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ONTOLOGY REPORT - ANNOTATIONS

Term:isoprenoid metabolic process
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Accession:GO:0006720 term browser browse the term
Definition:The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
Synonyms:exact_synonym: isoprenoid metabolism
 narrow_synonym: polyisoprenoid metabolic process;   polyisoprenoid metabolism;   polyterpene metabolic process;   polyterpene metabolism
 alt_id: GO:0016096


show annotations for term's descendants           Sort by:
isoprenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
G Phyh phytanoyl-CoA hydroxylase involved_in ISO
IEA		 MGI
GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 2:4,923,807...4,943,554
Ensembl chr 2:4,923,830...4,943,541 		JBrowse link
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr19:28,941,320...28,944,201
Ensembl chr19:28,941,353...28,944,211 		JBrowse link
9-cis-retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO
IEA		 9-cis- and all-trans-retinoic acid synthesized from 9-cis- and all-trans-retinal RGD
MGI
Ensembl		 PMID:8765131 GO_REF:0000096 GO_REF:0000107 MGI:4417868 RGD:2306683 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877 		JBrowse link
G Rdh16 retinol dehydrogenase 16 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh9 retinol dehydrogenase 9 acts_upstream_of_or_within IDA (PMID:11876656) MGI PMID:11876656 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
9-cis-retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 involved_in ISO RGD
GO_Central
MGI		 PMID:17167544 GO_REF:0000096 MGI:4417868 RGD:2306320 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
beta-carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 acts_upstream_of_or_within IMP (PMID:25701869) MGI PMID:25701869 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459 		JBrowse link
carotene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco1 beta-carotene oxygenase 1 involved_in IDA
ISO
IBA
IMP		 (MGI:1931377|PMID:11092891)
(PMID:11092891)
(PMID:15951442)
(MGI:3587559|PMID:15951442)		 UniProt
GO_Central
MGI		 PMID:11092891 PMID:15951442 GO_REF:0000033 GO_REF:0000119 MGI:1931377 MGI:3587559 MGI:4834177 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459 		JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in IDA
IBA
ISO		 (MGI:2159483|PMID:11278918), (MGI:4947204|PMID:21106934) BHF-UCL
GO_Central
MGI		 PMID:11278918 PMID:21106934 GO_REF:0000033 GO_REF:0000119 MGI:2159483 MGI:4834177 MGI:4947204 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
carotene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in IDA
ISO		 (MGI:2159483|PMID:11278918)
(PMID:11278918)		 UniProt
GO_Central
MGI		 PMID:11278918 GO_REF:0000119 MGI:2159483 MGI:4834177 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
carotenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in IMP (MGI:4947204|PMID:21106934) BHF-UCL PMID:21106934 MGI:4947204 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
diterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crh corticotropin releasing hormone involved_in ISO
IEA		 forskolin RGD
Ensembl		 PMID:21664419 GO_REF:0000107 RGD:5490546 NCBI chr 3:19,747,565...19,749,560
Ensembl chr 3:19,747,565...19,749,560 		JBrowse link
G Egfr epidermal growth factor receptor involved_in ISO
IEA		 taxanes RGD
Ensembl		 PMID:21448670 GO_REF:0000107 RGD:5131453 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158 		JBrowse link
G Hsd3b1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 ISO forskolin RGD PMID:1312436 RGD:4889580 NCBI chr 3:98,749,672...98,767,110
Ensembl chr 3:98,759,510...98,767,110 		JBrowse link
G Pgr progesterone receptor ISO forskolin, phorbol 12-myristate 13-acetate RGD PMID:8344215 RGD:1601291 NCBI chr 9:8,890,017...8,968,612
Ensembl chr 9:8,899,834...8,968,612 		JBrowse link
G Slc12a1 solute carrier family 12, member 1 ISO forskolin RGD PMID:19592485 RGD:7242914 NCBI chr 2:124,994,430...125,071,922
Ensembl chr 2:124,994,425...125,071,922 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO forskolin RGD PMID:14997014 RGD:4891943 NCBI chr13:69,721,568...69,759,611
Ensembl chr13:69,721,568...69,759,561 		JBrowse link
G Star steroidogenic acute regulatory protein involved_in ISO
IEA		 forskolin RGD
Ensembl		 PMID:11064152 GO_REF:0000107 RGD:4145763 NCBI chr 8:26,298,502...26,306,010
Ensembl chr 8:26,296,583...26,306,010 		JBrowse link
dolichol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nus1 NUS1 dehydrodolichyl diphosphate synthase subunit involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_Central
MGI		 GO_REF:0000008 GO_REF:0000033 NCBI chr10:52,293,643...52,316,288
Ensembl chr10:52,293,643...52,316,279 		JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:76,285,296...76,303,350
Ensembl chr 5:76,288,118...76,303,351 		JBrowse link
dolichol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpagt1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr 9:44,237,314...44,247,374
Ensembl chr 9:44,237,316...44,245,197 		JBrowse link
G Dpm1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic involved_in
acts_upstream_of_or_within		 ISO
IMP		 (PMID:9535917) RGD
GO_Central
MGI		 PMID:2844175 PMID:9535917 GO_REF:0000008 GO_REF:0000096 MGI:4417868 RGD:1601442 NCBI chr 2:168,050,968...168,072,299
Ensembl chr 2:168,050,968...168,072,511 		JBrowse link
G Dpm2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory involved_in
acts_upstream_of_or_within		 ISO (PMID:9724629) MGI
GO_Central		 PMID:9724629 GO_REF:0000119 MGI:4834177 NCBI chr 2:32,460,870...32,463,583
Ensembl chr 2:32,460,870...32,463,591 		JBrowse link
G Dpm3 dolichyl-phosphate mannosyltransferase polypeptide 3 involved_in ISO
IEA		 MGI
GO_Central
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 3:89,166,567...89,174,386
Ensembl chr 3:89,166,665...89,174,386 		JBrowse link
