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Gene: Stx7 (syntaxin 7) Chinchilla lanigera

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Symbol:

Stx7

Name:

syntaxin 7

RGD ID:

8714855

Description:

ENCODES a protein that exhibits chloride channel inhibitor activity (ortholog); protein-containing complex binding (ortholog); SNAP receptor activity (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); organelle assembly (ortholog); organelle localization (ortholog); FOUND IN azurophil granule (ortholog); early endosome (ortholog); endocytic vesicle (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

syntaxin-7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX7 (syntaxin 7)	NCBI	Ortholog
Mus musculus (house mouse):	Stx7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Stx7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stx7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STX7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx7 (syntaxin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955436	12,928,274 - 12,975,745 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endosome to lysosome transport (ISO)

organelle assembly (ISO)

organelle localization (ISO)

positive regulation of receptor localization to synapse (ISO)

positive regulation of T cell mediated cytotoxicity (ISO)

regulation of protein localization to plasma membrane (ISO)

synaptic vesicle to endosome fusion (ISO)

vesicle fusion (ISO)

vesicle-mediated transport (ISO)

Cellular Component

azurophil granule (ISO)

early endosome (ISO)

endocytic vesicle (ISO)

endosome (ISO)

immunological synapse (ISO)

late endosome (ISO)

late endosome membrane (ISO)

lysosomal membrane (ISO)

lysosome (ISO)

perinuclear region of cytoplasm (ISO)

plasma membrane (ISO)

recycling endosome (ISO)

SNARE complex (ISO)

synaptic vesicle membrane (ISO)

tertiary granule (ISO)

vesicle (ISO)

Molecular Function

chloride channel inhibitor activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

SNAP receptor activity (ISO)

SNARE binding (ISO)

syntaxin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Stx7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955436	12,928,274 - 12,975,745 (-)	NCBI	ChiLan1.0	ChiLan1.0

STX7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	132,445,867 - 132,513,472 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	132,445,867 - 132,513,198 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	132,767,006 - 132,834,611 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	132,822,848 - 132,875,859 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	132,822,847 - 132,875,859	NCBI
Celera	6	133,525,518 - 133,581,174 (-)	NCBI		Celera
Cytogenetic Map	6	q23.2	NCBI
HuRef	6	130,353,519 - 130,409,169 (-)	NCBI		HuRef
CHM1_1	6	133,042,339 - 133,098,018 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	133,640,859 - 133,708,445 (-)	NCBI		T2T-CHM13v2.0

Stx7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	24,025,182 - 24,064,859 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	24,025,200 - 24,066,120 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	24,149,289 - 24,188,961 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	24,149,302 - 24,190,222 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	23,869,123 - 23,908,765 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	23,838,776 - 23,878,375 (+)	NCBI		MGSCv36	mm8
Celera	10	25,082,517 - 25,122,173 (+)	NCBI		Celera
Cytogenetic Map	10	A4	NCBI
cM Map	10	11.45	NCBI

Stx7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	23,016,330 - 23,056,579 (-)	NCBI		GRCr8
mRatBN7.2	1	21,197,075 - 21,237,320 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	21,197,075 - 21,237,279 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	20,973,496 - 21,014,331 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	26,973,523 - 27,014,359 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	21,173,353 - 21,214,086 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	22,241,655 - 22,281,850 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	22,241,661 - 22,281,788 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	23,721,812 - 23,762,002 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	21,721,897 - 21,762,024 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	21,724,841 - 21,764,969 (-)	NCBI
Celera	1	19,947,867 - 19,987,994 (-)	NCBI		Celera
Cytogenetic Map	1	p12	NCBI

STX7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	152,440,392 - 152,495,586 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	150,345,389 - 150,402,661 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	130,232,041 - 130,289,326 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	134,342,305 - 134,397,533 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	134,342,304 - 134,398,215 (-)	Ensembl	panpan1.1		panPan2

STX7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	25,544,283 - 25,607,179 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	25,546,596 - 25,607,231 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	26,531,632 - 26,594,249 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	25,455,483 - 25,518,496 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	25,458,138 - 25,518,571 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	25,501,729 - 25,564,656 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	25,400,189 - 25,462,818 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	25,663,904 - 25,726,563 (-)	NCBI		UU_Cfam_GSD_1.0

