Snap47 (synaptosomal-associated protein, 47) - Rat Genome Database

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Gene: Snap47 (synaptosomal-associated protein, 47) Mus musculus
Analyze
Symbol: Snap47
Name: synaptosomal-associated protein, 47
RGD ID: 1332461
MGI Page MGI
Description: Predicted to enable SNAP receptor activity and syntaxin binding activity. Involved in exocytic insertion of neurotransmitter receptor to postsynaptic membrane and vesicle-mediated transport in synapse. Acts upstream of or within long-term synaptic potentiation. Located in several cellular components, including glutamatergic synapse; neuronal cell body; and synaptic vesicle membrane. Is expressed in several structures, including brain; genitourinary system; liver; lung; and spleen. Orthologous to human SNAP47 (synaptosome associated protein 47); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110031B06Rik; RP23-378H5.4; SNA; SNAP-47; synaptosomal-associated 47 kDa protein; synaptosomal-associated protein 47
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,297,967 - 59,340,868 (-)NCBIGRCm39mm39
GRCm39 Ensembl1159,297,960 - 59,342,012 (-)Ensembl
GRCm381159,407,141 - 59,450,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,407,134 - 59,451,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,220,652 - 59,263,458 (-)NCBIGRCm37mm9NCBIm37
MGSCv361159,223,345 - 59,266,151 (-)NCBImm8
MGSCv361159,945,158 - 59,986,056 (-)NCBImm8
Cytogenetic Map11B1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16621800  
PMID:17967808   PMID:18448421   PMID:18799693   PMID:21677750   PMID:21873635   PMID:23064108   PMID:23395379   PMID:26514267   PMID:27113764   PMID:27889896   PMID:28378742   PMID:32325033  
PMID:33378226  


Genomics

Comparative Map Data
Snap47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,297,967 - 59,340,868 (-)NCBIGRCm39mm39
GRCm39 Ensembl1159,297,960 - 59,342,012 (-)Ensembl
GRCm381159,407,141 - 59,450,041 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,407,134 - 59,451,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,220,652 - 59,263,458 (-)NCBIGRCm37mm9NCBIm37
MGSCv361159,223,345 - 59,266,151 (-)NCBImm8
MGSCv361159,945,158 - 59,986,056 (-)NCBImm8
Cytogenetic Map11B1.3NCBI
SNAP47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1227,728,200 - 227,781,826 (+)EnsemblGRCh38hg38GRCh38
GRCh381227,728,168 - 227,781,228 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371227,915,869 - 227,968,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361225,989,320 - 226,035,550 (+)NCBINCBI36hg18NCBI36
Celera1201,114,401 - 201,160,635 (+)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1198,439,260 - 198,485,460 (+)NCBIHuRef
CHM1_11229,195,112 - 229,241,660 (+)NCBICHM1_1
Snap47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21044,192,886 - 44,234,435 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1044,191,218 - 44,234,424 (-)Ensembl
Rnor_6.01045,757,196 - 45,798,734 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,757,197 - 45,798,715 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,512,870 - 45,554,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,712,924 - 45,754,443 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,726,547 - 45,768,066 (-)NCBI
Celera1043,454,703 - 43,496,156 (-)NCBICelera
Cytogenetic Map10q22NCBI
Snap47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581491,526 - 525,223 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955581486,087 - 525,171 (-)NCBIChiLan1.0ChiLan1.0
SNAP47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11208,108,638 - 208,161,139 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1208,115,118 - 208,161,139 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01203,128,827 - 203,181,521 (+)NCBIMhudiblu_PPA_v0panPan3
SNAP47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,058,891 - 1,104,568 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,056,802 - 1,104,574 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14696,791 - 746,546 (-)NCBI
ROS_Cfam_1.014781,922 - 827,756 (-)NCBI
UMICH_Zoey_3.114972,472 - 1,036,497 (-)NCBI
UNSW_CanFamBas_1.014753,185 - 798,987 (-)NCBI
UU_Cfam_GSD_1.014741,820 - 787,672 (-)NCBI
Snap47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,971,982 - 88,036,305 (-)NCBI
SpeTri2.0NW_004936864313,650 - 381,553 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAP47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1250,812,309 - 50,921,744 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2254,303,886 - 54,412,567 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNAP47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,923,751 - 1,968,543 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl251,923,555 - 1,968,497 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660551,806,568 - 1,851,342 (-)NCBIVero_WHO_p1.0