G Srd5a3 steroid 5 alpha-reductase 3 involved_in IMP
ISO		 (MGI:4821529|PMID:20637498)
(PMID:20637498)		 UniProt
GO_Central
MGI		 PMID:20637498 GO_REF:0000119 MGI:4821529 MGI:4834177 NCBI chr 5:76,285,296...76,303,350
Ensembl chr 5:76,288,118...76,303,351 		JBrowse link
farnesol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1, member B10 involved_in ISO (PMID:21187079) UniProt PMID:21187079 NCBI chr 6:34,361,182...34,373,884
Ensembl chr 6:34,361,153...34,373,885 		JBrowse link
G Akr1c14 aldo-keto reductase family 1, member C14 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,099,015...4,140,569
Ensembl chr13:4,099,011...4,140,688 		JBrowse link
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653 		JBrowse link
G Akr1c20 aldo-keto reductase family 1, member C20 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,536,855...4,573,353
Ensembl chr13:4,536,848...4,573,344 		JBrowse link
G Akr1c6 aldo-keto reductase family 1, member C6 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,484,354...4,507,529
Ensembl chr13:4,484,305...4,507,876 		JBrowse link
G Akr1cl aldo-keto reductase family 1, member C-like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:65,052,237...65,071,918
Ensembl chr 1:65,051,848...65,071,918 		JBrowse link
farnesyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdps farnesyl diphosphate synthetase involved_in ISO
IBA
IEA		 RGD
GO_Central
UniProt
MGI		 PMID:8188698 GO_REF:0000033 GO_REF:0000041 GO_REF:0000096 MGI:4417868 RGD:2316305 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
farnesyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgcs1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:120,151,887...120,169,796
Ensembl chr13:120,151,915...120,169,796 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr 3:98,187,747...98,218,054
Ensembl chr 3:98,187,751...98,218,054 		JBrowse link
farnesyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr19:28,941,320...28,944,201
Ensembl chr19:28,941,353...28,944,211 		JBrowse link
farnesyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fdft1 farnesyl diphosphate farnesyl transferase 1 involved_in ISO
IBA
IEA		 RGD
MGI
GO_Central
InterPro		 PMID:16440058 GO_REF:0000002 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:1626611 NCBI chr14:63,382,599...63,419,136
Ensembl chr14:63,382,599...63,417,027 		JBrowse link
geranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
geranyl diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr19:28,941,320...28,944,201
Ensembl chr19:28,941,353...28,944,211 		JBrowse link
geranylgeranyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
geranylgeranyl diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plpp6 phospholipid phosphatase 6 involved_in ISO
ISS		 MGI
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr19:28,941,320...28,944,201
Ensembl chr19:28,941,353...28,944,211 		JBrowse link
isopentenyl diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Idi1 isopentenyl-diphosphate delta isomerase involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:8,935,642...8,942,432
Ensembl chr13:8,935,537...8,942,487 		JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:9,002,899...9,010,981
Ensembl chr13:9,002,899...9,010,981 		JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate (diphospho) decarboxylase involved_in ISO
IEA
IBA		 RGD
GO_Central
InterPro
MGI		 PMID:197206 GO_REF:0000002 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2316852 NCBI chr 8:123,160,335...123,170,161
Ensembl chr 8:123,160,340...123,170,161 		JBrowse link
G Mvk mevalonate kinase involved_in ISO
IEA
IBA		 RGD
UniProt
GO_Central
MGI		 PMID:197206 GO_REF:0000033 GO_REF:0000041 GO_REF:0000096 MGI:4417868 RGD:2316852 NCBI chr 5:114,582,324...114,598,652
Ensembl chr 5:114,582,330...114,598,652 		JBrowse link
G Pmvk phosphomevalonate kinase involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:197206 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2316852 NCBI chr 3:89,361,848...89,376,321
Ensembl chr 3:89,361,848...89,376,320 		JBrowse link
isoprenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coq2 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase acts_upstream_of_or_within
involved_in		 IEA UniProt GO_REF:0000043 GO_REF:0000104 MGI:1354194 NCBI chr 5:100,802,589...100,822,154
Ensembl chr 5:100,802,589...100,823,006 		JBrowse link
G Crppa CDP-L-ribitol pyrophosphorylase A involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr12:36,430,334...36,739,502
Ensembl chr12:36,431,449...36,739,502 		JBrowse link
G Fdft1 farnesyl diphosphate farnesyl transferase 1 acts_upstream_of_or_within
involved_in		 IEA UniProt GO_REF:0000043 MGI:1354194 NCBI chr14:63,382,599...63,419,136
Ensembl chr14:63,382,599...63,417,027 		JBrowse link
G Fdps farnesyl diphosphate synthetase involved_in
acts_upstream_of_or_within		 IEA UniProt GO_REF:0000002 GO_REF:0000043 MGI:1354194 MGI:2152098 NCBI chr 3:89,000,895...89,009,274
Ensembl chr 3:89,000,895...89,009,266 		JBrowse link
G Ggps1 geranylgeranyl diphosphate synthase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:14,224,375...14,238,319
Ensembl chr13:14,225,244...14,238,073 		JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-Coenzyme A reductase involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr13:96,785,470...96,807,444
Ensembl chr13:96,785,475...96,807,444 		JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:120,151,887...120,169,796
Ensembl chr13:120,151,915...120,169,796 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 3:98,187,747...98,218,054
Ensembl chr 3:98,187,751...98,218,054 		JBrowse link
G Idi1 isopentenyl-diphosphate delta isomerase involved_in ISO
IEA		 MGI
UniProt
GO_Central		 GO_REF:0000043 GO_REF:0000119 MGI:4834177 NCBI chr13:8,935,642...8,942,432
Ensembl chr13:8,935,537...8,942,487 		JBrowse link