Stx7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	120,685,451 - 120,733,071 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936560	464,617 - 513,009 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936560	464,667 - 512,322 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	31,184,947 - 31,235,865 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	31,184,905 - 31,237,052 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	34,705,635 - 34,757,859 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STX7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	41,029,992 - 41,086,589 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	41,030,073 - 41,088,308 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	13,220,150 - 13,275,468 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stx7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	6,514,056 - 6,547,480 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	6,511,516 - 6,554,406 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005389208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005389209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005389210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01033846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01033847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01102992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005389208 ⟹ XP_005389265

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955436	12,931,666 - 12,975,744 (-)	NCBI

Sequence:

show sequence

GGGCATGCGCACTGGGCGTCGTCGCGCCGCCGCCCGTCAGCTGAGAATTGCCTCACAGAGCTGA
GGGGCCGGTGGGTGCCTGTGGGCACCGAAGGAGGAGGAAACCGAGGAGGTCGGGGTGACTGCCT
AGAGTACTGCGTAGCCTACCAACATCTGATGAAATTAGCGAGTCAGCAAGTCAGCCATGTCTTA
CACTCCAGGGATTGGTGGGGACCCTGCCCAGCTGGCTCAGCGCATCTCTTCCAACATCCAGAAG
ATCACACAGTGTTCTGTAGAAATACAAAGGACACTGAATCAACTTGGAACGCCTCAAGATACAC
CTGAATTGAGGCAACAGCTGCAACAGAAGCAGCAGTATACTAACCAACTTGCCAAAGAGACAGA
TAAGTACATTAAAGAGTTTGGATCTCTGCCCACCACCCCCAGTGAACAGCGTCAAAGGAAAATA
CAGAAGGATCGCTTAGTGGCTGAATTCACAACAGCACTGACAAACTTTCAGAAGGTCCAGAGGC
AAGCTGCTGAGAGAGAGAAGGAATTTGTCGCTCGAGTAAGAGCCAGTTCCAGAGTGTCTGGCGG
TTTTCCTGAGGACAGCTCAAAAGAAAGGAATCTTGTGTCCTGGGAAAGCCAAACACAACCTCAA
GTGCAAGTGCAAGATGATGAGATTACAGAAGATGACCTCCGCCTCATTCACGAGAGAGAGTCTT
CTATCAGGCAGCTTGAAGCTGATATTATGGATATTAATGAAATATTTAAACATTTAGGAACAAT
GATTCATGAACAGGGAGATGTGATAGACAGTATAGAAGCCAATGTAGAAAGTGCAGAGGTACAT
GTTCAGCAAGCAAATCAGCAGCTGTCCCGGGCAGCGAATTATCAGCGCAAATCCAGGAAAACCC
TGTGCATCATCATTTTTGTCCTTGTCATTGGAGTTGTGATTGTCGGTCTCCTCATATGGGGACT
GAAATCCTAAAGTTGTAAGGAGCACACTGCTGTACTACATTGTCTAGATTATGTGGGAAGATGC
CTGTAATCATGTTTCTATTATTATGTTAAAACTATTGCAAAGGATGGTTCCCATACTTAGTTAT
TTTCATGGGGGAGGGGTTCCTTTGGATTAAATCTGATATTTTCTAATACTAAAAGTTTTTCTAA
GTATCATCGCTAGCATAACTGTCATGCTTTTTAATTTAATAACTGTAGGGTTTCTGCCCACATC
GCACATGGCTTTCATCTGTAATTTATTTACCTGTTTGACTTTGGGAATTAGTAAACTTAAAGAT
ATGCGTATTCTGTGCACATTTCTCGGTCGCTGTGTAACATGCACCAGATTTATGTTACTTCAAT
TAAAATCTCTAATTTTGATTTGGAACAGTGGAAAAAAATATTCTCAGTAACTGAAAAAGTTAAC
ATATCTGTCTGTATTTATTTTCTAGTTCACAGTAGCACAAATTGTTTATTTCGTTTTTATTATT
GGATCTTTTTGATACCCTTGTTTTCTCTGAATAAAATTAATGAATAATTTCAGGTATATCTTAT
GCACCTGATGTATATATATTAAGCATTTGTGGTAGATTGCTGAGTAAAAATAGTAAGATTAGAT
TGTTCTTACGTATGGTCTATTAAAGTCTGATATTTACTAGGAAAAGTGTAGATACTATACATGT
ATAATGTAATTTGGAGGAAGAAAATTAAAAGATCCATATTGATTTCTATTCTGTTTGGATTCTA
GAGTCCAACTTGTTATTCCACTGAACTATCTTAACAGTACCATCTGGTTTTGGGGGCCATTATT
TACTTTCCCTTATGCCTAAAGAGTAATGACTACATATGTACCTTTTGGTCAAACTTACTTTTAG
GAAGTAATTTTCCCACCGTTATTGTTTTCAAGCACCTAAGAGTTAAATTGTATTGTTTACATTT
TATGCCATTTTGTACTATGCTTCCTTAGAAAAGAAACTGGATGTTTGCCAATGAACTCACTTGC
CTTTTTAAATTGAAGTTGTTTTAATGCACTAATCTGAATACTGTTAAGAGATTGGTTAACTTAG
TTTGTAGTTTGTATTTTATACTGTTCTTATATAGTAGTTTGGTAGTGAAGATATTGTTTAACAT
AGCAATCTCTGAGACTTCAAATGGGAACAGATGAAATATGAAATAAGTAAATAAGCTGTATCCT
TGCAACCAAAATAAAAAAGATTTAAAAGGTC

