Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) - Rat Genome Database

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Gene: Dpm2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory) Mus musculus
Analyze
Symbol: Dpm2
Name: dolichyl-phosphate mannosyltransferase subunit 2, regulatory (Ensembl:dolichol-phosphate (beta-D) mannosyltransferase 2)
RGD ID: 736542
MGI Page MGI
Description: Predicted to enable dolichyl-phosphate beta-D-mannosyltransferase activity and enzyme activator activity. Predicted to be involved in GPI anchor biosynthetic process; dolichol metabolic process; and regulation of protein stability. Predicted to be located in endoplasmic reticulum membrane and perinuclear region of cytoplasm. Predicted to be part of dolichol-phosphate-mannose synthase complex and glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and respiratory system. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iu. Orthologous to human DPM2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW557993; dolichol phosphate-mannose biosynthesis regulatory protein; dolichol-phosphate (beta-D) mannosyltransferase 2; dolichol-phosphate mannose synthase subunit 2; DPM synthase subunit 2; R75484
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,460,870 - 32,463,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,460,870 - 32,463,591 (+)EnsemblGRCm39 Ensembl
GRCm38232,570,858 - 32,573,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,570,858 - 32,573,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,426,378 - 32,429,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,392,867 - 32,395,580 (+)NCBIMGSCv36mm8
Celera232,276,654 - 32,279,355 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. DPM2 regulates biosynthesis of dolichol phosphate-mannose in mammalian cells: correct subcellular localization and stabilization of DPM1, and binding of dolichol phosphate. Maeda Y, etal., EMBO J 1998 Sep 1;17(17):4920-9.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8617505   PMID:10349636   PMID:10922068   PMID:10944123   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21873635   PMID:24194600   PMID:26272612   PMID:27626380  


Genomics

Comparative Map Data
Dpm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,460,870 - 32,463,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,460,870 - 32,463,591 (+)EnsemblGRCm39 Ensembl
GRCm38232,570,858 - 32,573,571 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,570,858 - 32,573,579 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,426,378 - 32,429,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,392,867 - 32,395,580 (+)NCBIMGSCv36mm8
Celera232,276,654 - 32,279,355 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
DPM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389127,935,099 - 127,937,854 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9127,935,099 - 127,937,854 (-)EnsemblGRCh38hg38GRCh38
GRCh379130,697,378 - 130,700,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,737,203 - 129,739,956 (-)NCBINCBI36Build 36hg18NCBI36
Build 349127,776,935 - 127,779,689NCBI
Celera9101,348,597 - 101,351,986 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,314,315 - 100,317,704 (-)NCBIHuRef
CHM1_19130,849,673 - 130,853,062 (-)NCBICHM1_1
T2T-CHM13v2.09140,142,875 - 140,145,630 (-)NCBIT2T-CHM13v2.0
Dpm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,253,548 - 36,256,592 (+)NCBIGRCr8
mRatBN7.2315,855,952 - 15,858,867 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl315,856,182 - 15,869,165 (+)NCBImRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,924,614 - 18,927,514 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,509,621 - 27,512,521 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,760,361 - 25,763,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,587,941 - 11,590,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,587,941 - 11,590,528 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,938,350 - 16,940,937 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera310,596,003 - 10,598,592 (+)NCBICelera
RH 3.4 Map383.1RGD
Cytogenetic Map3p11NCBI
Dpm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419740,815 - 743,036 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955419740,815 - 743,036 (+)NCBIChiLan1.0ChiLan1.0
DPM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,415,475 - 11,418,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,415,399 - 11,420,675 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,055,271 - 99,058,058 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,725,783 - 127,729,589 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,725,780 - 127,729,589 (-)Ensemblpanpan1.1panPan2
DPM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,484,244 - 55,488,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,485,605 - 55,487,735 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,679,431 - 54,682,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,407,404 - 56,410,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,407,680 - 56,409,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1955,167,501 - 55,170,426 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,482,125 - 55,485,141 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,573,351 - 55,576,367 (+)NCBIUU_Cfam_GSD_1.0
Dpm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,796,624 - 195,801,080 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,565,176 - 15,567,881 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,565,151 - 15,567,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,418,445 - 268,423,552 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,420,273 - 268,423,557 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,342,022 - 302,345,311 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,184,087 - 10,187,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,185,040 - 10,187,279 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,031,269 - 6,034,645 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,638,437 - 7,640,810 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,638,497 - 7,640,810 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dpm2
74 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1065
Count of miRNA genes:443
Interacting mature miRNAs:512
Transcripts:ENSMUST00000028151, ENSMUST00000128039, ENSMUST00000140592, ENSMUST00000150419
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse

