Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lung non-small cell carcinoma | | ISO | SNAP47 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:34664776 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | lung non-small cell carcinoma | | ISO | SNAP47 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:34664776 | |
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# | Reference Title | Reference Citation |
1. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
3. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Database resources of the National Center for Biotechnology Information. | Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6. |
PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:12477932 | PMID:12904583 | PMID:14610273 | PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:16602821 | PMID:16621800 |
PMID:17967808 | PMID:18448421 | PMID:18799693 | PMID:21677750 | PMID:21873635 | PMID:23064108 | PMID:23395379 | PMID:26514267 | PMID:27113764 | PMID:27889896 | PMID:28378742 | PMID:30973865 |
PMID:32325033 | PMID:32554809 | PMID:33378226 | PMID:33567284 | PMID:36417873 |
Snap47 (Mus musculus - house mouse) |
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SNAP47 (Homo sapiens - human) |
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Snap47 (Rattus norvegicus - Norway rat) |
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Snap47 (Chinchilla lanigera - long-tailed chinchilla) |
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SNAP47 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SNAP47 (Canis lupus familiaris - dog) |
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Snap47 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SNAP47 (Sus scrofa - pig) |
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SNAP47 (Chlorocebus sabaeus - green monkey) |
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Snap47 (Heterocephalus glaber - naked mole-rat) |
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Variants in Snap47
1132 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AI429566 |
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UniSTS:236588 |
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RefSeq Transcripts | NM_001356452 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001356454 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_144521 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534022 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534023 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006534024 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030246251 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030246252 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030246253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030246254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156919 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156920 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156921 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036156922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AI842642 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK002329 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK028053 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK049330 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK075640 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK081883 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK144165 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK185202 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK189462 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK200721 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK201667 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK211035 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK213485 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL713994 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC023182 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC029025 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY104758 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CD363532 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000010038 ⟹ ENSMUSP00000010038 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000120940 ⟹ ENSMUSP00000113555 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000125846 ⟹ ENSMUSP00000119433 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000132969 ⟹ ENSMUSP00000116170 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136436 ⟹ ENSMUSP00000115762 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000145550 ⟹ ENSMUSP00000114816 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000150297 ⟹ ENSMUSP00000122508 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000156146 ⟹ ENSMUSP00000121880 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001356452 ⟹ NP_001343381 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001356454 ⟹ NP_001343383 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_144521 ⟹ NP_653104 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534022 ⟹ XP_006534085 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534023 ⟹ XP_006534086 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006534024 ⟹ XP_006534087 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030246251 ⟹ XP_030102111 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030246252 ⟹ XP_030102112 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030246253 ⟹ XP_030102113 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030246254 ⟹ XP_030102114 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156919 ⟹ XP_036012812 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156920 ⟹ XP_036012813 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156921 ⟹ XP_036012814 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036156922 ⟹ XP_036012815 | ||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001343381 | (Get FASTA) | NCBI Sequence Viewer |
NP_001343383 | (Get FASTA) | NCBI Sequence Viewer | |
