Akr1c6 (aldo-keto reductase family 1, member C6) - Rat Genome Database

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Gene: Akr1c6 (aldo-keto reductase family 1, member C6) Mus musculus
Analyze
Symbol: Akr1c6
Name: aldo-keto reductase family 1, member C6
RGD ID: 1315696
MGI Page MGI
Description: Enables aldo-keto reductase (NADPH) activity and estradiol 17-beta-dehydrogenase [NAD(P)+] activity. Involved in steroid biosynthetic process. Acts upstream of or within negative regulation of mRNA splicing, via spliceosome and steroid metabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including alimentary system; liver and biliary system; lung; metanephros; and sensory organ. Human ortholog(s) of this gene implicated in 46,XY sex reversal 8; B-lymphoblastic leukemia/lymphoma; T-cell acute lymphoblastic leukemia; and leukemia. Orthologous to several human genes including AKR1C4 (aldo-keto reductase family 1 member C4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 17-beta-HSD 5; 17HSD type 5; 3alph; 3alpha-HSD; Akr1; Akr1c1; aldo-keto reductase family 1, member C1 (aldehyde reductase); estradiol 17 beta-dehydrogenase 5; estradiol 17-beta-dehydrogenase (A-specific); Hsd17b; Hsd17b5; hydroxysteroid 17-beta dehydrogenase 5
RGD Orthologs
Human
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39134,484,354 - 4,507,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl134,484,305 - 4,507,876 (+)EnsemblGRCm39 Ensembl
GRCm38134,434,311 - 4,457,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl134,434,306 - 4,457,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37134,433,589 - 4,456,776 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36134,433,637 - 4,456,642 (+)NCBIMGSCv36mm8
Celera134,408,738 - 4,431,843 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map132.48NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(20S)-20-hydroxypregn-4-en-3-one  (ISO)
1,10-phenanthroline  (ISO)
1,2-dichloroethane  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
17,21-dihydroxy-5beta-pregnane-3,11,20-trione  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,4,5,3',4',5'-Hexachlorobiphenyl  (ISO)
3alpha-hydroxy-5beta-pregnan-20-one  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-hydroxybenzoic acid  (ISO)
5-alpha-THDOC  (ISO)
5alpha-pregnane-3,20-dione  (ISO)
9,10-phenanthroquinone  (ISO)
9-cis-retinal  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
androstane-3,17-diol  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atazanavir sulfate  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
Benzo[a]pyrene-7,8-diol  (ISO)
benzo[a]pyrene-7,8-dione  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chlordecone  (ISO)
chlorohydrocarbon  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cloxazolam  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (EXP)
D-glucose  (EXP)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
diazepam  (ISO)
dicoumarol  (ISO)
flufenamic acid  (ISO)
flunitrazepam  (ISO)
flutamide  (ISO)
fructose  (EXP)
furan  (ISO)
gamma-linolenic acid  (ISO)
genistein  (ISO)
glafenine  (ISO)
glucose  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
glyphosate  (EXP)
hexestrol  (ISO)
hydralazine  (ISO)
indan-1-ol  (ISO)
indometacin  (ISO)
leflunomide  (ISO)
meclofenamic acid  (ISO)
Medazepam  (ISO)
medroxyprogesterone acetate  (ISO)
methidathion  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
NADP zwitterion  (ISO)
NADP(+)  (ISO)
nefazodone  (ISO)
nitrazepam  (ISO)
O-methyleugenol  (ISO)
octyl gallate  (ISO)
oxcarbazepine  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
phenethyl caffeate  (ISO)
phenobarbital  (EXP)
phenolphthalein  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Sunset Yellow FCF  (ISO)
tartrazine  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
Thymophthalein  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
trichloroethene  (ISO)
Triptolide  (EXP)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Expression and activity of steroid aldoketoreductases 1C in omental adipose tissue are positive correlates of adiposity in women. Blouin K, etal., Am J Physiol Endocrinol Metab. 2005 Feb;288(2):E398-404. Epub 2004 Oct 19.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7737980   PMID:9224647   PMID:10349636   PMID:10393440   PMID:10500239   PMID:11042159   PMID:11076861   PMID:11208732   PMID:11217851   PMID:11682476   PMID:12477932   PMID:12562828  
PMID:14581517   PMID:14681479   PMID:15117747   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16337335   PMID:16984997   PMID:17062636   PMID:17077188   PMID:17629694   PMID:21256921  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:23260145   PMID:23636947   PMID:23892084   PMID:25774556   PMID:26160177   PMID:33584538   PMID:37839992  


Genomics

Comparative Map Data
Akr1c6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39134,484,354 - 4,507,529 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl134,484,305 - 4,507,876 (+)EnsemblGRCm39 Ensembl
GRCm38134,434,311 - 4,457,530 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl134,434,306 - 4,457,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37134,433,589 - 4,456,776 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36134,433,637 - 4,456,642 (+)NCBIMGSCv36mm8
Celera134,408,738 - 4,431,843 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map132.48NCBI
AKR1C4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38105,196,837 - 5,218,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl105,195,462 - 5,218,949 (+)EnsemblGRCh38hg38GRCh38
GRCh37105,238,800 - 5,260,912 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36105,228,798 - 5,250,912 (+)NCBINCBI36Build 36hg18NCBI36
Build 34105,228,797 - 5,250,912NCBI
Celera105,179,002 - 5,201,106 (+)NCBICelera
Cytogenetic Map10p15.1NCBI
HuRef105,173,878 - 5,196,042 (+)NCBIHuRef
CHM1_1105,239,346 - 5,261,331 (+)NCBICHM1_1
T2T-CHM13v2.0105,198,604 - 5,220,700 (+)NCBIT2T-CHM13v2.0
Akr1c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81770,720,397 - 70,747,285 (-)NCBIGRCr8
mRatBN7.21765,810,474 - 65,837,385 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1765,810,475 - 65,837,326 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1769,306,245 - 69,325,133 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01773,135,098 - 73,153,981 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01767,178,080 - 67,196,962 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01769,441,253 - 69,460,334 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1769,441,223 - 69,460,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01771,155,010 - 71,174,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41777,084,306 - 77,112,994 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11777,095,138 - 77,123,818 (-)NCBI
Celera1765,342,356 - 65,364,506 (-)NCBICelera
Cytogenetic Map17q12.2NCBI
AKR1C4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2817,757,499 - 17,783,289 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11017,764,000 - 17,788,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0105,247,368 - 5,271,554 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1105,234,187 - 5,258,201 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl105,234,188 - 5,258,201 (+)Ensemblpanpan1.1panPan2