G Idi1-ps1 isopentenyl-diphosphate delta isomerase, pseudogene 1 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 2:53,584,382...53,586,882
Ensembl chr 2:53,586,133...53,586,816 		JBrowse link
G Idi2 isopentenyl-diphosphate delta isomerase 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:9,002,899...9,010,981
Ensembl chr13:9,002,899...9,010,981 		JBrowse link
G Idi2l isopentenyl-diphosphate delta isomerase 2 like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:8,991,022...8,998,279
Ensembl chr13:8,991,611...8,998,267 		JBrowse link
G Mvd mevalonate (diphospho) decarboxylase involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 8:123,160,335...123,170,161
Ensembl chr 8:123,160,340...123,170,161 		JBrowse link
G Mvk mevalonate kinase involved_in ISO MGI
GO_Central
RGD		 PMID:7904598 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:2316851 NCBI chr 5:114,582,324...114,598,652
Ensembl chr 5:114,582,330...114,598,652 		JBrowse link
G Pdss1 prenyl (solanesyl) diphosphate synthase, subunit 1 involved_in IDA
IBA
ISO		 (MGI:3607849|PMID:16262699)
(PMID:16262699)		 HGNC-UCL
GO_Central
MGI		 PMID:16262699 GO_REF:0000033 GO_REF:0000119 MGI:3607849 MGI:4834177 NCBI chr 2:22,784,393...22,830,273
Ensembl chr 2:22,785,534...22,830,278 		JBrowse link
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 involved_in IDA
ISO
IBA		 (MGI:3607849|PMID:16262699)
(PMID:16262699)		 HGNC-UCL
GO_Central
MGI		 PMID:16262699 GO_REF:0000033 GO_REF:0000119 MGI:3607849 MGI:4834177 NCBI chr10:43,095,396...43,340,878
Ensembl chr10:43,097,482...43,340,878 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 NOT|acts_upstream_of_or_within IMP (PMID:11420171) MGI PMID:11420171 NCBI chr 6:124,373,774...124,392,878
Ensembl chr 6:124,373,775...124,392,026 		JBrowse link
isoprenoid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amacr alpha-methylacyl-CoA racemase acts_upstream_of_or_within TAS (PMID:11060344) MGI PMID:11060344 NCBI chr15:10,981,875...10,995,693
Ensembl chr15:10,981,842...10,996,712 		JBrowse link
lutein catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
lycopene catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
monoterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 9:57,584,220...57,590,938
Ensembl chr 9:57,584,220...57,590,986 		JBrowse link
G Cyp2c38 cytochrome P450, family 2, subfamily c, polypeptide 38 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr19:39,379,109...39,451,519
Ensembl chr19:39,378,000...39,451,519 		JBrowse link
G Cyp2c65 cytochrome P450, family 2, subfamily c, polypeptide 65 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr19:39,049,450...39,082,392
Ensembl chr19:39,049,459...39,082,388 		JBrowse link
G Cyp2d22 cytochrome P450, family 2, subfamily d, polypeptide 22 involved_in ISO (PMID:16401082) BHF-UCL PMID:16401082 NCBI chr15:82,254,728...82,264,461
Ensembl chr15:82,254,728...82,264,461 		JBrowse link
G Cyp2e1 cytochrome P450, family 2, subfamily e, polypeptide 1 involved_in ISO
IEA		 MGI
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 7:140,343,732...140,354,903
Ensembl chr 7:140,343,652...140,354,900 		JBrowse link
negative regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1c14 aldo-keto reductase family 1, member C14 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,099,015...4,140,569
Ensembl chr13:4,099,011...4,140,688 		JBrowse link
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653 		JBrowse link
G Akr1c20 aldo-keto reductase family 1, member C20 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,536,855...4,573,353
Ensembl chr13:4,536,848...4,573,344 		JBrowse link
G Akr1c6 aldo-keto reductase family 1, member C6 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,484,354...4,507,529
Ensembl chr13:4,484,305...4,507,876 		JBrowse link
G Akr1cl aldo-keto reductase family 1, member C-like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:65,052,237...65,071,918
Ensembl chr 1:65,051,848...65,071,918 		JBrowse link
G Prmt3 protein arginine N-methyltransferase 3 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 7:49,428,067...49,508,016
Ensembl chr 7:49,428,094...49,508,013 		JBrowse link
pentacyclic triterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Htra2 HtrA serine peptidase 2 involved_in ISO
IEA		 asiatic acid RGD
Ensembl		 PMID:22296759 GO_REF:0000107 RGD:5688365 NCBI chr 6:83,028,247...83,031,552
Ensembl chr 6:83,028,247...83,032,254 		JBrowse link
phytol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase family 3, subfamily A2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr11:61,114,240...61,158,267
Ensembl chr11:61,114,243...61,158,290 		JBrowse link
G Pecr peroxisomal trans-2-enoyl-CoA reductase involved_in ISO
IEA
IBA		 MGI
Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 1:72,298,331...72,323,480
Ensembl chr 1:72,298,326...72,323,473 		JBrowse link
polyprenol biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdds dehydrodolichyl diphosphate synthase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:133,696,339...133,728,267
Ensembl chr 4:133,696,339...133,728,229 		JBrowse link
polyprenol catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srd5a3 steroid 5 alpha-reductase 3 involved_in IMP
ISO
IBA		 (MGI:4821529|PMID:20637498)
(PMID:20637498)		 UniProt
GO_Central
MGI		 PMID:20637498 GO_REF:0000033 GO_REF:0000119 MGI:4821529 MGI:4834177 NCBI chr 5:76,285,296...76,303,350
Ensembl chr 5:76,288,118...76,303,351 		JBrowse link
positive regulation of retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh1 retinol dehydrogenase 1 (all trans) involved_in ISO MGI
GO_Central
RGD		 PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771354 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO
IEA		 RGD
Ensembl
MGI		 PMID:21138835 GO_REF:0000096 GO_REF:0000107 MGI:4417868 RGD:6771354 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh16f2 RDH16 family member 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,702,345...127,713,188
