STX7 (syntaxin 7) - Rat Genome Database

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Gene: STX7 (syntaxin 7) Chlorocebus sabaeus
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Symbol: STX7
Name: syntaxin 7
RGD ID: 18561515
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); SNARE binding (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); synaptic vesicle to endosome fusion (ortholog); vesicle fusion (ortholog); FOUND IN endosome (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: syntaxin-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11341,029,992 - 41,086,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1341,030,073 - 41,088,308 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604013,220,150 - 13,275,468 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STX7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11341,029,992 - 41,086,589 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1341,030,073 - 41,088,308 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604013,220,150 - 13,275,468 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
STX7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,445,867 - 132,513,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6132,445,867 - 132,513,198 (-)EnsemblGRCh38hg38GRCh38
GRCh376132,767,006 - 132,834,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366132,822,848 - 132,875,859 (-)NCBINCBI36Build 36hg18NCBI36
Build 346132,822,847 - 132,875,859NCBI
Celera6133,525,518 - 133,581,174 (-)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,353,519 - 130,409,169 (-)NCBIHuRef
CHM1_16133,042,339 - 133,098,018 (-)NCBICHM1_1
T2T-CHM13v2.06133,640,859 - 133,708,445 (-)NCBIT2T-CHM13v2.0
Stx7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391024,025,182 - 24,064,859 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1024,025,200 - 24,066,120 (+)EnsemblGRCm39 Ensembl
GRCm381024,149,289 - 24,188,961 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1024,149,302 - 24,190,222 (+)EnsemblGRCm38mm10GRCm38
MGSCv371023,869,123 - 23,908,765 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361023,838,776 - 23,878,375 (+)NCBIMGSCv36mm8
Celera1025,082,517 - 25,122,173 (+)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1011.45NCBI
Stx7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,016,330 - 23,056,579 (-)NCBIGRCr8
mRatBN7.2121,197,075 - 21,237,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,197,075 - 21,237,279 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx120,973,496 - 21,014,331 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,973,523 - 27,014,359 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,173,353 - 21,214,086 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,241,655 - 22,281,850 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,241,661 - 22,281,788 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0123,721,812 - 23,762,002 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4121,721,897 - 21,762,024 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1121,724,841 - 21,764,969 (-)NCBI
Celera119,947,867 - 19,987,994 (-)NCBICelera
Cytogenetic Map1p12NCBI
Stx7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543612,928,274 - 12,975,745 (-)NCBIChiLan1.0ChiLan1.0
STX7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25152,440,392 - 152,495,586 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16150,345,389 - 150,402,661 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06130,232,041 - 130,289,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16134,342,305 - 134,397,533 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6134,342,304 - 134,398,215 (-)Ensemblpanpan1.1panPan2
STX7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,544,283 - 25,607,179 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,546,596 - 25,607,231 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha126,531,632 - 26,594,249 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,455,483 - 25,518,496 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,458,138 - 25,518,571 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,501,729 - 25,564,656 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,400,189 - 25,462,818 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,663,904 - 25,726,563 (-)NCBIUU_Cfam_GSD_1.0
Stx7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946120,685,451 - 120,733,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936560464,617 - 513,009 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936560464,667 - 512,322 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,184,947 - 31,235,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,184,905 - 31,237,052 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,705,635 - 34,757,859 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Stx7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247536,514,056 - 6,547,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247536,511,516 - 6,554,406 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008007018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000014767   ⟹   ENSCSAP00000012728
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1341,030,073 - 41,088,308 (+)Ensembl
RefSeq Acc Id: XM_008007018   ⟹   XP_008005209
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11341,029,992 - 41,086,589 (+)NCBI
Vero_WHO_p1.0NW_02366604013,220,150 - 13,275,468 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008005209 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000012728
  ENSCSAP00000012728.1
RefSeq Acc Id: XP_008005209   ⟸   XM_008007018
- UniProtKB: A0A0D9RVT9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000012728   ⟸   ENSCSAT00000014767


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000016672 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000014767.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  1.20.58.70 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/TrEMBL
  Syntaxin UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report csab:103240361 UniProtKB/TrEMBL
NCBI Gene STX7 ENTREZGENE
PANTHER PTHR19957 UniProtKB/TrEMBL
  SYNTAXIN-7 UniProtKB/TrEMBL
Pfam SNARE UniProtKB/TrEMBL
  Syntaxin_2 UniProtKB/TrEMBL
PROSITE SYNTAXIN UniProtKB/TrEMBL
  T_SNARE UniProtKB/TrEMBL
SMART SynN UniProtKB/TrEMBL
  t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/TrEMBL
UniProt A0A0D9RVT9 ENTREZGENE, UniProtKB/TrEMBL