Variants

.
Variants in Akr1c6
854 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:274
Count of miRNA genes:246
Interacting mature miRNAs:253
Transcripts:ENSMUST00000021630, ENSMUST00000128695, ENSMUST00000156277
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse

Markers in Region
Akr1c6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13A2UniSTS
cM Map138.0UniSTS
UniSTS:225363  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38134,457,247 - 4,457,346UniSTSGRCm38
MGSCv37134,456,493 - 4,456,592UniSTSGRCm37
Celera134,431,560 - 4,431,659UniSTS
Cytogenetic Map13A2UniSTS
cM Map138.0UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000021630   ⟹   ENSMUSP00000021630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,484,305 - 4,507,529 (+)Ensembl
GRCm38.p6 Ensembl134,434,306 - 4,457,530 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128695
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,484,431 - 4,485,045 (+)Ensembl
GRCm38.p6 Ensembl134,434,432 - 4,435,046 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156277   ⟹   ENSMUSP00000117624
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,486,145 - 4,499,314 (+)Ensembl
GRCm38.p6 Ensembl134,436,146 - 4,449,315 (+)Ensembl
Ensembl Acc Id: ENSMUST00000220941   ⟹   ENSMUSP00000152575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,484,355 - 4,499,384 (+)Ensembl
GRCm38.p6 Ensembl134,434,356 - 4,449,385 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223118   ⟹   ENSMUSP00000152778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl134,497,094 - 4,507,876 (+)Ensembl
GRCm38.p6 Ensembl134,447,095 - 4,457,877 (+)Ensembl
RefSeq Acc Id: NM_001418783   ⟹   NP_001405712
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,484,354 - 4,507,529 (+)NCBI
RefSeq Acc Id: NM_001418784   ⟹   NP_001405713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,484,354 - 4,507,529 (+)NCBI
RefSeq Acc Id: NM_030611   ⟹   NP_085114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39134,484,354 - 4,507,529 (+)NCBI
GRCm38134,434,343 - 4,457,530 (+)NCBI
MGSCv37134,433,589 - 4,456,776 (+)RGD
Celera134,408,738 - 4,431,843 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_085114   ⟸   NM_030611
- Peptide Label: isoform 1
- UniProtKB: P70694 (UniProtKB/Swiss-Prot),   Q3UEM0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000152778   ⟸   ENSMUST00000223118
Ensembl Acc Id: ENSMUSP00000021630   ⟸   ENSMUST00000021630
Ensembl Acc Id: ENSMUSP00000152575   ⟸   ENSMUST00000220941
Ensembl Acc Id: ENSMUSP00000117624   ⟸   ENSMUST00000156277
RefSeq Acc Id: NP_001405712   ⟸   NM_001418783
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001405713   ⟸   NM_001418784
- Peptide Label: isoform 3
Protein Domains
NADP-dependent oxidoreductase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70694-F1-model_v2 AlphaFold P70694 1-323 view protein structure

Promoters
RGD ID:6823692
Promoter ID:MM_KWN:13154
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000068500,   OTTMUST00000068544
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36134,433,371 - 4,433,871 (+)MPROMDB
RGD ID:8679528
Promoter ID:EPDNEW_M17795
Type:initiation region
Name:Akr1c6_1
Description:Mus musculus aldo-keto reductase family 1, member C6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38134,434,355 - 4,434,415EPDNEW
RGD ID:6823693
Promoter ID:MM_KWN:13155
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000081829
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36134,435,221 - 4,435,721 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933427 AgrOrtholog
Ensembl Genes ENSMUSG00000021210 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021630 ENTREZGENE
  ENSMUST00000021630.15 UniProtKB/Swiss-Prot
  ENSMUST00000156277.2 UniProtKB/TrEMBL
  ENSMUST00000220941.2 UniProtKB/TrEMBL
  ENSMUST00000223118.2 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AKR1C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldo/ket_reductase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Aldo/keto_reductase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NADP_OxRdtase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:83702 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1933427 ENTREZGENE
NCBI Gene 83702 ENTREZGENE
PANTHER 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE UniProtKB/TrEMBL
  ALDO-KETO REDUCTASE FAMILY 1 MEMBER C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDO/KETO REDUCTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDO_KET_RED DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Aldo_ket_red UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Akr1c6 PhenoGen
PIRSF AKR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ALDKETRDTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ALDOKETO_REDUCTASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALDOKETO_REDUCTASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51430 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VNR7_MOUSE UniProtKB/TrEMBL
  A0A1Y7VP26_MOUSE UniProtKB/TrEMBL
  D3Z3P8_MOUSE UniProtKB/TrEMBL
  DHB5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UEM0 ENTREZGENE, UniProtKB/TrEMBL