Ensembl chr10:127,702,343...127,713,186 		JBrowse link
G Rdh19 retinol dehydrogenase 19 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,685,797...127,697,045
Ensembl chr10:127,685,797...127,697,045 		JBrowse link
G Rdh9 retinol dehydrogenase 9 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
regulation of vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in ISO RGD
MGI		 PMID:18000880 GO_REF:0000096 MGI:4417868 RGD:10400849 NCBI chr15:76,386,215...76,396,167
Ensembl chr15:76,386,215...76,396,153 		JBrowse link
G Isx intestine specific homeobox acts_upstream_of_or_within IMP (PMID:18093975) MGI PMID:18093975 NCBI chr 8:75,599,326...75,620,134
Ensembl chr 8:75,599,801...75,620,134 		JBrowse link
retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A member 4 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 3:121,837,547...121,973,719
Ensembl chr 3:121,838,092...121,973,772 		JBrowse link
G Akr1b10 aldo-keto reductase family 1, member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 6:34,361,182...34,373,884
Ensembl chr 6:34,361,153...34,373,885 		JBrowse link
G Akr1b8 aldo-keto reductase family 1, member B8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,331,081...34,345,396
Ensembl chr 6:34,331,054...34,345,398 		JBrowse link
G Akr1c14 aldo-keto reductase family 1, member C14 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,099,015...4,140,569
Ensembl chr13:4,099,011...4,140,688 		JBrowse link
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653 		JBrowse link
G Akr1c20 aldo-keto reductase family 1, member C20 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,536,855...4,573,353
Ensembl chr13:4,536,848...4,573,344 		JBrowse link
G Akr1c6 aldo-keto reductase family 1, member C6 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:4,484,354...4,507,529
Ensembl chr13:4,484,305...4,507,876 		JBrowse link
G Akr1cl aldo-keto reductase family 1, member C-like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:65,052,237...65,071,918
Ensembl chr 1:65,051,848...65,071,918 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IDA (PMID:12610736) MGI PMID:12610736 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in ISO
IEA		 MGI
Ensembl		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in
acts_upstream_of_or_within		 ISO
IC		 (PMID:12519776) MGI PMID:12519776 GO_REF:0000119 MGI:4834177 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484 		JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within		 IMP
ISO
IBA
IGI		 (MGI:3587559|PMID:15951442)
(PMID:15951442)
(PMID:25701869)		 UniProt
GO_Central
MGI		 PMID:15951442 PMID:25701869 GO_REF:0000033 GO_REF:0000119 MGI:3587559 MGI:4834177 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459 		JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in
acts_upstream_of_or_within		 NAS
IBA
IGI		 (MGI:2159483|PMID:11278918)
(PMID:11278918)
(PMID:25701869)		 UniProt
GO_Central
MGI		 PMID:11278918 PMID:25701869 GO_REF:0000033 MGI:2159483 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IDA
ISO		 (MGI:5572883|PMID:15258110)
(PMID:15258110)		 UniProt
GO_Central
MGI		 PMID:15258110 GO_REF:0000119 MGI:4834177 MGI:5572883 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 acts_upstream_of_or_within
involved_in		 IDA
IBA		 (PMID:12680773) MGI
GO_Central		 PMID:12680773 GO_REF:0000033 NCBI chr14:55,715,880...55,727,797
Ensembl chr14:55,716,215...55,727,797 		JBrowse link
G Rbp4 retinol binding protein 4, plasma acts_upstream_of_or_within IMP (PMID:11562477) MGI PMID:11562477 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO
IEA		 MGI
Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (PMID:12807874) MGI PMID:12807874 NCBI chr12:79,221,007...79,238,629
Ensembl chr12:79,221,111...79,239,067 		JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) involved_in ISO
ISS
IBA		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648 		JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl
MGI		 PMID:21785167 GO_REF:0000033 GO_REF:0000096 GO_REF:0000107 MGI:4417868 RGD:6893661 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO
IEA
IBA		 MGI
Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 MGI:4834177 NCBI chr 4:3,995,942...4,019,663
Ensembl chr 4:3,995,936...4,019,663 		JBrowse link
retinoic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 involved_in ISO RGD
GO_Central
MGI		 PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771354 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in ISO RGD
GO_Central
MGI		 PMID:15950969 PMID:21138835 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:6771322 RGD:6771354 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in
acts_upstream_of_or_within		 IMP
ISO
IDA		 (MGI:3042765|PMID:14623956)
(PMID:11013254), (PMID:11044606), (PMID:16241904)		 UniProt
GO_Central
MGI
RGD		 PMID:11013254 PMID:11044606 PMID:14623956 PMID:15950969 PMID:16241904 More... GO_REF:0000096 GO_REF:0000119 MGI:3042765 MGI:4417868 MGI:4834177 RGD:6771322 RGD:6771354 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Crabp2 cellular retinoic acid binding protein II ISO RGD PMID:15950969 RGD:6771322 NCBI chr 3:87,856,000...87,860,679
Ensembl chr 3:87,855,973...87,860,683 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in ISO RGD
MGI		 PMID:15950969 PMID:21138835 GO_REF:0000096 MGI:4417868 RGD:6771322 RGD:6771354 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877 		JBrowse link
G Rbp1 retinol binding protein 1, cellular involved_in IEA
ISO		 UniProt
Ensembl
RGD		 PMID:15950969 GO_REF:0000002 GO_REF:0000107 MGI:2152098 RGD:6771322 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (PMID:17473173) MGI PMID:17473173 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
retinoic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA		 (PMID:9250660)
