Idi1-ps1 (isopentenyl-diphosphate delta isomerase, pseudogene 1) - Rat Genome Database

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Gene: Idi1-ps1 (isopentenyl-diphosphate delta isomerase, pseudogene 1) Mus musculus
Analyze
No known orthologs.
Symbol: Idi1-ps1
Name: isopentenyl-diphosphate delta isomerase, pseudogene 1
RGD ID: 10020222
MGI Page MGI
Description: Predicted to enable isopentenyl-diphosphate delta-isomerase activity; magnesium ion binding activity; and manganese ion binding activity. Predicted to be involved in isoprenoid biosynthetic process. Predicted to be located in peroxisome. Orthologous to human IDI1 (isopentenyl-diphosphate delta isomerase 1).
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: Gm13502; Gm38481; isopentenyl-diphosphate Delta-isomerase 1; predicted gene 13502; predicted gene, 38481
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Idi1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39253,584,382 - 53,586,882 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl253,586,133 - 53,586,816 (-)EnsemblGRCm39 Ensembl
GRCm38253,694,340 - 53,696,857 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl253,696,121 - 53,696,804 (-)NCBIGRCm38mm10GRCm38
MGSCv37253,553,399 - 53,555,904 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36253,516,361 - 53,518,783 (-)NCBIMGSCv36mm8
MGSCv36254,228,325 - 54,230,749 (-)NCBIMGSCv36mm8
Celera255,303,150 - 55,305,655 (-)NCBICelera
Cytogenetic Map2C1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
peroxisome  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in Idi1-ps1
84 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000121574
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl253,586,133 - 53,586,816 (-)Ensembl
GRCm38.p6 Ensembl253,696,121 - 53,696,804 (-)Ensembl
RefSeq Acc Id: NR_169308
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39253,584,382 - 53,586,882 (-)NCBI
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P58044-F1-model_v2 AlphaFold P58044 1-227 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3649894 AgrOrtholog
  MGI:5621366 AgrOrtholog
Ensembl Genes ENSMUSG00000083287 Ensembl
MGD MGI:3649894 ENTREZGENE
NCBI Gene Gm38481 ENTREZGENE
PhenoGen Idi1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-07 Idi1-ps1  isopentenyl-diphosphate delta isomerase, pseudogene 1  Gm38481  predicted gene, 38481  Symbol and/or name change 5135510 APPROVED
2020-07-02 Gm38481  predicted gene, 38481  Gm13502  predicted gene 13502  Data merged from RGD:2294682 737654 PROVISIONAL
2020-06-30 Gm13502  predicted gene 13502  Idi1-ps1  isopentenyl-diphosphate delta isomerase, pseudogene 1  Symbol and/or name change 5135510 APPROVED
2020-06-29 Idi1-ps1  isopentenyl-diphosphate delta isomerase, pseudogene 1  Gm13502  predicted gene 13502  Symbol and/or name updated 27372883 PROVISIONAL