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Gene: SNAP47 (synaptosome associated protein 47) Chlorocebus sabaeus

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Symbol:

SNAP47

Name:

synaptosome associated protein 47

RGD ID:

18476066

Description:

ENCODES a protein that exhibits SNAP receptor activity (inferred); syntaxin binding (inferred); INVOLVED IN long-term synaptic potentiation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); lung non-small cell carcinoma (ortholog); parathyroid carcinoma (ortholog); FOUND IN asymmetric synapse (ortholog); BLOC-1 complex (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synaptosomal-associated protein 47

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	1,923,751 - 1,968,543 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	1,923,555 - 1,968,497 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	1,806,568 - 1,851,342 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

lung non-small cell carcinoma (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocytic insertion of neurotransmitter receptor to postsynaptic membrane (IEA)

exocytosis (IEA)

long-term synaptic potentiation (IEA,ISO)

synaptic vesicle fusion to presynaptic active zone membrane (IEA)

synaptic vesicle priming (IEA)

vesicle-mediated transport in synapse (IEA)

Cellular Component

asymmetric synapse (ISO)

BLOC-1 complex (ISO)

dendrite (IEA)

glutamatergic synapse (IEA,ISO)

hippocampal mossy fiber to CA3 synapse (ISO)

membrane (IEA)

neuronal cell body (IEA)

plasma membrane (IEA)

postsynaptic density (ISO)

presynapse (IEA)

presynaptic active zone (ISO)

SNARE complex (IEA)

Molecular Function

protein binding (ISO)

SNAP receptor activity (IEA)

syntaxin binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SNAP47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	1,923,751 - 1,968,543 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	1,923,555 - 1,968,497 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	1,806,568 - 1,851,342 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SNAP47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	227,728,168 - 227,781,226 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	227,728,200 - 227,781,826 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	227,915,869 - 227,968,927 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	225,989,320 - 226,035,550 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	201,114,401 - 201,160,635 (+)	NCBI		Celera
Cytogenetic Map	1	q42.13	NCBI
HuRef	1	198,439,260 - 198,485,460 (+)	NCBI		HuRef
CHM1_1	1	229,195,112 - 229,241,660 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	226,917,102 - 226,970,160 (+)	NCBI		T2T-CHM13v2.0

Snap47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,297,967 - 59,340,868 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,297,960 - 59,342,012 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,407,141 - 59,450,041 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,407,134 - 59,451,186 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,220,652 - 59,263,458 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	59,223,345 - 59,266,151 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	59,945,158 - 59,986,056 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.7	NCBI

Snap47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	44,692,430 - 44,733,986 (-)	NCBI		GRCr8
mRatBN7.2	10	44,192,886 - 44,234,435 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,191,218 - 44,234,424 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	48,887,305 - 48,928,825 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,377,674 - 48,419,194 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	43,881,279 - 43,922,803 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	45,757,196 - 45,798,734 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	45,757,197 - 45,798,715 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	45,512,870 - 45,554,413 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	45,712,924 - 45,754,443 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	45,726,547 - 45,768,066 (-)	NCBI
Celera	10	43,454,703 - 43,496,156 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Snap47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955581	491,526 - 525,223 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955581	486,087 - 525,171 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNAP47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	21,824,943 - 21,877,588 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	21,765,651 - 21,818,237 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	203,128,827 - 203,181,521 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	208,108,638 - 208,161,139 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	208,115,118 - 208,161,139 (+)	Ensembl	panpan1.1		panPan2

SNAP47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	1,058,891 - 1,104,568 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	1,056,802 - 1,104,574 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	696,791 - 746,546 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	781,922 - 827,756 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	781,019 - 827,776 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	972,472 - 1,036,497 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	753,185 - 798,987 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	741,820 - 787,672 (-)	NCBI		UU_Cfam_GSD_1.0

Snap47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	87,971,982 - 88,036,305 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936864	318,096 - 377,526 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936864	313,650 - 381,553 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNAP47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	50,812,309 - 50,921,744 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	54,303,886 - 54,412,567 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Snap47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624937	687,988 - 730,674 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624937	695,245 - 728,656 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007988221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000014518 ⟹ ENSCSAP00000012490

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	1,923,555 - 1,968,497 (-)	Ensembl

RefSeq Acc Id:

XM_007988221 ⟹ XP_007986412

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	1,923,751 - 1,968,543 (-)	NCBI
Vero_WHO_p1.0	NW_023666055	1,806,568 - 1,851,342 (-)	NCBI