(PMID:10588879)		 MGI
GO_Central		 PMID:9250660 PMID:10588879 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr19:37,686,186...37,689,984
Ensembl chr19:37,686,246...37,689,984 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in
acts_upstream_of_or_within		 ISO
IC		 (PMID:22366455) RGD
GO_Central
MGI		 PMID:21138835 PMID:22366455 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:6771354 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr19:37,673,560...37,681,774
Ensembl chr19:37,674,029...37,681,846 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 5:139,338,371...139,345,362
Ensembl chr 5:139,338,372...139,342,788 		JBrowse link
retinoic acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) acts_upstream_of_or_within
involved_in		 IMP
IGI
IBA		 (PMID:15193143)
(PMID:10358022), (PMID:12851412)		 MGI
GO_Central		 PMID:10358022 PMID:12851412 PMID:15193143 GO_REF:0000033 NCBI chr 3:137,983,346...137,996,459
Ensembl chr 3:137,966,752...137,996,459 		JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:138,019,047...138,036,895
Ensembl chr 3:138,019,047...138,036,895 		JBrowse link
G Adh6b alcohol dehydrogenase 6B (class V) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:138,047,176...138,064,621
Ensembl chr 3:138,047,536...138,064,622 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:10358022), (PMID:10402668) MGI
GO_Central		 PMID:10358022 PMID:10402668 GO_REF:0000033 NCBI chr 3:137,903,828...137,937,803
Ensembl chr 3:137,923,521...137,939,143 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within IDA
IMP
IGI		 (PMID:10191271)
(PMID:12808103), (PMID:12851412)
(PMID:16207763)		 MGI PMID:10191271 PMID:12808103 PMID:12851412 PMID:16207763 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in
acts_upstream_of_or_within		 ISO
IMP
IDA		 (PMID:16368932)
(PMID:14623241)
(PMID:8797830)		 RGD
GO_Central
MGI		 PMID:8797830 PMID:12547725 PMID:14623241 PMID:16368932 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:1576367 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in
acts_upstream_of_or_within		 ISO
IMP
IGI		 (PMID:16207763)
(PMID:17207476)		 MGI
GO_Central		 PMID:16207763 PMID:17207476 GO_REF:0000119 MGI:4834177 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265 		JBrowse link
G Aldh1a7 aldehyde dehydrogenase family 1, subfamily A7 NOT|acts_upstream_of_or_within IDA (PMID:10191271) MGI PMID:10191271 NCBI chr19:20,670,318...20,704,920
Ensembl chr19:20,670,317...20,704,926 		JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 involved_in ISO
IBA
ISS		 MGI
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484 		JBrowse link
G Bco2 beta-carotene oxygenase 2 involved_in NAS (MGI:2159483|PMID:11278918) UniProt PMID:11278918 MGI:2159483 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
G Crabp2 cellular retinoic acid binding protein II acts_upstream_of_or_within IDA (PMID:9826179) MGI PMID:9826179 NCBI chr 3:87,856,000...87,860,679
Ensembl chr 3:87,855,973...87,860,683 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 involved_in
acts_upstream_of_or_within		 IDA
ISO
IMP		 (MGI:1195386|PMID:9442090), (MGI:894533|PMID:9250660)
(PMID:15531370)		 UniProt
GO_Central
MGI		 PMID:9250660 PMID:9442090 PMID:15531370 GO_REF:0000119 MGI:1195386 MGI:4834177 MGI:894533 NCBI chr19:37,686,186...37,689,984
Ensembl chr19:37,686,246...37,689,984 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in
acts_upstream_of_or_within		 ISO
ISS
IC		 (PMID:15030763) MGI
GO_Central
UniProt		 PMID:15030763 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 6:84,548,396...84,570,890
Ensembl chr 6:84,548,396...84,570,890 		JBrowse link
G Cyp2c29 cytochrome P450, family 2, subfamily c, polypeptide 29 involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr19:39,275,541...39,319,157
Ensembl chr19:39,257,849...39,319,157 		JBrowse link
G Cyp2c52-ps cytochrome P450, family 2, subfamily c, polypeptide 52, pseudogene involved_in ISO (PMID:11093772) UniProt PMID:11093772 NCBI chr19:38,965,106...38,992,071
Ensembl chr19:38,965,091...38,991,733 		JBrowse link
G Cyp2c55 cytochrome P450, family 2, subfamily c, polypeptide 55 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,995,384...39,031,134
Ensembl chr19:38,995,463...39,031,137 		JBrowse link
G Cyp2s1 cytochrome P450, family 2, subfamily s, polypeptide 1 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 7:25,501,894...25,515,950
Ensembl chr 7:25,501,900...25,516,338 		JBrowse link
G Cyp3a11 cytochrome P450, family 3, subfamily a, polypeptide 11 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:145,791,417...145,816,664
Ensembl chr 5:145,791,236...145,816,774 		JBrowse link
G Cyp3a13 cytochrome P450, family 3, subfamily a, polypeptide 13 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:137,891,195...137,923,872
Ensembl chr 5:137,891,194...137,919,881 		JBrowse link
G Cyp3a16 cytochrome P450, family 3, subfamily a, polypeptide 16 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 5:145,373,119...145,406,550
Ensembl chr 5:145,373,119...145,406,533 		JBrowse link
G Cyp3a41a cytochrome P450, family 3, subfamily a, polypeptide 41A involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 5:145,630,859...145,656,946
Ensembl chr 5:145,630,859...145,656,946 		JBrowse link
G Cyp3a41b cytochrome P450, family 3, subfamily a, polypeptide 41B involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 5:145,495,474...145,521,542
Ensembl chr 5:145,495,474...145,521,540 		JBrowse link
G Cyp3a44 cytochrome P450, family 3, subfamily a, polypeptide 44 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 5:145,710,793...145,742,701
Ensembl chr 5:145,710,793...145,742,684 		JBrowse link
G Lcn5 lipocalin 5 acts_upstream_of_or_within TAS (PMID:10936050) MGI PMID:10936050 NCBI chr 2:25,547,944...25,552,242
Ensembl chr 2:25,547,964...25,551,989 		JBrowse link
