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ONTOLOGY REPORT - ANNOTATIONS


Term:retinal metabolic process
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Accession:GO:0042574 term browser browse the term
Definition:The chemical reactions and pathways involving retinal, a compound that plays an important role in the visual process in most vertebrates. In the retina, retinal combines with opsins to form visual pigments. Retinal is one of the forms of vitamin A.
Synonyms:exact_synonym: retinal metabolism;   retinaldehyde metabolic process;   retinaldehyde metabolism



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retinal metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A (ABC1), member 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:121,837,547...121,973,719
Ensembl chr 3:121,838,092...121,973,772
JBrowse link
G Akr1b10 aldo-keto reductase family 1, member B10 (aldose reductase) ISO RGD PMID:20709016 RGD:6903952 NCBI chr 6:34,361,182...34,373,884
Ensembl chr 6:34,361,153...34,373,885
JBrowse link
G Akr1c14 aldo-keto reductase family 1, member C14 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,099,015...4,140,569
Ensembl chr13:4,099,011...4,140,688
JBrowse link
G Akr1c18 aldo-keto reductase family 1, member C18 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,182,614...4,200,645
Ensembl chr13:4,182,614...4,200,653
JBrowse link
G Akr1c20 aldo-keto reductase family 1, member C20 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,536,855...4,573,353
Ensembl chr13:4,536,848...4,573,344
JBrowse link
G Akr1c6 aldo-keto reductase family 1, member C6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:4,484,310...4,507,529
Ensembl chr13:4,484,305...4,507,876
JBrowse link
G Akr1cl aldo-keto reductase family 1, member C-like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:65,052,237...65,071,918
Ensembl chr 1:65,051,848...65,071,918
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IDA (MGI:2655944|PMID:12610736) MGI PMID:12610736 MGI:2655944 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:66,040,640...66,077,225
Ensembl chr 7:66,040,638...66,077,265
JBrowse link
G Aldh8a1 aldehyde dehydrogenase 8 family, member A1 acts_upstream_of_or_within
involved_in
IC
ISO
(MGI:2652953|PMID:12519776) MGI PMID:12519776 GO_REF:0000096 MGI:2652953 MGI:4834177 NCBI chr10:21,253,199...21,272,477
Ensembl chr10:21,253,190...21,272,484
JBrowse link
G Bco1 beta-carotene oxygenase 1 involved_in
acts_upstream_of_or_within
IBA
IGI
ISO
IMP
(MGI:6201960|PMID:21873635)
(MGI:5638293|PMID:25701869)
(MGI:3587559|PMID:15951442)
GO_Central
MGI
UniProt
PMID:15951442 PMID:21873635 PMID:25701869 GO_REF:0000096 MGI:3587559 MGI:4834177 MGI:5638293 MGI:6201960 NCBI chr 8:117,822,590...117,860,459
Ensembl chr 8:117,822,593...117,860,459
JBrowse link
G Bco2 beta-carotene oxygenase 2 acts_upstream_of_or_within
involved_in
IGI
IBA
NAS
(MGI:5638293|PMID:25701869)
(MGI:6201960|PMID:21873635)
(MGI:2159483|PMID:11278918)
MGI
GO_Central
UniProt
PMID:11278918 PMID:21873635 PMID:25701869 MGI:2159483 MGI:5638293 MGI:6201960 NCBI chr 9:50,444,387...50,466,513
Ensembl chr 9:50,444,387...50,466,481
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in IDA
ISO
(MGI:5572883|PMID:15258110) UniProt
MGI
PMID:15258110 GO_REF:0000096 MGI:4834177 MGI:5572883 NCBI chr17:80,014,369...80,022,490
Ensembl chr17:80,008,966...80,022,490
JBrowse link
G Dhrs13 dehydrogenase/reductase (SDR family) member 13 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:77,923,139...77,928,690
Ensembl chr11:77,923,106...77,928,692
JBrowse link
G Dhrs4 dehydrogenase/reductase (SDR family) member 4 acts_upstream_of_or_within
involved_in
IDA
IBA
(MGI:2655870|PMID:12680773)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12680773 PMID:21873635 MGI:2655870 MGI:6201960 NCBI chr14:55,715,880...55,727,797
Ensembl chr14:55,716,215...55,727,797
JBrowse link
G Rbp4 retinol binding protein 4, plasma acts_upstream_of_or_within IMP (MGI:2150869|PMID:11562477) MGI PMID:11562477 MGI:2150869 NCBI chr19:38,105,068...38,113,769
Ensembl chr19:38,105,077...38,113,729
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Rdh11 retinol dehydrogenase 11 acts_upstream_of_or_within ISO (MGI:2673050|PMID:12807874) MGI PMID:12807874 MGI:2673050 NCBI chr12:79,221,007...79,238,629
Ensembl chr12:79,221,111...79,239,067
JBrowse link
G Rdh13 retinol dehydrogenase 13 (all-trans and 9-cis) involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:4,428,664...4,474,279
Ensembl chr 7:4,427,769...4,448,648
JBrowse link
G Rpe65 retinal pigment epithelium 65 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:2180434|PMID:11897783) MGI
RGD
PMID:11897783 PMID:21785167 GO_REF:0000096 MGI:2180434 MGI:4417868 RGD:6893661 NCBI chr 3:159,304,712...159,330,944
Ensembl chr 3:159,304,812...159,330,958
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:3,995,942...4,019,663
Ensembl chr 4:3,995,936...4,019,663
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28745
    metabolic process 11569
      cellular metabolic process 9667
        cellular aldehyde metabolic process 72
          retinal metabolic process 21
Path 2
Term Annotations click to browse term
  biological_process 28745
    metabolic process 11569
      primary metabolic process 10318
        lipid metabolic process 1491
          cellular lipid metabolic process 1075
            isoprenoid metabolic process 121
              terpenoid metabolic process 98
                diterpenoid metabolic process 87
                  retinoid metabolic process 78
                    retinal metabolic process 21
paths to the root