Snap47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937695,245 - 728,656 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI429566  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,407,320 - 59,407,543UniSTSGRCm38
MGSCv371159,220,822 - 59,221,045UniSTSGRCm37
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11783.74UniSTS
UniSTS:236588  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381159,407,411 - 59,407,581UniSTSGRCm38
MGSCv371159,220,913 - 59,221,083UniSTSGRCm37
Cytogenetic Map11B1.3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
11532697Sluc36_msusceptibility to lung cancer 36 (mouse)115936579169591873Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1254
Count of miRNA genes:575
Interacting mature miRNAs:683
Transcripts:ENSMUST00000010038, ENSMUST00000120940, ENSMUST00000125846, ENSMUST00000132969, ENSMUST00000136436, ENSMUST00000145550, ENSMUST00000150297, ENSMUST00000156146
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI842642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY104758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD363532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000010038   ⟹   ENSMUSP00000010038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,297,960 - 59,340,825 (-)Ensembl
GRCm38.p6 Ensembl1159,407,134 - 59,449,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120940   ⟹   ENSMUSP00000113555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,297,970 - 59,340,833 (-)Ensembl
GRCm38.p6 Ensembl1159,407,144 - 59,450,007 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125846   ⟹   ENSMUSP00000119433
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,329,275 - 59,342,012 (-)Ensembl
GRCm38.p6 Ensembl1159,438,449 - 59,451,186 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132969   ⟹   ENSMUSP00000116170
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,328,860 - 59,340,825 (-)Ensembl
GRCm38.p6 Ensembl1159,438,034 - 59,449,999 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136436   ⟹   ENSMUSP00000115762
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,319,593 - 59,340,739 (-)Ensembl
GRCm38.p6 Ensembl1159,428,767 - 59,449,913 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145550   ⟹   ENSMUSP00000114816
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,329,082 - 59,338,317 (-)Ensembl
GRCm38.p6 Ensembl1159,438,256 - 59,447,491 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150297   ⟹   ENSMUSP00000122508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,329,114 - 59,340,742 (-)Ensembl
GRCm38.p6 Ensembl1159,438,288 - 59,449,916 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156146   ⟹   ENSMUSP00000121880
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1159,319,587 - 59,340,825 (-)Ensembl
GRCm38.p6 Ensembl1159,428,761 - 59,449,999 (-)Ensembl
RefSeq Acc Id: NM_001356452   ⟹   NP_001343381
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,860 (-)NCBI
GRCm381159,407,141 - 59,450,034 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001356454   ⟹   NP_001343383
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,860 (-)NCBI
GRCm381159,407,141 - 59,450,034 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144521   ⟹   NP_653104
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,860 (-)NCBI
GRCm381159,407,141 - 59,450,034 (-)NCBI
MGSCv371159,220,652 - 59,263,458 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534022   ⟹   XP_006534085
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,868 (-)NCBI
GRCm381159,407,141 - 59,450,041 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534023   ⟹   XP_006534086
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,833 (-)NCBI
GRCm381159,407,141 - 59,450,007 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534024   ⟹   XP_006534087
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,848 (-)NCBI
GRCm381159,407,141 - 59,450,023 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246251   ⟹   XP_030102111
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,756 (-)NCBI
GRCm381159,407,141 - 59,449,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246252   ⟹   XP_030102112
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,767 (-)NCBI
GRCm381159,407,141 - 59,449,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246253   ⟹   XP_030102113