hide sequence

RefSeq Acc Id:

XM_005389209 ⟹ XP_005389266

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955436	12,931,666 - 12,975,291 (-)	NCBI

Sequence:

show sequence

GGGCGCGACCTCCAGACCTCTTCCTTATTTCCACGCTTGGATGGATGGAAAAACGCACCGCACT
TGTCGCGCGGAGGGCCTATGGCCCTGGTGATCCGAGGCGCCTGGTGACTGCCTAGAGTACTGCG
TAGCCTACCAACATCTGATGAAATTAGCGAGTCAGCAAGTCAGCCATGTCTTACACTCCAGGGA
TTGGTGGGGACCCTGCCCAGCTGGCTCAGCGCATCTCTTCCAACATCCAGAAGATCACACAGTG
TTCTGTAGAAATACAAAGGACACTGAATCAACTTGGAACGCCTCAAGATACACCTGAATTGAGG
CAACAGCTGCAACAGAAGCAGCAGTATACTAACCAACTTGCCAAAGAGACAGATAAGTACATTA
AAGAGTTTGGATCTCTGCCCACCACCCCCAGTGAACAGCGTCAAAGGAAAATACAGAAGGATCG
CTTAGTGGCTGAATTCACAACAGCACTGACAAACTTTCAGAAGGTCCAGAGGCAAGCTGCTGAG
AGAGAGAAGGAATTTGTCGCTCGAGTAAGAGCCAGTTCCAGAGTGTCTGGCGGTTTTCCTGAGG
ACAGCTCAAAAGAAAGGAATCTTGTGTCCTGGGAAAGCCAAACACAACCTCAAGTGCAAGTGCA
AGATGATGAGATTACAGAAGATGACCTCCGCCTCATTCACGAGAGAGAGTCTTCTATCAGGCAG
CTTGAAGCTGATATTATGGATATTAATGAAATATTTAAACATTTAGGAACAATGATTCATGAAC
AGGGAGATGTGATAGACAGTATAGAAGCCAATGTAGAAAGTGCAGAGGTACATGTTCAGCAAGC
AAATCAGCAGCTGTCCCGGGCAGCGAATTATCAGCGCAAATCCAGGAAAACCCTGTGCATCATC
ATTTTTGTCCTTGTCATTGGAGTTGTGATTGTCGGTCTCCTCATATGGGGACTGAAATCCTAAA
GTTGTAAGGAGCACACTGCTGTACTACATTGTCTAGATTATGTGGGAAGATGCCTGTAATCATG
TTTCTATTATTATGTTAAAACTATTGCAAAGGATGGTTCCCATACTTAGTTATTTTCATGGGGG
AGGGGTTCCTTTGGATTAAATCTGATATTTTCTAATACTAAAAGTTTTTCTAAGTATCATCGCT
AGCATAACTGTCATGCTTTTTAATTTAATAACTGTAGGGTTTCTGCCCACATCGCACATGGCTT
TCATCTGTAATTTATTTACCTGTTTGACTTTGGGAATTAGTAAACTTAAAGATATGCGTATTCT
GTGCACATTTCTCGGTCGCTGTGTAACATGCACCAGATTTATGTTACTTCAATTAAAATCTCTA
ATTTTGATTTGGAACAGTGGAAAAAAATATTCTCAGTAACTGAAAAAGTTAACATATCTGTCTG
TATTTATTTTCTAGTTCACAGTAGCACAAATTGTTTATTTCGTTTTTATTATTGGATCTTTTTG
ATACCCTTGTTTTCTCTGAATAAAATTAATGAATAATTTCAGGTATATCTTATGCACCTGATGT
ATATATATTAAGCATTTGTGGTAGATTGCTGAGTAAAAATAGTAAGATTAGATTGTTCTTACGT
ATGGTCTATTAAAGTCTGATATTTACTAGGAAAAGTGTAGATACTATACATGTATAATGTAATT
TGGAGGAAGAAAATTAAAAGATCCATATTGATTTCTATTCTGTTTGGATTCTAGAGTCCAACTT
GTTATTCCACTGAACTATCTTAACAGTACCATCTGGTTTTGGGGGCCATTATTTACTTTCCCTT
ATGCCTAAAGAGTAATGACTACATATGTACCTTTTGGTCAAACTTACTTTTAGGAAGTAATTTT
CCCACCGTTATTGTTTTCAAGCACCTAAGAGTTAAATTGTATTGTTTACATTTTATGCCATTTT
GTACTATGCTTCCTTAGAAAAGAAACTGGATGTTTGCCAATGAACTCACTTGCCTTTTTAAATT
GAAGTTGTTTTAATGCACTAATCTGAATACTGTTAAGAGATTGGTTAACTTAGTTTGTAGTTTG
TATTTTATACTGTTCTTATATAGTAGTTTGGTAGTGAAGATATTGTTTAACATAGCAATCTCTG
AGACTTCAAATGGGAACAGATGAAATATGAAATAAGTAAATAAGCTGTATCCTTGCAACCAAAA
TAAAAAAGATTTAAAAGGTC

hide sequence

RefSeq Acc Id:

XM_005389210 ⟹ XP_005389267

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955436	12,928,274 - 12,975,745 (-)	NCBI

Sequence:

show sequence

GGGGCATGCGCACTGGGCGTCGTCGCGCCGCCGCCCGTCAGCTGAGAATTGCCTCACAGAGCTG
AGGGGCCGGTGGGTGCCTGTGGGCACCGAAGGAGGAGGAAACCGAGGAGGTCGGGGTGACTGCC
TAGAGTACTGCGTAGCCTACCAACATCTGATGAAATTAGCGAGTCAGCAAGTCAGCCATGTCTT
ACACTCCAGGGATTGGTGGGGACCCTGCCCAGCTGGCTCAGCGCATCTCTTCCAACATCCAGAA
GATCACACAGTGTTCTGTAGAAATACAAAGGACACTGAATCAACTTGGAACGCCTCAAGATACA
CCTGAATTGAGGCAACAGCTGCAACAGAAGCAGCAGTATACTAACCAACTTGCCAAAGAGACAG
ATAAGTACATTAAAGAGTTTGGATCTCTGCCCACCACCCCCAGTGAACAGCGTCAAAGGAAAAT
ACAGAAGGATCGCTTAGTGGCTGAATTCACAACAGCACTGACAAACTTTCAGAAGGTCCAGAGG
CAAGCTGCTGAGAGAGAGAAGGAATTTGTCGCTCGAGTAAGAGCCAGTTCCAGAGTGTCTGGCG
GTTTTCCTGAGGACAGCTCAAAAGAAAGGAATCTTGTGTCCTGGGAAAGCCAAACACAACCTCA
AGTGCAAGTGCAAGATGATGAGATTACAGAAGATGACCTCCGCCTCATTCACGAGAGAGAGTCT
TCTATCAGGCAGCTTGAAGCTGATATTATGGATATTAATGAAATATTTAAACATTTAGGAACAA
TGATTCATGAACAGGGAGATGTGATAGACAGTATAGAAGCCAATGTAGAAAGTGCAGAGGTACA
TGTTCAGCAAGCAAATCAGCAGCTGTCCCGGGCAGCGAATTATCAGCTTCCTACGTGACAAGTA
CAGGAGAGGAAGGCACTGGAGTGCAGAAGAGAAAATGTCAGCCACTGTTCCAGGAGCTTGTGAG
TCTTCGGAGCTCCAGAAGCTTTCTCTCTGCCTGCACCAGTGAGGTGTCACTCTCAAGGAGCTGT
CACCAGCTGGCTCTGCTACGACTGGCTGCAAAGTAGGTGACTTGCAAGACATTTGGAAGCTGCT
ATGAAGTCCATATCTGCCGCCTGCCTTGCAACAGCCTTAGAGGAAGGTGGACTTCTCCCTCTGC
CTTCCAGGTCTCATGGAAATGGTTCTCCTTGGCCAGCTGTAACTTAGAAACAAAGAGCAAAGCA
GATTCTGGAAAAGGTAGTTTCTGCCTTCCCTGTAGCGAGAACTGCAAAACGATGACACAGGTGA
GACTACTGTAGCACTTGATGAAGCACTGACGTGCAGAGGACAAACCTCGTGAAACAGACTCTTC
TTCAAGTAAAGATGTTAATAAAGTAAATTTAAAAAAACCTTTGAAGCAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005389265	(Get FASTA)	NCBI Sequence Viewer
	XP_005389266	(Get FASTA)	NCBI Sequence Viewer
	XP_005389267	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000016878
	ENSCLAP00000016878.1
	ENSCLAP00000016879
	ENSCLAP00000016879.1

RefSeq Acc Id:

XP_005389267 ⟸ XM_005389210

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSYTPGIGGDPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAK
ETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRV
SGGFPEDSSKERNLVSWESQTQPQVQVQDDEITEDDLRLIHERESSIRQLEADIMDINEIFKHL
GTMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQLPT

hide sequence

RefSeq Acc Id:	XP_005389265 ⟸ XM_005389208
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VKG8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYTPGIGGDPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAK ETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRV SGGFPEDSSKERNLVSWESQTQPQVQVQDDEITEDDLRLIHERESSIRQLEADIMDINEIFKHL GTMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLCIIIFVLVIGVVIVGLLI WGLKS hide sequence

RefSeq Acc Id:	XP_005389266 ⟸ XM_005389209
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VKG8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSYTPGIGGDPAQLAQRISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAK ETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRV SGGFPEDSSKERNLVSWESQTQPQVQVQDDEITEDDLRLIHERESSIRQLEADIMDINEIFKHL GTMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLCIIIFVLVIGVVIVGLLI WGLKS hide sequence

Protein Domains

t-SNARE coiled-coil homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000011580	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017043	ENTREZGENE
	ENSCLAT00000017043.1	UniProtKB/TrEMBL
	ENSCLAT00000017044	ENTREZGENE
	ENSCLAT00000017044.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
	1.20.58.70	UniProtKB/TrEMBL
InterPro	SNARE	UniProtKB/TrEMBL
	Syntaxin	UniProtKB/TrEMBL
	Syntaxin/epimorphin_CS	UniProtKB/TrEMBL
	Syntaxin_N	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
NCBI Gene	Stx7	ENTREZGENE
PANTHER	PTHR19957	UniProtKB/TrEMBL
	SYNTAXIN-7	UniProtKB/TrEMBL
Pfam	SNARE	UniProtKB/TrEMBL
	Syntaxin_2	UniProtKB/TrEMBL
PROSITE	SYNTAXIN	UniProtKB/TrEMBL
	T_SNARE	UniProtKB/TrEMBL
SMART	SynN	UniProtKB/TrEMBL
	t_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47661	UniProtKB/TrEMBL
UniProt	A0A8C2VKG8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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