G Rbp1 retinol binding protein 1, cellular acts_upstream_of_or_within IGI
IMP		 (PMID:15193143) MGI PMID:15193143 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628 		JBrowse link
G Rdh1 retinol dehydrogenase 1 (all trans) involved_in ISO MGI
GO_Central
RGD		 PMID:7499345 GO_REF:0000096 MGI:4417868 RGD:1299624 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166 		JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh16f2 RDH16 family member 2 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,702,345...127,713,188
Ensembl chr10:127,702,343...127,713,186 		JBrowse link
G Rdh19 retinol dehydrogenase 19 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,685,797...127,697,045
Ensembl chr10:127,685,797...127,697,045 		JBrowse link
G Rdh9 retinol dehydrogenase 9 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
G Scpep1 serine carboxypeptidase 1 ISO RGD PMID:11447226 RGD:70518 NCBI chr11:88,814,846...88,846,268
Ensembl chr11:88,814,846...88,846,291 		JBrowse link
retinoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A member 4 involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:121,837,547...121,973,719
Ensembl chr 3:121,838,092...121,973,772 		JBrowse link
G Adh1 alcohol dehydrogenase 1 (class I) acts_upstream_of_or_within IMP (PMID:12027900) MGI PMID:12027900 NCBI chr 3:137,983,346...137,996,459
Ensembl chr 3:137,966,752...137,996,459 		JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:138,121,217...138,138,444
Ensembl chr 3:138,121,227...138,136,653 		JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide acts_upstream_of_or_within IMP (PMID:12027900) MGI PMID:12027900 NCBI chr 3:138,142,961...138,161,260
Ensembl chr 3:138,148,854...138,161,260 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:137,903,828...137,937,803
Ensembl chr 3:137,923,521...137,939,143 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 6:34,280,865...34,294,424
Ensembl chr 6:34,279,369...34,294,413 		JBrowse link
G Akr1b10 aldo-keto reductase family 1, member B10 involved_in ISO (PMID:12732097) UniProt PMID:12732097 NCBI chr 6:34,361,182...34,373,884
Ensembl chr 6:34,361,153...34,373,885 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in TAS (MGI:4943617|PMID:20299672)
(PMID:20299672)		 DFLAT PMID:20299672 MGI:4943617 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in IDA
ISO		 (MGI:1931377|PMID:11092891)
(PMID:11092891)		 UniProt
GO_Central
MGI		 PMID:11092891 GO_REF:0000096 GO_REF:0000119 MGI:1931377 MGI:4417868 MGI:4834177 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459 		JBrowse link
G Cyp2j6 cytochrome P450, family 2, subfamily j, polypeptide 6 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr 4:96,404,375...96,449,835
Ensembl chr 4:96,404,375...96,441,898 		JBrowse link
G Cyp2j9 cytochrome P450, family 2, subfamily j, polypeptide 9 ISO RGD PMID:9606960 RGD:1625388 NCBI chr 4:96,456,661...96,480,748
Ensembl chr 4:96,456,666...96,479,815 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:24005908) MGI
GO_Central		 PMID:24005908 GO_REF:0000033 NCBI chr 4:144,618,712...144,654,214
Ensembl chr 4:144,619,397...144,654,779 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 involved_in ISO (PMID:12604222) UniProt PMID:12604222 NCBI chr14:55,715,880...55,727,797
Ensembl chr14:55,716,215...55,727,797 		JBrowse link
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (PMID:27354281) MGI PMID:27354281 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Rarres2 retinoic acid receptor responder (tazarotene induced) 2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr 6:48,546,630...48,549,778
Ensembl chr 6:48,546,630...48,549,723 		JBrowse link
G Rbp2 retinol binding protein 2, cellular acts_upstream_of_or_within TAS (PMID:11022035) MGI PMID:11022035 NCBI chr 9:98,372,590...98,391,824
Ensembl chr 9:98,368,168...98,391,834 		JBrowse link
G Rdh1 retinol dehydrogenase 1 (all trans) acts_upstream_of_or_within IDA (PMID:11562362) MGI PMID:11562362 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166 		JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr12:79,221,007...79,238,629
Ensembl chr12:79,221,111...79,239,067 		JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in IDA (MGI:1101408|PMID:9407098)
(PMID:9407098)		 UniProt PMID:9407098 MGI:1101408 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh5 retinol dehydrogenase 5 involved_in IDA
ISO
IBA		 (MGI:1350674|PMID:10588954) UniProt
GO_Central
MGI		 PMID:10588954 GO_REF:0000033 GO_REF:0000119 MGI:1350674 MGI:4834177 NCBI chr10:128,749,457...128,755,906
Ensembl chr10:128,749,462...128,758,757 		JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
retinol metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh1 alcohol dehydrogenase 1 (class I) involved_in
acts_upstream_of_or_within		 IBA
IMP
IGI		 (PMID:10358022), (PMID:12851412)
(PMID:15193143)		 GO_Central
MGI		 PMID:10358022 PMID:12851412 PMID:15193143 GO_REF:0000033 NCBI chr 3:137,983,346...137,996,459
Ensembl chr 3:137,966,752...137,996,459 		JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide involved_in ISO
ISS		 MGI
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 3:138,121,217...138,138,444
Ensembl chr 3:138,121,227...138,136,653 		JBrowse link
G Adh6a alcohol dehydrogenase 6A (class V) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:138,019,047...138,036,895
Ensembl chr 3:138,019,047...138,036,895 		JBrowse link
G Adh6b alcohol dehydrogenase 6B (class V) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:138,047,176...138,064,621
Ensembl chr 3:138,047,536...138,064,622 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:10358022), (PMID:10402668) RGD
GO_Central
MGI		 PMID:10358022 PMID:10402668 PMID:10829036 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:631904 NCBI chr 3:137,903,828...137,937,803
