ATP6V0A4 (ATPase H+ transporting V0 subunit a4) - Rat Genome Database

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Gene: ATP6V0A4 (ATPase H+ transporting V0 subunit a4) Chlorocebus sabaeus
Analyze
Symbol: ATP6V0A4
Name: ATPase H+ transporting V0 subunit a4
RGD ID: 18524379
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN ossification (ortholog); proton transmembrane transport (ortholog); regulation of pH (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis (ortholog); Distal Renal Tubular Acidosis 3, Autosomal Recessive (ortholog); genetic disease (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a isoform 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,407,831 - 107,505,300 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660724,258,221 - 4,314,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,407,831 - 107,505,300 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660724,258,221 - 4,314,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ATP6V0A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,706,294 - 138,798,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7138,706,294 - 138,799,560 (-)EnsemblGRCh38hg38GRCh38
GRCh377138,391,039 - 138,482,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,041,579 - 138,133,481 (-)NCBINCBI36Build 36hg18NCBI36
Build 347137,848,294 - 137,916,037NCBI
Celera7133,128,799 - 133,220,749 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7132,702,109 - 132,793,853 (-)NCBIHuRef
CHM1_17138,324,308 - 138,416,716 (-)NCBICHM1_1
T2T-CHM13v2.07140,018,750 - 140,111,076 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,735,216 - 137,827,150 (-)NCBI
Atp6v0a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,025,418 - 38,101,521 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,025,418 - 38,101,521 (-)EnsemblGRCm39 Ensembl
GRCm38638,048,483 - 38,124,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,048,483 - 38,124,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv37637,998,483 - 38,074,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36637,978,091 - 38,054,182 (-)NCBIMGSCv36mm8
Celera638,029,008 - 38,104,935 (-)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.5NCBI
Atp6v0a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8467,727,145 - 67,809,092 (-)NCBIGRCr8
mRatBN7.2466,760,163 - 66,842,126 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,760,159 - 66,842,110 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx471,701,190 - 71,783,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0467,622,267 - 67,704,722 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,020,233 - 66,102,520 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0465,736,585 - 65,821,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,736,585 - 65,818,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,554,091 - 65,639,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,588,970 - 65,671,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1465,865,107 - 65,930,467 (-)NCBI
Celera461,781,600 - 61,863,525 (-)NCBICelera
Cytogenetic Map4q23NCBI
Atp6v0a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554944,199,803 - 4,251,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554944,174,542 - 4,251,450 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26175,521,062 - 175,586,363 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1727,531,314 - 27,596,491 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07130,665,997 - 130,758,537 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,154,382 - 143,210,822 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,154,712 - 143,218,802 (-)Ensemblpanpan1.1panPan2
ATP6V0A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,864,938 - 9,949,740 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,885,149 - 9,949,708 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,706,132 - 10,790,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,784,775 - 9,869,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,804,731 - 9,869,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,733,524 - 9,818,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,576,588 - 9,661,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,650,052 - 9,734,848 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511816,113,322 - 16,180,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,039,705 - 3,086,844 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365923,039,911 - 3,083,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,919,422 - 10,966,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,868,208 - 10,966,801 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21811,330,847 - 11,430,526 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Atp6v0a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,149,589 - 19,194,158 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,149,353 - 19,219,242 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_037991141   ⟹   XP_037847069
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,258,221 - 4,308,736 (-)NCBI
RefSeq Acc Id: XM_037991142   ⟹   XP_037847070
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,258,221 - 4,308,742 (-)NCBI
RefSeq Acc Id: XM_037991143   ⟹   XP_037847071
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,258,221 - 4,308,765 (-)NCBI
RefSeq Acc Id: XM_037991144   ⟹   XP_037847072
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,258,221 - 4,308,761 (-)NCBI
RefSeq Acc Id: XM_037991145   ⟹   XP_037847073
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660724,258,221 - 4,314,820 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_037847073   ⟸   XM_037991145
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037847071   ⟸   XM_037991143
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037847072   ⟸   XM_037991144
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037847070   ⟸   XM_037991142
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037847069   ⟸   XM_037991141
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene ATP6V0A4 ENTREZGENE