AP3D1 (adaptor related protein complex 3 subunit delta 1) - Rat Genome Database

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Gene: AP3D1 (adaptor related protein complex 3 subunit delta 1) Chlorocebus sabaeus
Analyze
Symbol: AP3D1
Name: adaptor related protein complex 3 subunit delta 1
RGD ID: 18573877
Description: INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH cyclic hematopoiesis (ortholog); genetic disease (ortholog); hemorrhagic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adaptor related protein complex 3 delta 1 subunit; AP-3 complex subunit delta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,901,669 - 1,951,352 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,901,507 - 1,951,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660816,783,776 - 6,838,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AP3D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.161,901,669 - 1,951,352 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl61,901,507 - 1,951,314 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660816,783,776 - 6,838,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AP3D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,100,988 - 2,164,616 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,100,988 - 2,164,468 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,100,987 - 2,151,565 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,051,993 - 2,102,556 (-)NCBINCBI36Build 36hg18NCBI36
Build 34192,051,987 - 2,102,554NCBI
Celera192,035,746 - 2,085,826 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef191,873,271 - 1,922,400 (-)NCBIHuRef
CHM1_1192,100,857 - 2,151,100 (-)NCBICHM1_1
T2T-CHM13v2.0192,074,043 - 2,137,861 (-)NCBIT2T-CHM13v2.0
Ap3d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391080,542,790 - 80,578,137 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1080,542,790 - 80,578,098 (-)EnsemblGRCm39 Ensembl
GRCm381080,706,956 - 80,742,303 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1080,706,956 - 80,742,264 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,169,723 - 80,204,956 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,110,107 - 80,145,340 (-)NCBIMGSCv36mm8
Celera1081,725,359 - 81,760,588 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Ap3d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr879,620,909 - 9,656,350 (+)NCBIGRCr8
mRatBN7.278,970,249 - 9,005,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,970,291 - 9,005,643 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,848,541 - 11,884,095 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0713,724,050 - 13,759,604 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0711,590,505 - 11,626,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,838,639 - 11,873,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,838,639 - 11,873,984 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0712,006,378 - 12,041,244 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4710,480,810 - 10,516,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1710,480,817 - 10,516,163 (+)NCBI
Celera77,153,021 - 7,188,363 (+)NCBICelera
Cytogenetic Map7q11NCBI
Ap3d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,972,433 - 6,012,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,972,177 - 6,012,525 (+)NCBIChiLan1.0ChiLan1.0
AP3D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2206,482,829 - 6,534,247 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,713,578 - 5,765,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0191,110,419 - 1,161,826 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1192,084,349 - 2,135,058 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl192,085,540 - 2,137,593 (-)Ensemblpanpan1.1panPan2
AP3D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,893,479 - 56,932,460 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,893,535 - 56,931,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2056,688,442 - 56,727,446 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02057,626,251 - 57,665,286 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2057,626,308 - 57,665,281 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12056,678,263 - 56,717,233 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02057,163,351 - 57,202,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02057,363,843 - 57,402,849 (+)NCBIUU_Cfam_GSD_1.0
Ap3d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,572,359 - 216,611,142 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,222,466 - 1,262,676 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,223,646 - 1,262,577 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AP3D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl276,428,476 - 76,471,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1276,428,443 - 76,471,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2276,963,774 - 76,969,977 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Ap3d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,710,025 - 6,749,434 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,710,081 - 6,750,315 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AP3D1
1594 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000009940   ⟹   ENSCSAP00000008046
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl61,901,507 - 1,951,314 (-)Ensembl
RefSeq Acc Id: XM_037994428   ⟹   XP_037850356
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660816,783,776 - 6,838,998 (+)NCBI
RefSeq Acc Id: XM_037994429   ⟹   XP_037850357
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660816,783,776 - 6,838,998 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037850356 (Get FASTA)   NCBI Sequence Viewer  
  XP_037850357 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008046.1
Ensembl Acc Id: ENSCSAP00000008046   ⟸   ENSCSAT00000009940
RefSeq Acc Id: XP_037850356   ⟸   XM_037994428
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RHF7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037850357   ⟸   XM_037994429
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RHF7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011851 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009940.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  Longin domain UniProtKB/TrEMBL
InterPro AP3_complex_dsu UniProtKB/TrEMBL
  AP3D_dom_metazoa UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/TrEMBL
NCBI Gene AP3D1 ENTREZGENE
PANTHER AP-3 COMPLEX SUBUNIT DELTA-1 UniProtKB/TrEMBL
  PTHR22781 UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/TrEMBL
  AP3D1 UniProtKB/TrEMBL
PIRSF AP3_complex_delta UniProtKB/TrEMBL
SMART BLVR UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9RHF7 ENTREZGENE, UniProtKB/TrEMBL