Ensembl chr 3:137,923,521...137,939,143 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B involved_in IEA GOC GO_REF:0000108 NCBI chr 6:34,280,865...34,294,424
Ensembl chr 6:34,279,369...34,294,413 		JBrowse link
G Akr1b10 aldo-keto reductase family 1, member B10 ISO RGD PMID:20709016 RGD:6903952 NCBI chr 6:34,361,182...34,373,884
Ensembl chr 6:34,361,153...34,373,885 		JBrowse link
G Akr1b8 aldo-keto reductase family 1, member B8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,331,081...34,345,396
Ensembl chr 6:34,331,054...34,345,398 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 acts_upstream_of_or_within
involved_in		 IMP
IEA		 (PMID:12851412) MGI
UniProt		 PMID:12851412 GO_REF:0000041 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 involved_in IEA UniProt GO_REF:0000041 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr  X:99,445,827...99,537,885
Ensembl chr  X:99,445,827...99,486,323 		JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459 		JBrowse link
G Ces1d carboxylesterase 1D involved_in IEA GOC GO_REF:0000108 NCBI chr 8:93,892,700...93,924,432
Ensembl chr 8:93,892,696...93,924,466 		JBrowse link
G Ces1e carboxylesterase 1E involved_in IEA GOC GO_REF:0000108 NCBI chr 8:93,927,846...93,956,233
Ensembl chr 8:93,927,846...93,956,247 		JBrowse link
G Ces1f carboxylesterase 1F involved_in IEA GOC GO_REF:0000108 NCBI chr 8:93,982,864...94,006,394
Ensembl chr 8:93,982,864...94,006,375 		JBrowse link
G Ces2a carboxylesterase 2A involved_in IEA GOC GO_REF:0000108 NCBI chr 8:105,460,635...105,468,266
Ensembl chr 8:105,460,635...105,468,266 		JBrowse link
G Ces2c carboxylesterase 2C involved_in IEA GOC GO_REF:0000108 NCBI chr 8:105,573,700...105,581,115
Ensembl chr 8:105,573,700...105,581,115 		JBrowse link
G Ces2e carboxylesterase 2E involved_in IEA GOC GO_REF:0000108 NCBI chr 8:105,652,892...105,661,304
Ensembl chr 8:105,652,892...105,661,304 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 involved_in ISO
IEA
ISS		 MGI
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000041 GO_REF:0000119 MGI:4834177 NCBI chr 9:57,595,211...57,611,107
Ensembl chr 9:57,595,211...57,611,107 		JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 involved_in ISO
ISS		 MGI
UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 9:57,584,220...57,590,938
Ensembl chr 9:57,584,220...57,590,986 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IDA
ISO
IEA		 (MGI:5572883|PMID:15258110)
(PMID:15258110)		 UniProt
GO_Central
MGI		 PMID:15258110 GO_REF:0000041 GO_REF:0000119 MGI:4834177 MGI:5572883 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490 		JBrowse link
G Cyp2d22 cytochrome P450, family 2, subfamily d, polypeptide 22 involved_in ISO (PMID:10681376) UniProt PMID:10681376 NCBI chr15:82,254,728...82,264,461
Ensembl chr15:82,254,728...82,264,461 		JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr15:76,386,215...76,396,167
Ensembl chr15:76,386,215...76,396,153 		JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:98,802,870...98,831,920
Ensembl chr 7:98,802,865...98,831,926 		JBrowse link
G Dhrs4 dehydrogenase/reductase 4 involved_in IEA GOC GO_REF:0000108 NCBI chr14:55,715,880...55,727,797
Ensembl chr14:55,716,215...55,727,797 		JBrowse link
G Dhrs7 dehydrogenase/reductase 7 acts_upstream_of_or_within ISO GOC GO_REF:0000119 MGI:4834177 NCBI chr12:72,697,127...72,711,678
Ensembl chr12:72,697,127...72,711,683 		JBrowse link
G Dhrs7l dehydrogenase/reductase (SDR family) member 7 like 1 acts_upstream_of_or_within ISO GOC GO_REF:0000119 MGI:4834177 NCBI chr12:72,666,893...72,675,795
Ensembl chr12:72,622,776...72,696,435 		JBrowse link
G Dhrs9 dehydrogenase/reductase 9 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,210,806...69,233,430
Ensembl chr 2:69,210,789...69,234,877 		JBrowse link
G Hsd17b6 hydroxysteroid (17-beta) dehydrogenase 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:127,826,800...127,843,517
Ensembl chr10:127,826,805...127,843,480 		JBrowse link
G Lrat lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) involved_in
acts_upstream_of_or_within		 IMP
IBA
IEA
ISO
ISS
IGI		 (MGI:6414681|PMID:28758396)
(PMID:28758396)
(PMID:18093970)		 UniProt
GO_Central
MGI
RGD		 PMID:2253789 PMID:8460936 PMID:9244401 PMID:14642897 PMID:18093970 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 MGI:6414681 RGD:1599829 RGD:1599831 RGD:1599832 RGD:6484737 NCBI chr 3:82,799,889...82,811,281
Ensembl chr 3:82,799,886...82,811,280 		JBrowse link
G Plb1 phospholipase B1 involved_in ISO
IEA		 RGD
Ensembl
GO_Central
MGI		 PMID:8117729 GO_REF:0000096 GO_REF:0000107 MGI:4417868 RGD:6903951 NCBI chr 5:32,390,035...32,521,700
Ensembl chr 5:32,390,052...32,523,864 		JBrowse link
G Pnlip pancreatic lipase involved_in IEA GOC GO_REF:0000108 NCBI chr19:58,658,797...58,670,231
Ensembl chr19:58,640,930...58,670,220 		JBrowse link
G Pnpla2 patatin-like phospholipase domain containing 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:141,035,101...141,040,656
Ensembl chr 7:141,035,111...141,040,656 		JBrowse link
G Rbp1 retinol binding protein 1, cellular involved_in
acts_upstream_of_or_within		 ISO
IMP
IGI		 (PMID:15193143), (PMID:15765518) RGD
GO_Central
MGI		 PMID:14642897 PMID:15193143 PMID:15765518 GO_REF:0000096 MGI:4417868 RGD:6484737 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628 		JBrowse link
G Rbp4 retinol binding protein 4, plasma involved_in
acts_upstream_of_or_within		 ISO
IGI		 (PMID:18093970) MGI
GO_Central		 PMID:18093970 GO_REF:0000119 MGI:4834177 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729 		JBrowse link
G Rdh1 retinol dehydrogenase 1 (all trans) involved_in ISO
IBA		 MGI
GO_Central
RGD		 PMID:7499345 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:1299624 NCBI chr10:127,595,595...127,604,168
Ensembl chr10:127,595,590...127,604,166 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO
IEA		 MGI
