329   ⟸   XM_007967138
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007965330   ⟸   XM_007967139
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007965331   ⟸   XM_007967140
- Peptide Label: isoform X6
RefSeq Acc Id: XP_007965334   ⟸   XM_007967143
- Peptide Label: isoform X12
Ensembl Acc Id: ENSCSAP00000007849   ⟸   ENSCSAT00000009738
RefSeq Acc Id: XP_037844564   ⟸   XM_037988636
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844566   ⟸   XM_037988638
- Peptide Label: isoform X7
RefSeq Acc Id: XP_037844565   ⟸   XM_037988637
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037844560   ⟸   XM_037988632
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844561   ⟸   XM_037988633
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844562   ⟸   XM_037988634
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844563   ⟸   XM_037988635
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037844570   ⟸   XM_037988642
- Peptide Label: isoform X11
RefSeq Acc Id: XP_037844567   ⟸   XM_037988639
- Peptide Label: isoform X8
RefSeq Acc Id: XP_037844571   ⟸   XM_037988643
- Peptide Label: isoform X13
RefSeq Acc Id: XP_037844569   ⟸   XM_037988641
- Peptide Label: isoform X10
RefSeq Acc Id: XP_037844568   ⟸   XM_037988640
- Peptide Label: isoform X9


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011653 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009738.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  1.20.5.2440 UniProtKB/TrEMBL
  1.20.5.340 UniProtKB/TrEMBL
InterPro ELKS/CAST UniProtKB/TrEMBL
  FIP-RBD_C_sf UniProtKB/TrEMBL
  Rab-bd_FIP-RBD UniProtKB/TrEMBL
KEGG Report csab:103218364 UniProtKB/TrEMBL
NCBI Gene ERC1 ENTREZGENE
PANTHER ELKS/RAB6-INTERACTING/CAST FAMILY MEMBER 1 UniProtKB/TrEMBL
  ELKS/RAB6-INTERACTING/CAST PROTEIN UniProtKB/TrEMBL
Pfam Cast UniProtKB/TrEMBL
  RBD-FIP UniProtKB/TrEMBL
PROSITE FIP_RBD UniProtKB/TrEMBL
Superfamily-SCOP SSF144270 UniProtKB/TrEMBL
  Tropomyosin UniProtKB/TrEMBL
UniProt A0A0D9RGW0 ENTREZGENE, UniProtKB/TrEMBL