Markers in Region
AI426465  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,569,576 - 32,569,700UniSTSGRCm38
MGSCv37232,425,096 - 32,425,220UniSTSGRCm37
Celera232,275,372 - 32,275,496UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2541.57UniSTS
AW557993  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,573,238 - 32,573,322UniSTSGRCm38
MGSCv37232,428,758 - 32,428,842UniSTSGRCm37
Celera232,279,022 - 32,279,106UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2544.53UniSTS
RH125248  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,573,339 - 32,573,512UniSTSGRCm38
MGSCv37232,428,859 - 32,429,032UniSTSGRCm37
Celera232,279,123 - 32,279,296UniSTS
Cytogenetic Map2BUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000028151   ⟹   ENSMUSP00000028151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,460,870 - 32,463,591 (+)Ensembl
GRCm38.p6 Ensembl232,570,858 - 32,573,579 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,460,879 - 32,463,093 (+)Ensembl
GRCm38.p6 Ensembl232,570,867 - 32,573,081 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140592   ⟹   ENSMUSP00000124665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,460,870 - 32,463,575 (+)Ensembl
GRCm38.p6 Ensembl232,570,858 - 32,573,563 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,462,059 - 32,463,468 (+)Ensembl
GRCm38.p6 Ensembl232,572,047 - 32,573,456 (+)Ensembl
RefSeq Acc Id: NM_010073   ⟹   NP_034203
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,460,870 - 32,463,583 (+)NCBI
GRCm38232,570,858 - 32,573,571 (+)ENTREZGENE
MGSCv37232,426,378 - 32,429,091 (+)RGD
Celera232,276,654 - 32,279,355 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034203   ⟸   NM_010073
- UniProtKB: Q9Z324 (UniProtKB/Swiss-Prot),   Q545R7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028151   ⟸   ENSMUST00000028151
RefSeq Acc Id: ENSMUSP00000124665   ⟸   ENSMUST00000140592

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z324-F1-model_v2 AlphaFold Q9Z324 1-84 view protein structure

Promoters
RGD ID:6831195
Promoter ID:MM_KWN:28722
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000028375,   OTTMUST00000028376,   OTTMUST00000028377
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,426,139 - 32,426,639 (+)MPROMDB
RGD ID:6831194
Promoter ID:MM_KWN:28723
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain
Transcripts:OTTMUST00000028378
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,427,691 - 32,428,191 (+)MPROMDB
RGD ID:6877014
Promoter ID:EPDNEW_M1958
Type:initiation region
Name:Dpm2_1
Description:Mus musculus dolichol-phosphate (beta-D) mannosyltransferase2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38232,570,878 - 32,570,938EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1330238 AgrOrtholog
Ensembl Genes ENSMUSG00000026810 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028151 ENTREZGENE
  ENSMUST00000028151.7 UniProtKB/Swiss-Prot
  ENSMUST00000140592.8 UniProtKB/TrEMBL
InterPro DPM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13481 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1330238 ENTREZGENE
NCBI Gene 13481 ENTREZGENE
PANTHER DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15039 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DPM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dpm2 PhenoGen
UniProt DPM2_MOUSE UniProtKB/Swiss-Prot
  E0CXW3_MOUSE UniProtKB/TrEMBL
  Q545R7 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z324 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Dpm2  dolichyl-phosphate mannosyltransferase subunit 2, regulatory  Dpm2  dolichol-phosphate (beta-D) mannosyltransferase 2  Symbol and/or name change 5135510 APPROVED