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,749 (-)NCBI
GRCm381159,407,141 - 59,449,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246254   ⟹   XP_030102114
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,769 (-)NCBI
GRCm381159,407,141 - 59,449,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156919   ⟹   XP_036012812
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,336,597 (-)NCBI
RefSeq Acc Id: XM_036156920   ⟹   XP_036012813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,854 (-)NCBI
RefSeq Acc Id: XM_036156921   ⟹   XP_036012814
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,854 (-)NCBI
RefSeq Acc Id: XM_036156922   ⟹   XP_036012815
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391159,297,967 - 59,340,774 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_653104   ⟸   NM_144521
- Peptide Label: isoform 1
- UniProtKB: Q8R570 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534085   ⟸   XM_006534022
- Peptide Label: isoform X1
- UniProtKB: Q8R570 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534087   ⟸   XM_006534024
- Peptide Label: isoform X1
- UniProtKB: Q8R570 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534086   ⟸   XM_006534023
- Peptide Label: isoform X1
- UniProtKB: Q8R570 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343383   ⟸   NM_001356454
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001343381   ⟸   NM_001356452
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030102111   ⟸   XM_030246251
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102112   ⟸   XM_030246252
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102114   ⟸   XM_030246254
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030102113   ⟸   XM_030246253
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000119433   ⟸   ENSMUST00000125846
RefSeq Acc Id: ENSMUSP00000122508   ⟸   ENSMUST00000150297
RefSeq Acc Id: ENSMUSP00000114816   ⟸   ENSMUST00000145550
RefSeq Acc Id: ENSMUSP00000116170   ⟸   ENSMUST00000132969
RefSeq Acc Id: ENSMUSP00000113555   ⟸   ENSMUST00000120940
RefSeq Acc Id: ENSMUSP00000010038   ⟸   ENSMUST00000010038
RefSeq Acc Id: ENSMUSP00000115762   ⟸   ENSMUST00000136436
RefSeq Acc Id: ENSMUSP00000121880   ⟸   ENSMUST00000156146
RefSeq Acc Id: XP_036012814   ⟸   XM_036156921
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012813   ⟸   XM_036156920
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012815   ⟸   XM_036156922
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012812   ⟸   XM_036156919
- Peptide Label: isoform X1
Promoters
RGD ID:6820136
Promoter ID:MM_KWN:7636
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000045279,   ENSMUST00000068575,   ENSMUST00000116373,   OTTMUST00000012811,   OTTMUST00000012812,   OTTMUST00000012813,   OTTMUST00000012814,   OTTMUST00000012836,   OTTMUST00000012838,   OTTMUST00000076157,   OTTMUST00000076501,   UC007JDT.1,   UC007JDX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361159,263,284 - 59,263,784 (-)MPROMDB
RGD ID:8674810
Promoter ID:EPDNEW_M15436
Type:initiation region
Name:Snap47_1
Description:Mus musculus synaptosomal-associated protein, 47 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381159,450,014 - 59,450,074EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915076 AgrOrtholog
Ensembl Genes ENSMUSG00000009894 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000010038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000113555 UniProtKB/TrEMBL
  ENSMUSP00000114816 UniProtKB/TrEMBL
  ENSMUSP00000115762 UniProtKB/TrEMBL
  ENSMUSP00000116170 UniProtKB/TrEMBL
  ENSMUSP00000119433 UniProtKB/TrEMBL
  ENSMUSP00000121880 UniProtKB/TrEMBL
  ENSMUSP00000122508 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000010038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120940 UniProtKB/TrEMBL
  ENSMUST00000125846 UniProtKB/TrEMBL
  ENSMUST00000132969 UniProtKB/TrEMBL
  ENSMUST00000136436 UniProtKB/TrEMBL
  ENSMUST00000145550 UniProtKB/TrEMBL
  ENSMUST00000150297 UniProtKB/TrEMBL
  ENSMUST00000156146 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67826 UniProtKB/Swiss-Prot
MGD MGI:1915076 ENTREZGENE
NCBI Gene 67826 ENTREZGENE
PhenoGen Snap47 PhenoGen
PROSITE T_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JDA4_MOUSE UniProtKB/TrEMBL
  B2FDF6_MOUSE UniProtKB/TrEMBL
  B2FDF7_MOUSE UniProtKB/TrEMBL
  I7HFU4_MOUSE UniProtKB/TrEMBL
  I7HIK2_MOUSE UniProtKB/TrEMBL
  I7HPB1_MOUSE UniProtKB/TrEMBL
  J3JS29_MOUSE UniProtKB/TrEMBL
  Q8R570 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3UNK4 UniProtKB/Swiss-Prot
  Q8BK87 UniProtKB/Swiss-Prot