UniProt		 GO_REF:0000041 GO_REF:0000119 MGI:4834177 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Rdh11 retinol dehydrogenase 11 involved_in IMP
IEA
ISS		 (MGI:6189614|PMID:29567832)
(PMID:29567832)		 UniProt PMID:29567832 GO_REF:0000024 GO_REF:0000041 MGI:6189614 NCBI chr12:79,221,007...79,238,629
Ensembl chr12:79,221,111...79,239,067 		JBrowse link
G Rdh12 retinol dehydrogenase 12 involved_in IDA
IEA
ISS
ISO		 (MGI:5442470|PMID:22621924) UniProt
MGI		 PMID:22621924 GO_REF:0000024 GO_REF:0000041 GO_REF:0000119 MGI:4834177 MGI:5442470 NCBI chr12:79,255,687...79,269,438
Ensembl chr12:79,255,688...79,269,439 		JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648 		JBrowse link
G Rdh14 retinol dehydrogenase 14 (all-trans and 9-cis) involved_in
acts_upstream_of_or_within		 IDA (MGI:6271140|PMID:12226107)
(PMID:12226107)
(PMID:25533474)		 UniProt
MGI		 PMID:12226107 PMID:25533474 MGI:6271140 NCBI chr12:10,440,752...10,445,562
Ensembl chr12:10,440,772...10,445,562 		JBrowse link
G Rdh16 retinol dehydrogenase 16 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr10:127,636,959...127,651,715
Ensembl chr10:127,637,021...127,682,434 		JBrowse link
G Rdh16f2 RDH16 family member 2 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr10:127,702,345...127,713,188
Ensembl chr10:127,702,343...127,713,186 		JBrowse link
G Rdh19 retinol dehydrogenase 19 involved_in ISO MGI
GO_Central		 GO_REF:0000096 MGI:4417868 NCBI chr10:127,685,797...127,697,045
Ensembl chr10:127,685,797...127,697,045 		JBrowse link
G Rdh7 retinol dehydrogenase 7 involved_in IBA
IEA		 GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000041 NCBI chr10:127,719,896...127,725,116
Ensembl chr10:127,719,897...127,724,686 		JBrowse link
G Rdh8 retinol dehydrogenase 8 involved_in
acts_upstream_of_or_within		 IBA
IDA		 (PMID:15755727) GO_Central
MGI		 PMID:15755727 GO_REF:0000033 NCBI chr 9:20,729,790...20,739,354
Ensembl chr 9:20,729,799...20,737,413 		JBrowse link
G Rdh9 retinol dehydrogenase 9 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr10:127,612,274...127,628,566
Ensembl chr10:127,612,255...127,628,566 		JBrowse link
G Retsat retinol saturase (all trans retinol 13,14 reductase) involved_in IDA
IBA		 (MGI:3522397|PMID:15358783)
(PMID:15358783)		 HGNC-UCL
GO_Central		 PMID:15358783 GO_REF:0000033 MGI:3522397 NCBI chr 6:72,575,585...72,584,471
Ensembl chr 6:72,575,458...72,585,408 		JBrowse link
G Rpe65 retinal pigment epithelium 65 involved_in ISO RGD
GO_Central
MGI		 PMID:3603006 GO_REF:0000096 MGI:4417868 RGD:9585656 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO
IEA
IBA		 MGI
UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000119 MGI:4834177 NCBI chr 4:3,995,942...4,019,663
Ensembl chr 4:3,995,936...4,019,663 		JBrowse link
G Sdr9c7 4short chain dehydrogenase/reductase family 9C, member 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:127,734,404...127,747,630
Ensembl chr10:127,734,387...127,747,630 		JBrowse link
sesquiterpenoid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh3a2 aldehyde dehydrogenase family 3, subfamily A2 involved_in ISO MGI
GO_Central		 GO_REF:0000119 MGI:4834177 NCBI chr11:61,114,240...61,158,267
Ensembl chr11:61,114,243...61,158,290 		JBrowse link
terpene metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Th tyrosine hydroxylase ISO RGD PMID:20934257 RGD:5128841 NCBI chr 7:142,446,516...142,453,732
Ensembl chr 7:142,446,489...142,484,865 		JBrowse link
triterpenoid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lss lanosterol synthase involved_in IEA UniProt
InterPro		 GO_REF:0000002 MGI:2152098 NCBI chr10:76,367,303...76,392,973
Ensembl chr10:76,367,422...76,392,972 		JBrowse link
vitamin A metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lipa lysosomal acid lipase A acts_upstream_of_or_within IMP (PMID:27354281) MGI PMID:27354281 NCBI chr19:34,469,716...34,504,874
Ensembl chr19:34,469,718...34,504,874 		JBrowse link
G Lrat lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) involved_in
acts_upstream_of_or_within		 IMP
IBA
IDA		 (MGI:6414681|PMID:28758396)
(PMID:28758396)
(PMID:11108736)		 UniProt
GO_Central
MGI		 PMID:11108736 PMID:28758396 GO_REF:0000033 MGI:6414681 NCBI chr 3:82,799,889...82,811,281
Ensembl chr 3:82,799,886...82,811,280 		JBrowse link
G Rbp1 retinol binding protein 1, cellular involved_in ISO
ISS		 MGI
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 MGI:4834177 NCBI chr 9:98,305,014...98,328,604
Ensembl chr 9:98,305,014...98,328,628 		JBrowse link
xanthophyll catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in IDA (MGI:4947204|PMID:21106934) UniProt PMID:21106934 MGI:4947204 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
xanthophyll metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within IMP (PMID:25701869) MGI PMID:25701869 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
zeaxanthin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe65 retinal pigment epithelium 65 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958 		JBrowse link
zeaxanthin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bco2 beta-carotene oxygenase 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28762
    cellular process 18488
      metabolic process 11920
        primary metabolic process 10562
          lipid metabolic process 1520
            isoprenoid metabolic process 131
              apocarotenoid metabolic process + 0
              isoprenoid biosynthetic process + 43
              isoprenoid catabolic process + 15
              negative regulation of isoprenoid metabolic process + 6
              polyprenol metabolic process + 13
              positive regulation of isoprenoid metabolic process + 6
              prenol metabolic process + 0
              regulation of isoprenoid metabolic process + 14
              terpene metabolic process + 3
              terpenoid metabolic process + 108
paths to the root