NP_653104 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534085 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534086 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006534087 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030102111 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030102112 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030102113 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030102114 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012812 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012813 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012814 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036012815 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH23182 | (Get FASTA) | NCBI Sequence Viewer |
AAH29025 | (Get FASTA) | NCBI Sequence Viewer | |
BAC25723 | (Get FASTA) | NCBI Sequence Viewer | |
BAC33686 | (Get FASTA) | NCBI Sequence Viewer | |
BAC35874 | (Get FASTA) | NCBI Sequence Viewer | |
BAE25743 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000010038 | ||
ENSMUSP00000010038.4 | |||
ENSMUSP00000113555.2 | |||
ENSMUSP00000114816.2 | |||
ENSMUSP00000115762.2 | |||
ENSMUSP00000116170.2 | |||
ENSMUSP00000119433.2 | |||
ENSMUSP00000121880.2 | |||
ENSMUSP00000122508.2 | |||
GenBank Protein | Q8R570 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_653104 ⟸ NM_144521 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot), Q8R570 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534085 ⟸ XM_006534022 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot), Q8R570 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534087 ⟸ XM_006534024 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot), Q8R570 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006534086 ⟸ XM_006534023 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot), Q8R570 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001343383 ⟸ NM_001356454 |
- Peptide Label: | isoform 2 |
- UniProtKB: | B2FDF6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001343381 ⟸ NM_001356452 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | XP_030102111 ⟸ XM_030246251 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | XP_030102112 ⟸ XM_030246252 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | XP_030102114 ⟸ XM_030246254 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | XP_030102113 ⟸ XM_030246253 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
RefSeq Acc Id: | ENSMUSP00000119433 ⟸ ENSMUST00000125846 |
RefSeq Acc Id: | ENSMUSP00000122508 ⟸ ENSMUST00000150297 |
RefSeq Acc Id: | ENSMUSP00000114816 ⟸ ENSMUST00000145550 |
RefSeq Acc Id: | ENSMUSP00000116170 ⟸ ENSMUST00000132969 |
RefSeq Acc Id: | ENSMUSP00000113555 ⟸ ENSMUST00000120940 |
RefSeq Acc Id: | ENSMUSP00000010038 ⟸ ENSMUST00000010038 |
RefSeq Acc Id: | ENSMUSP00000115762 ⟸ ENSMUST00000136436 |
RefSeq Acc Id: | ENSMUSP00000121880 ⟸ ENSMUST00000156146 |
RefSeq Acc Id: | XP_036012814 ⟸ XM_036156921 |
- Peptide Label: | isoform X2 |
- UniProtKB: | B2FDF6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_036012813 ⟸ XM_036156920 |
- Peptide Label: | isoform X2 |
- UniProtKB: | B2FDF6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_036012815 ⟸ XM_036156922 |
- Peptide Label: | isoform X2 |
- UniProtKB: | B2FDF6 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_036012812 ⟸ XM_036156919 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q8R570 (UniProtKB/Swiss-Prot), Q3UNK4 (UniProtKB/Swiss-Prot), Q8BK87 (UniProtKB/Swiss-Prot) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q8R570-F1-model_v2 | AlphaFold | Q8R570 | 1-413 | view protein structure |
RGD ID: | 6820136 | ||||||||
Promoter ID: | MM_KWN:7636 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000045279, ENSMUST00000068575, ENSMUST00000116373, OTTMUST00000012811, OTTMUST00000012812, OTTMUST00000012813, OTTMUST00000012814, OTTMUST00000012836, OTTMUST00000012838, OTTMUST00000076157, OTTMUST00000076501, UC007JDT.1, UC007JDX.1 | ||||||||
Position: |
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RGD ID: | 8674810 | ||||||||
Promoter ID: | EPDNEW_M15436 | ||||||||
Type: | initiation region | ||||||||
Name: | Snap47_1 | ||||||||
Description: | Mus musculus synaptosomal-associated protein, 47 , transcriptvariant 1, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1915076 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000009894 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000010038 | ENTREZGENE |
ENSMUST00000010038.10 | UniProtKB/Swiss-Prot | |
ENSMUST00000120940.8 | UniProtKB/TrEMBL | |
ENSMUST00000125846.2 | UniProtKB/TrEMBL | |
ENSMUST00000132969.8 | UniProtKB/TrEMBL | |
ENSMUST00000136436.2 | UniProtKB/TrEMBL | |
ENSMUST00000145550.2 | UniProtKB/TrEMBL | |
ENSMUST00000150297.2 | UniProtKB/TrEMBL | |
ENSMUST00000156146.8 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.5.110 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
2.30.29.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | GRAM | UniProtKB/TrEMBL |
PH-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
T_SNARE_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:67826 | UniProtKB/Swiss-Prot |
MGD | MGI:1915076 | ENTREZGENE |
NCBI Gene | 67826 | ENTREZGENE |
PANTHER | SYNAPTOSOMAL ASSOCIATED PROTEIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SYNAPTOSOMAL-ASSOCIATED PROTEIN 47 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | GRAM | UniProtKB/TrEMBL |
PhenoGen | Snap47 | PhenoGen |
PROSITE | T_SNARE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Superfamily-SCOP | SNARE fusion complex | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A0G2JDA4_MOUSE | UniProtKB/TrEMBL |
B2FDF6 | ENTREZGENE, UniProtKB/TrEMBL | |
B2FDF7_MOUSE | UniProtKB/TrEMBL | |
I7HFU4_MOUSE | UniProtKB/TrEMBL | |
I7HIK2_MOUSE | UniProtKB/TrEMBL | |
I7HPB1_MOUSE | UniProtKB/TrEMBL | |
J3JS29_MOUSE | UniProtKB/TrEMBL | |
Q3UNK4 | ENTREZGENE | |
Q8BK87 | ENTREZGENE | |
Q8R570 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q3UNK4 | UniProtKB/Swiss-Prot |
Q8BK87 | UniProtKB/Swiss-Prot |