Sequence:

show sequence

ATGCGCGCGGCTCGCCGCGGTCTTCTCTGCGCAGGCGCCGAGGGGTAGAGGCGCCGCGAACGCC
TGTGGGTCACGTCTGGTTTTCCCCAGAGGCAGAAGAGGCCTGGACCTTGGCGCAGACAGACCCA
GGAACAGATGAGCAGGGACATCTGCATCCACGCCTGGCCATGCACCTACTACCTGGAGCCCGAG
AGGCGATGGGTTGCTGGACAACTGTCCTTAACCTTGCTGTCGCTCAGGTTCATGACTGACAGCA
CTGGAGAGATTCTAGTCAGCTTCCCCCTCTCCAGCATAGTTGAGATCAAGAAGGAGACTTCTCA
TTTTATCTTCAGCTCCATCACCATCCTGGAGAAGGGCCATGCCAAGCACTGGTTCAGCTCCCTG
CGGCCAAGTCGAAATGTGGTCTTCAGCATCATTGAGCATTTCTGGAGGGAGCTGCTGCTGTCTC
AGCCTGGAGCTGTGGCAGACGTGTCTGGCCCCAGGACCCGGGGCAAGGAGCTGACGGGACTCAT
GGCTGGATCCCAGAAACGCCTGGAGGACACGGCGAGGGTCCTGCACCACCAGGGCCAGCAGCTG
GACAGCGTCATGAGAGGCCTGGACAAGATGGAGTCAGACCTAGAGGTGGCGGACAGATTGCTGA
CAGAACTGGAATCTCCTGCTTGGTGGCCCTTTAGCTCCAAGCTTTGGAAGACGCCACCGGAAAC
AAAGCCTAGGGAAGGTGTCTCTGTGACCAGTTGTGAACCCTTTGGGAAAGAAAGTATACTGATA
AAAATTCCTGCCATTATTTCTCACAGAACAGAGTCTCACGTTAAGCCAGGGAGGCTCACTGTCC
TTGTGTCTGGGTTGGAAATACATGACTCCAGTTCTTTGCTCATGCACAGGTTTGAAAGAGAGGA
CGTGGATGACATCAAGGTCTACTCACCTTATGAAATTAGCATCCGCCAGCGGTTTATTGGAAAG
CCAGACATGGCCTATCGTTTGATATCTGCCAAGATGCCAGAGGTTATCCCCATTTTAGAAGTGC
AATTCAGCAAGAAGATGGAGCTGTCAGAAGATGCGTTGGTGCTCAGAAGCACAAGAACCTCTTC
CCCCGCAGAGAAGAGCTCCTCAGTCTGGCATGCAGCATCTGGGCTGATGGGCCGTACCCTGCAC
CCTGAGCCACCCATAGTAGACCAGGAGGGCACAGCACTGCACCTGCAGACAAGCCTGCCAGCCC
TTTCCGAGGCGGATACCCAGGAACTAACCCAGATCCTGAGGAGGATGAAGGGGCTGGCCCTGGA
GGCCGAGAGTGAGCTAGAGAGACAAGACGAAGCCCTGGATGGCGTCGCAGCAGCTGTGGACAGG
GCAACCTTGACCATCGACAAGCACAACAGGCGGATGAAGAGGCTGACCTAGGGGCAGAGTGCCC
CTGCATTCCTGTCTCTGCCTGCACATCCCCCTGAGATGGAGGACTGAGAGTCGGTGCCAGGGCT
GCAGAGGCCTGTGGCCCTCCGGCGTGGTCTTCCTCTGGATGGGGCTGCTACTATGGGGCCACCT
CCACACTAGGGGCCTCCACAGGTGTGCGCTATGCCTGCCCCCCACTCGGCTCTCCCTGTTGCCG
GACAGGACCCAGCCACATGTTCTGCAGATGCCGCAGAAGTGTGGACCATGGCGGGACCCCAAGG
ACACTTGGCACAGGCCTGGAAGAAGCCAATGCGCCACCCTCCTCTTGTCTTGGCTCCCTTTCAT
GGACAGACTGGCCTTCTTAGCTGTACTATGAATTTGTGAGTGAAGTTAGAACCCAGCTCACTGA
GCCAGCTCACTTTGAGGGCATCCTATAAACACCCAACTGTTCTTTTATTGTCTCGGTTTTAGCC
AAAAGTGAAATTAGCATGACTGCACCTTTCAAACAGAAATATTGATTTCTGCTTTTATGGCCCC
ATTTCCATCCAGAAATAAAGGGAAATGCTGGCTTTAGAGTGGTT

hide sequence

RefSeq Acc Id:

XM_037985480 ⟹ XP_037841408

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,806,568 - 1,848,836 (-)	NCBI

RefSeq Acc Id:

XM_037985481 ⟹ XP_037841409

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	1,806,568 - 1,851,331 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007986412	(Get FASTA)	NCBI Sequence Viewer
	XP_037841408	(Get FASTA)	NCBI Sequence Viewer
	XP_037841409	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000012490.1

RefSeq Acc Id:	XP_007986412 ⟸ XM_007988221
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RV51 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000012490 ⟸ ENSCSAT00000014518

RefSeq Acc Id:	XP_037841409 ⟸ XM_037985481
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037841408 ⟸ XM_037985480
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RV51 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000016423	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000014518.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
InterPro	PH-like_dom_sf	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
NCBI Gene	SNAP47	ENTREZGENE
PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	UniProtKB/TrEMBL
	SYNAPTOSOMAL-ASSOCIATED PROTEIN 47	UniProtKB/TrEMBL
PROSITE	T_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SNARE fusion complex	UniProtKB/TrEMBL
UniProt	A0A0D9RV51	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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